Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G20910 Arabidopsis lyrata HOM05D002037 ORTHO05D005261 0.0e+00 3489.5 1910 100.0
Carub.0007s0937 Capsella rubella HOM05D002037 ORTHO05D005261 0.0e+00 3191.0 1927 91.4
AT4G31160 Arabidopsis thaliana HOM05D002037 ORTHO05D005261 0.0e+00 3187.5 1913 92.3
CARHR239070 Cardamine hirsuta HOM05D002037 ORTHO05D005261 0.0e+00 3040.0 1840 89.4
Thhalv10024189m.g Eutrema salsugineum HOM05D002037 ORTHO05D005261 0.0e+00 2930.2 1870 84.1
BcaB03g12684 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 2877.0 1924 83.1
BraA03t15097Z Brassica rapa HOM05D002037 ORTHO05D005261 0.0e+00 2867.4 1793 84.4
A03p60560 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 2866.3 1842 82.8
C07p58470 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 2848.9 1904 82.0
BcaC01g01107 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 2846.6 1790 85.8
BolC7t46302H Brassica oleracea HOM05D002037 ORTHO05D005261 0.0e+00 2845.8 1901 82.1
C03p88150 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 2837.8 1802 85.0
BolC3t21123H Brassica oleracea HOM05D002037 ORTHO05D005261 0.0e+00 2834.7 1929 82.5
A08p18770 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 2821.6 1928 82.1
BraA08t33838Z Brassica rapa HOM05D002037 ORTHO05D005261 0.0e+00 2821.6 1928 82.1
Aa31LG2G19150 Aethionema arabicum HOM05D002037 ORTHO05D005261 0.0e+00 2475.7 1845 75.3
THA.LOC104803581 Tarenaya hassleriana HOM05D002037 ORTHO05D005261 0.0e+00 2441.4 1827 72.0
Sp7g29040 Schrenkiella parvula HOM05D002037 ORTHO05D005261 0.0e+00 2372.4 1442 89.3
THA.LOC104803889 Tarenaya hassleriana HOM05D002037 ORTHO05D005261 0.0e+00 2331.6 1833 69.4
BcaNung01540 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 2077.8 1418 81.9
Thecc.09G001100 Theobroma cacao HOM05D002037 ORTHO05D005261 0.0e+00 2046.6 1877 60.4
Ciclev10007230m.g Citrus clementina HOM05D002037 ORTHO05D005261 0.0e+00 2024.2 1846 60.9
Gohir.A08G253200 Gossypium hirsutum HOM05D002037 ORTHO05D005261 0.0e+00 2014.2 1872 60.3
Gohir.D08G274900 Gossypium hirsutum HOM05D002037 ORTHO05D005261 0.0e+00 2014.2 1851 60.5
Gorai.004G293400 Gossypium raimondii HOM05D002037 ORTHO05D005261 0.0e+00 2011.9 1872 60.1
Prupe.1G463700 Prunus persica HOM05D002037 ORTHO05D005261 0.0e+00 2002.6 1835 60.0
CiPaw.08G017100 Carya illinoinensis HOM05D002037 ORTHO05D005261 0.0e+00 1970.3 1914 57.8
Potri.006G280200 Populus trichocarpa HOM05D002037 ORTHO05D005261 0.0e+00 1965.7 1841 59.6
COL.COLO4_18641 Corchorus olitorius HOM05D002037 ORTHO05D005261 0.0e+00 1959.5 1846 58.9
Haze_21662 Corylus avellana HOM05D002037 ORTHO05D005261 0.0e+00 1954.9 1897 57.6
MD08G1132100 Malus domestica HOM05D002037 ORTHO05D005261 0.0e+00 1953.7 1842 58.8
Manes.16G138600 Manihot esculenta HOM05D002037 ORTHO05D005261 0.0e+00 1953.7 1868 59.7
Glyma.06G075000 Glycine max HOM05D002037 ORTHO05D005261 0.0e+00 1951.4 1858 59.4
CiPaw.07G216200 Carya illinoinensis HOM05D002037 ORTHO05D005261 0.0e+00 1947.6 1875 57.9
RcHm_v2.0_Chr6g0312521 Rosa chinensis HOM05D002037 ORTHO05D005261 0.0e+00 1945.6 1975 58.9
FvH4_2g30560 Fragaria vesca HOM05D002037 ORTHO05D005261 0.0e+00 1938.3 1943 59.3
QL12p030895 Quercus lobata HOM05D002037 ORTHO05D005261 0.0e+00 1937.5 1884 58.4
