Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G47160 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 1.8e-96 355.9 179 100.0
AL6G52060 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 1.3e-46 190.3 199 55.3
Carub.0006s3640 Capsella rubella HOM05D001988 ORTHO05D004985 2.5e-42 176.0 208 53.4
Aa31LG2G7390 Aethionema arabicum HOM05D001988 ORTHO05D004985 9.1e-40 167.5 227 48.0
Thhalv10027666m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 1.7e-38 163.3 225 46.2
CARHR145370 Cardamine hirsuta HOM05D001988 ORTHO05D004985 1.4e-37 160.2 215 49.3
AT2G02955 Arabidopsis thaliana HOM05D001988 ORTHO05D004985 7.2e-37 157.9 208 47.6
AL5G12570 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 1.6e-36 156.8 232 44.8
Carub.0005s0183 Capsella rubella HOM05D001988 ORTHO05D004985 1.4e-35 153.7 228 47.8
Sp7g05500 Schrenkiella parvula HOM05D001988 ORTHO05D004985 1.1e-34 150.6 228 43.9
BolC8t52776H Brassica oleracea HOM05D001988 ORTHO05D004985 2.0e-34 149.8 213 45.1
A09p68050 Brassica napus HOM05D001988 ORTHO05D004985 2.6e-34 149.4 214 45.8
BraA09t42140Z Brassica rapa HOM05D001988 ORTHO05D004985 4.4e-34 148.7 213 45.5
BcaC07g42212 Brassica carinata HOM05D001988 ORTHO05D004985 1.8e-32 143.3 214 44.9
C08p52490 Brassica napus HOM05D001988 ORTHO05D004985 1.8e-32 143.3 214 44.9
Thhalv10004418m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 7.0e-32 141.4 222 43.7
THA.LOC104805159 Tarenaya hassleriana HOM05D001988 ORTHO05D004985 2.1e-28 129.8 223 37.7
Cpa.g.sc128.24 Carica papaya HOM05D001988 ORTHO05D004985 5.5e-21 105.1 242 33.5
GSVIVG01019982001 Vitis vinifera HOM05D001988 ORTHO05D004985 1.3e-17 94.0 201 35.3
Lj8A318G47 Lonicera japonica HOM05D001988 ORTHO05D004985 8.3e-17 91.3 213 33.8
PGR102G2417 Punica granatum HOM05D001988 ORTHO05D004985 3.1e-16 89.4 207 34.3
TPR.G16225 Trifolium pratense HOM05D001988 ORTHO05D004985 5.4e-16 88.6 209 33.0
Psat7g139200 Pisum sativum HOM05D001988 ORTHO05D004985 2.7e-15 86.3 217 31.3
Medtr4g057650 Medicago truncatula HOM05D001988 ORTHO05D004985 5.9e-15 85.1 208 32.7
CANSAT54G1389 Cannabis sativa HOM05D001988 ORTHO05D004985 1.3e-14 84.0 236 30.5
CsaV3_2G009530 Cucumis sativus L. HOM05D001988 ORTHO05D004985 1.7e-14 83.6 241 30.7
SGA_v2.0_scaffold58G20462 Striga asiatica HOM05D001988 ORTHO05D004985 1.7e-14 83.6 210 32.4
AT4G01340 Arabidopsis thaliana HOM05D001988 ORTHO05D019756 2.2e-14 83.2 46 80.4
vmacro01260 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 3.8e-14 82.4 234 32.9
Cfa008981 Carpinus fangiana HOM05D001988 ORTHO05D004985 8.5e-14 81.3 240 29.6
ClCG11G010950 Citrullus lanatus HOM05D001988 ORTHO05D004985 1.1e-13 80.9 235 29.8