FAN27G2203 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 1937.2 1944 58.7
Cpa.g.sc148.12 Carica papaya HOM05D002037 ORTHO05D005261 0.0e+00 1936.0 1858 60.2
FAN24G1054 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 1933.7 1942 59.0
arahy.Tifrunner.gnm1.ann1.WQ4U6A Arachis hypogaea HOM05D002037 ORTHO05D005261 0.0e+00 1931.8 1864 58.9
arahy.Tifrunner.gnm1.ann1.8Q3S3N Arachis hypogaea HOM05D002037 ORTHO05D005261 0.0e+00 1931.4 1865 58.7
MD15G1113300 Malus domestica HOM05D002037 ORTHO05D005261 0.0e+00 1925.6 1869 59.6
TWI32G0793 Tripterygium wilfordii HOM05D002037 ORTHO05D005261 0.0e+00 1924.1 1887 57.8
Phvul.009G099700 Phaseolus vulgaris HOM05D002037 ORTHO05D005261 0.0e+00 1922.1 1874 58.4
Duzib187G1591 Durio zibethinus HOM05D002037 ORTHO05D005261 0.0e+00 1918.3 1886 57.8
TWI63G1280 Tripterygium wilfordii HOM05D002037 ORTHO05D005261 0.0e+00 1915.6 1922 57.0
Glyma.04G073900 Glycine max HOM05D002037 ORTHO05D005261 0.0e+00 1914.8 1889 58.4
Sabra06G0217200 Salix brachista HOM05D002037 ORTHO05D005261 0.0e+00 1906.0 1826 59.4
VMungo1309G2917 Vigna mungo HOM05D002037 ORTHO05D005261 0.0e+00 1905.6 1874 58.2
CANSAT25G0165 Cannabis sativa HOM05D002037 ORTHO05D005261 0.0e+00 1897.1 1850 58.0
Medtr3g108470 Medicago truncatula HOM05D002037 ORTHO05D005261 0.0e+00 1893.6 1883 58.6
Lj7A751T36 Lonicera japonica HOM05D002037 ORTHO05D005261 0.0e+00 1892.1 1881 56.8
CSS0033264 Camellia sinensis var. sinensis HOM05D002037 ORTHO05D005261 0.0e+00 1890.2 1901 56.1
Cfa013233 Carpinus fangiana HOM05D002037 ORTHO05D005261 0.0e+00 1890.2 1843 57.6
PGR044G2064 Punica granatum HOM05D002037 ORTHO05D005261 0.0e+00 1889.0 1827 59.1
CsaV3_3G046860 Cucumis sativus L. HOM05D002037 ORTHO05D005261 0.0e+00 1886.7 1873 56.3
Lalb_Chr11g0064041 Lupinus albus HOM05D002037 ORTHO05D005261 0.0e+00 1884.0 1866 57.5
Atru.chr7.2709 Acer truncatum HOM05D002037 ORTHO05D005261 0.0e+00 1883.6 1813 58.7
TAR628G0359 Trochodendron aralioides HOM05D002037 ORTHO05D005261 0.0e+00 1881.7 1909 56.4
TPR.G12447 Trifolium pratense HOM05D002037 ORTHO05D005261 0.0e+00 1880.5 1856 58.6
Lalb_Chr08g0243691 Lupinus albus HOM05D002037 ORTHO05D005261 0.0e+00 1862.4 1899 56.9
Sed0009824 Sechium edule HOM05D002037 ORTHO05D005261 0.0e+00 1858.2 1855 56.3
MELO3C003650.2 Cucumis melo HOM05D002037 ORTHO05D005261 0.0e+00 1852.4 1906 55.5
Psat5g026040 Pisum sativum HOM05D002037 ORTHO05D005261 0.0e+00 1850.1 1890 56.0
Eucgr.C03980 Eucalyptus grandis HOM05D002037 ORTHO05D005261 0.0e+00 1849.7 1840 57.7
PGR044G2421 Punica granatum HOM05D002037 ORTHO05D005261 0.0e+00 1847.4 1821 57.1
Sopen08g023030 Solanum pennellii HOM05D002037 ORTHO05D005261 0.0e+00 1843.6 1880 56.3
ClCG05G017350 Citrullus lanatus HOM05D002037 ORTHO05D005261 0.0e+00 1837.8 1972 53.9
Solyc08g074370.4 Solanum lycopersicum HOM05D002037 ORTHO05D005261 0.0e+00 1832.0 1872 56.1
Lj1g0006019 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 1823.1 1866 55.8
Sed0015816 Sechium edule HOM05D002037 ORTHO05D005261 0.0e+00 1821.6 1905 54.8
Duzib168G1462 Durio zibethinus HOM05D002037 ORTHO05D005261 0.0e+00 1820.4 1822 59.2
CAN.G195.8 Capsicum annuum HOM05D002037 ORTHO05D005261 0.0e+00 1817.7 1882 56.0
FAN20G1121 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 1815.0 1935 56.6