VMungo1127G0715 Vigna mungo HOM05D001988 ORTHO05D004985 2.5e-13 79.7 231 29.9
Migut.I00421 Erythranthe guttata HOM05D001988 ORTHO05D004985 3.2e-13 79.3 190 32.1
Medtr4g071660 Medicago truncatula HOM05D001988 ORTHO05D004985 3.2e-13 79.3 194 33.0
Phvul.011G039300 Phaseolus vulgaris HOM05D001988 ORTHO05D004985 4.2e-13 79.0 231 29.9
CiPaw.05G135300 Carya illinoinensis HOM05D001988 ORTHO05D004985 5.5e-13 78.6 244 28.3
FAN21G2649 Fragaria x ananassa HOM05D001988 ORTHO05D004985 5.5e-13 78.6 239 31.0
arahy.Tifrunner.gnm1.ann1.N3HM5N Arachis hypogaea HOM05D001988 ORTHO05D004985 7.2e-13 78.2 197 31.0
Nitab4.5_0007649g0010 Nicotiana tabacum HOM05D001988 ORTHO05D004985 7.2e-13 78.2 232 31.5
arahy.Tifrunner.gnm1.ann1.41IR6N Arachis hypogaea HOM05D001988 ORTHO05D004985 9.4e-13 77.8 229 28.8
MELO3C008752.2 Cucumis melo HOM05D001988 ORTHO05D004985 9.4e-13 77.8 246 30.1
Ca_20931_v3 Cicer arietinum L. HOM05D001988 ORTHO05D004985 1.2e-12 77.4 225 30.7
arahy.Tifrunner.gnm1.ann1.8UN484 Arachis hypogaea HOM05D001988 ORTHO05D004985 1.6e-12 77.0 229 29.3
Nn4g23157 Nelumbo nucifera HOM05D001988 ORTHO05D004985 1.6e-12 77.0 242 30.2
FAN25G3456 Fragaria x ananassa HOM05D001988 ORTHO05D004985 2.1e-12 76.6 239 31.4
FAN25G3604 Fragaria x ananassa HOM05D001988 ORTHO05D006298 2.1e-12 76.6 239 31.4
arahy.Tifrunner.gnm1.ann1.AY0VQT Arachis hypogaea HOM05D001988 ORTHO05D004985 2.7e-12 76.3 229 28.8
Migut.F02100 Erythranthe guttata HOM05D001988 ORTHO05D004985 2.7e-12 76.3 214 29.9
FvH4_3g26291 Fragaria vesca HOM05D001988 ORTHO05D004985 2.7e-12 76.3 239 30.5
Manes.01G185700 Manihot esculenta HOM05D001988 ORTHO05D004985 2.7e-12 76.3 55 69.1
Oeu037938.2 Olea europaea HOM05D001988 ORTHO05D004985 3.6e-12 75.9 232 29.7
Prupe.1G174900 Prunus persica HOM05D001988 ORTHO05D004985 3.6e-12 75.9 61 63.9
Sed0003814 Sechium edule HOM05D001988 ORTHO05D004985 3.6e-12 75.9 238 30.3
Sopen09g001990 Solanum pennellii HOM05D001988 ORTHO05D004985 3.6e-12 75.9 232 30.2
Lsat_1_v5_gn_4_55321 Lactuca sativa HOM05D001988 ORTHO05D004985 4.7e-12 75.5 220 30.5
RcHm_v2.0_Chr7g0220021 Rosa chinensis HOM05D001988 ORTHO05D004985 4.7e-12 75.5 239 29.7
TPR.G27077 Trifolium pratense HOM05D001988 ORTHO05D004985 6.1e-12 75.1 207 30.9
CAN.G439.30 Capsicum annuum HOM05D001988 ORTHO05D004985 8.0e-12 74.7 233 30.0
Nitab4.5_0000428g0180 Nicotiana tabacum HOM05D001988 ORTHO05D004985 1.0e-11 74.3 232 31.0
Peaxi162Scf00217g00713 Petunia axillaris HOM05D001988 ORTHO05D004985 1.0e-11 74.3 232 31.0
RcHm_v2.0_Chr5g0048641 Rosa chinensis HOM05D001988 ORTHO05D004985 1.4e-11 73.9 239 30.5
Ciclev10030768m.g Citrus clementina HOM05D001988 ORTHO05D004985 1.8e-11 73.6 244 28.7