Lj5g0025434 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 1815.0 1877 55.4
HanXRQChr03g0082961 Helianthus annuus HOM05D002037 ORTHO05D005261 0.0e+00 1813.9 1806 56.6
vmacro05091 Vaccinium macrocarpon HOM05D002037 ORTHO05D005261 0.0e+00 1805.4 1800 56.3
Hund19377 Selenicereus undatus HOM05D002037 ORTHO05D005261 0.0e+00 1803.1 1881 54.9
GSVIVG01035587001 Vitis vinifera HOM05D002037 ORTHO05D005261 0.0e+00 1798.5 1793 57.2
Sc09g0007440 Simmondsia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 1792.7 1867 55.0
Ca_15684_v3 Cicer arietinum L. HOM05D002037 ORTHO05D005261 0.0e+00 1782.3 1853 56.4
ECA240G1370 Erigeron canadensis HOM05D002037 ORTHO05D005261 0.0e+00 1775.0 1814 56.4
Actinidia03327 Actinidia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 1772.3 1848 54.3
Aqoxy6G00128 Aquilegia oxysepala HOM05D002037 ORTHO05D005261 0.0e+00 1770.4 1903 53.5
Cc00_g09840 Coffea canephora HOM05D002037 ORTHO05D005261 0.0e+00 1770.0 1892 54.2
SGA_v2.0_scaffold193G40648 Striga asiatica HOM05D002037 ORTHO05D005261 0.0e+00 1769.2 1884 55.8
DCAR_002179 Daucus carota HOM05D002037 ORTHO05D005261 0.0e+00 1767.3 1892 53.0
MSTRG.25765 Avicennia marina HOM05D002037 ORTHO05D005261 0.0e+00 1766.1 1888 54.3
EL10Ac2g03672 Beta vulgaris HOM05D002037 ORTHO05D005261 0.0e+00 1755.3 1878 53.6
Migut.A00462 Erythranthe guttata HOM05D002037 ORTHO05D005261 0.0e+00 1748.0 1829 54.4
AUR62028065 Chenopodium quinoa HOM05D002037 ORTHO05D005261 0.0e+00 1739.9 1869 54.4
SGA_v2.0_scaffold27G11691 Striga asiatica HOM05D002037 ORTHO05D005261 0.0e+00 1729.5 1915 52.2
Lsat_1_v5_gn_5_59360 Lactuca sativa HOM05D002037 ORTHO05D005261 0.0e+00 1722.2 1803 54.5
SalBow4G1905 Salvia bowleyana HOM05D002037 ORTHO05D005261 0.0e+00 1717.2 1867 53.5
AUR62020667 Chenopodium quinoa HOM05D002037 ORTHO05D005261 0.0e+00 1704.5 1868 53.6
PSO063G0181 Papaver somniferum HOM05D002037 ORTHO05D005261 0.0e+00 1696.0 1857 52.5
Peaxi162Scf00213g01313 Petunia axillaris HOM05D002037 ORTHO05D005261 0.0e+00 1695.6 1839 53.5
PSO017G1653 Papaver somniferum HOM05D002037 ORTHO05D005261 0.0e+00 1686.0 1871 52.1
DCAR_030972 Daucus carota HOM05D002037 ORTHO05D005261 0.0e+00 1646.7 1908 50.6
ATR0584G173 Amborella trichopoda HOM05D002037 ORTHO05D005261 0.0e+00 1630.2 1828 51.3
MBI09_g40924_MAGBIO Magnolia biondii HOM05D002037 ORTHO05D005261 0.0e+00 1596.6 1929 50.4
CDE08G1677 Ceratophyllum demersum HOM05D002037 ORTHO05D005261 0.0e+00 1592.0 1905 50.2
CDE02G1944 Ceratophyllum demersum HOM05D002037 ORTHO05D005261 0.0e+00 1589.3 1912 49.1
Nn1g08375 Nelumbo nucifera HOM05D002037 ORTHO05D005261 0.0e+00 1580.8 1715 52.8
Rhsim07G0173400 Rhododendron simsii HOM05D002037 ORTHO05D005261 0.0e+00 1562.7 1718 52.9
HPP92_025041 Vanilla planifolia HOM05D002037 ORTHO05D005261 0.0e+00 1470.3 1918 46.8
Zm00001eb434410 Zea mays HOM05D002037 ORTHO05D005261 0.0e+00 1445.6 1869 46.4
Zm00001eb076460 Zea mays HOM05D002037 ORTHO05D005261 0.0e+00 1414.8 1886 45.6
Eucgr.C00279 Eucalyptus grandis HOM05D002037 ORTHO05D005261 0.0e+00 1381.7 1278 59.6
Mapoly0062s0116 Marchantia polymorpha HOM05D002037 ORTHO05D005261 0.0e+00 1324.7 1945 44.3
Pp3c1_12700 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1307.4 1907 43.1
Pp3c1_12703 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1307.4 1907 43.1