FAN11G2867 Fragaria x ananassa HOM05D001988 ORTHO05D006298 1.8e-11 73.6 239 30.1
PGSC0003DMG401018705 Solanum tuberosum HOM05D001988 ORTHO05D004985 2.3e-11 73.2 233 30.5
Dinv16646 Davidia involucrata HOM05D001988 ORTHO05D004985 3.0e-11 72.8 113 40.7
HanXRQChr09g0255131 Helianthus annuus HOM05D001988 ORTHO05D004985 4.0e-11 72.4 61 62.3
Hund05880 Selenicereus undatus HOM05D001988 ORTHO05D004985 4.0e-11 72.4 88 48.9
Solyc11g071540.2 Solanum lycopersicum HOM05D001988 ORTHO05D004985 4.0e-11 72.4 233 30.5
AUR62005788 Chenopodium quinoa HOM05D001988 ORTHO05D004985 6.8e-11 71.6 228 28.9
QL03p064038 Quercus lobata HOM05D001988 ORTHO05D004985 6.8e-11 71.6 244 27.5
Sopen11g029230 Solanum pennellii HOM05D001988 ORTHO05D004985 6.8e-11 71.6 233 30.0
QL03p063402 Quercus lobata HOM05D001988 ORTHO05D004985 8.8e-11 71.2 244 27.9
Sabra10G0129300 Salix brachista HOM05D001988 ORTHO05D004985 8.8e-11 71.2 232 28.9
Glyma.11G111300 Glycine max HOM05D001988 ORTHO05D004985 1.2e-10 70.9 132 37.1
EL10Ac6g13205 Beta vulgaris HOM05D001988 ORTHO05D004985 1.5e-10 70.5 220 30.5
Hma1.2p1_0265F.1_g106750 Hydrangea macrophylla HOM05D001988 ORTHO05D004985 1.5e-10 70.5 61 57.4
Lsat_1_v5_gn_5_156781 Lactuca sativa HOM05D001988 ORTHO05D004985 1.5e-10 70.5 240 28.8
Lsat_1_v5_gn_8_100701 Lactuca sativa HOM05D001988 ORTHO05D004985 1.5e-10 70.5 233 29.6
Solyc09g007120.4 Solanum lycopersicum HOM05D001988 ORTHO05D004985 1.5e-10 70.5 232 29.3
AUR62028773 Chenopodium quinoa HOM05D001988 ORTHO05D004985 2.0e-10 70.1 202 31.2
Eucgr.B03444 Eucalyptus grandis HOM05D001988 ORTHO05D004985 2.0e-10 70.1 93 46.2
Eucgr.B03445 Eucalyptus grandis HOM05D001988 ORTHO05D004985 2.0e-10 70.1 61 60.7
Oeu007681.1 Olea europaea HOM05D001988 ORTHO05D004985 2.0e-10 70.1 67 55.2
DCAR_007151 Daucus carota HOM05D001988 ORTHO05D004985 2.6e-10 69.7 221 28.5
Lalb_Chr14g0368981 Lupinus albus HOM05D001988 ORTHO05D004985 2.6e-10 69.7 94 46.8
Haze_12013 Corylus avellana HOM05D001988 ORTHO05D004985 3.4e-10 69.3 66 53.0
TWI53G0339 Tripterygium wilfordii HOM05D001988 ORTHO05D004985 3.4e-10 69.3 54 64.8
TAR629G1399 Trochodendron aralioides HOM05D001988 ORTHO05D004985 3.4e-10 69.3 60 56.7
ECA248G0899 Erigeron canadensis HOM05D001988 ORTHO05D004985 4.4e-10 68.9 61 59.0
SalBow1G3615 Salvia bowleyana HOM05D001988 ORTHO05D004985 4.4e-10 68.9 73 52.1
SHI13475 Sapria himalayana HOM05D001988 ORTHO05D004985 4.4e-10 68.9 67 56.7
Rhsim12G0063800 Rhododendron simsii HOM05D001988 ORTHO05D004985 5.7e-10 68.6 61 57.4
MSTRG.27418 Avicennia marina HOM05D001988 ORTHO05D004985 7.5e-10 68.2 110 38.2
HanXRQChr05g0145521 Helianthus annuus HOM05D001988 ORTHO05D004985 7.5e-10 68.2 62 61.3
Lj3g0010541 Lotus japonicus HOM05D001988 ORTHO05D004985 9.8e-10 67.8 101 42.6
EL10Ac9g22126 Beta vulgaris HOM05D001988 ORTHO05D004985 1.3e-09 67.4 54 64.8
Cc09_g03970 Coffea canephora HOM05D001988 ORTHO05D004985 1.7e-09 67.0 61 59.0
Actinidia19875 Actinidia chinensis HOM05D001988 ORTHO05D004985 2.2e-09 66.6 61 54.1
MD04G1025400 Malus domestica HOM05D001988 ORTHO05D004985 2.2e-09 66.6 61 54.1
PSO017G3571 Papaver somniferum HOM05D001988 ORTHO05D004985 2.2e-09 66.6 67 47.8
PSO063G4641 Papaver somniferum HOM05D001988 ORTHO05D004985 2.8e-09 66.2 67 47.8
CSS0030030 Camellia sinensis var. sinensis HOM05D001988 ORTHO05D004985 8.3e-09 64.7 61 55.7
Duzib251G0871 Durio zibethinus HOM05D001988 ORTHO05D004985 8.3e-09 64.7 61 55.7
Aqoxy1G01101 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 1.8e-08 63.5 66 47.0
Sc11g0001930 Simmondsia chinensis HOM05D001988 ORTHO05D004985 1.8e-08 63.5 56 58.9
Gohir.A05G183600 Gossypium hirsutum HOM05D001988 ORTHO05D004985 2.4e-08 63.2 61 55.7
Gohir.D05G304800 Gossypium hirsutum HOM05D001988 ORTHO05D004985 2.4e-08 63.2 61 55.7
Gorai.009G324500 Gossypium raimondii HOM05D001988 ORTHO05D004985 2.4e-08 63.2 61 55.7
vmacro01166 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 2.4e-08 63.2 61 52.5
HPP92_021577 Vanilla planifolia HOM05D001988 ORTHO05D004985 2.4e-08 63.2 233 29.2
Thecc.02G346500 Theobroma cacao HOM05D001988 ORTHO05D004985 3.1e-08 62.8 53 62.3
CDE07G0941 Ceratophyllum demersum HOM05D001988 ORTHO05D004985 5.4e-08 62.0 225 28.0
Potri.010G169500 Populus trichocarpa HOM05D001988 ORTHO05D004985 9.1e-08 61.2 47 68.1
ECA234G0637 Erigeron canadensis HOM05D001988 ORTHO05D004985 1.2e-07 60.8 61 54.1
Ah.05g179340 Amaranthus hybridus HOM05D001988 ORTHO05D004985 2.0e-07 60.1 219 27.9
AUR62008859 Chenopodium quinoa HOM05D001988 ORTHO05D004985 2.7e-07 59.7 90 42.2
AT4G01335 Arabidopsis thaliana HOM05D001988 ORTHO05D019756 4.5e-07 58.9 38 71.1
PGSC0003DMG400002020 Solanum tuberosum HOM05D001988 ORTHO05D004985 4.5e-07 58.9 61 52.5
MBI19_g09828_MAGBIO Magnolia biondii HOM05D001988 ORTHO05D004985 1.0e-06 57.8 246 25.2
Sp2g13990 Schrenkiella parvula HOM05D001988 ORTHO05D004985 1.0e-06 57.8 36 69.4
unitig_60.g25620 Utricularia gibba HOM05D001988 ORTHO05D004985 1.3e-06 57.4 123 33.3
Aqoxy5G02833 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 6.6e-06 55.1 52 50.0
AagrBONN_evm.TU.Sc2ySwM_362.1334 Anthoceros agrestis HOM05D001988 ORTHO05D004985 8.6e-06 54.7 64 43.8
AagrBONN_evm.TU.Sc2ySwM_362.1335 Anthoceros agrestis HOM05D000001 ORTHO05D000003 8.6e-06 54.7 64 43.8


User provided reference genes

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