Pp3c2_24840 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1303.1 1864 44.2
unitig_26.g8827 Utricularia gibba HOM05D002037 ORTHO05D005261 0.0e+00 1256.9 1869 44.1
Dinv37481 Davidia involucrata HOM05D002037 ORTHO05D005261 0.0e+00 1213.0 1254 57.1
MBI09_g01931_MAGBIO Magnolia biondii HOM05D002037 ORTHO05D005261 0.0e+00 1167.9 1555 48.7
Hma1.2p1_0214F.1_g090640 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 0.0e+00 1154.0 1220 57.5
Actinidia25728 Actinidia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 1147.1 1845 40.8
AagrBONN_evm.TU.Sc2ySwM_117.676 Anthoceros agrestis HOM05D002037 ORTHO05D005261 0.0e+00 1113.2 1792 41.3
Nitab4.5_0009273g0010 Nicotiana tabacum HOM05D002037 ORTHO05D005261 1.5e-305 1053.9 1050 56.8
Lj1g0010809 Lotus japonicus HOM05D002037 ORTHO05D005261 1.8e-282 977.2 1364 46.7
CBR_g37392 Chara braunii HOM05D002037 ORTHO05D000002 4.1e-271 939.5 1554 40.7
Hma1.2p1_0319F.1_g123860 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 4.6e-267 926.0 978 54.4
Dinv09451 Davidia involucrata HOM05D002037 ORTHO05D005261 3.9e-258 896.3 921 54.9
Dinv09452 Davidia involucrata HOM05D002037 ORTHO05D005261 9.7e-249 865.1 898 55.8
Oeu057143.1 Olea europaea HOM05D002037 ORTHO05D005261 1.7e-240 837.8 1449 42.0
Migut.E01409 Erythranthe guttata HOM05D002037 ORTHO05D005261 1.3e-237 828.2 1784 34.8
Nitab4.5_0003528g0010 Nicotiana tabacum HOM05D002037 ORTHO05D005261 2.6e-233 813.9 798 56.0
PSO170G5891 Papaver somniferum HOM05D002037 ORTHO05D005261 3.0e-226 790.4 871 52.9
SEGI_24212 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 8.3e-216 755.7 785 54.1
BcaNung01541 Brassica carinata HOM05D002037 ORTHO05D005261 1.7e-168 598.6 449 71.9
Hma1.2p1_0214F.1_g090650 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 2.1e-166 591.7 494 60.7
Os04g0691200 Oryza sativa ssp. japonica HOM05D002037 ORTHO05D005261 2.2e-160 571.6 699 45.8
SEGI_28363 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 4.2e-159 567.4 708 47.2
Glyma.14G131100 Glycine max HOM05D002037 ORTHO05D005261 1.2e-158 565.8 770 45.1
Dinv37482 Davidia involucrata HOM05D002037 ORTHO05D005261 3.7e-147 527.7 495 55.6
SHI50541 Sapria himalayana HOM05D002037 ORTHO05D005261 6.3e-139 500.4 661 46.9
Hma1.2p1_2010F.1_g311000 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 1.1e-132 479.6 338 66.9
Hma1.2p1_1382F.1_g279390 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 2.2e-120 438.7 434 54.8
Hma1.2p1_2176F.1_g316130 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 1.1e-119 436.4 435 54.7
Aqoxy4G02471 Aquilegia oxysepala HOM05D002037 ORTHO05D005261 1.7e-112 412.5 1237 28.2
SHI21131 Sapria himalayana HOM05D002037 ORTHO05D005261 3.0e-104 385.2 349 58.2
FAN20G0200 Fragaria x ananassa HOM05D002037 ORTHO05D005261 7.8e-89 334.0 420 48.8
Migut.E01404 Erythranthe guttata HOM05D002037 ORTHO05D005261 3.1e-85 322.0 612 36.1
Cre17.g725450 Chlamydomonas reinhardtii HOM05D002037 ORTHO05D005261 2.0e-76 292.7 2063 22.3
Migut.E01403 Erythranthe guttata HOM05D002037 ORTHO05D005261 2.1e-73 282.7 444 39.2
Lj1g0019909 Lotus japonicus HOM05D002037 ORTHO05D005261 2.0e-60 239.6 161 71.4
TPR.G39361 Trifolium pratense HOM05D002037 ORTHO05D005261 2.0e-52 213.0 261 47.1
Hund03252 Selenicereus undatus HOM05D002037 ORTHO05D005261 4.5e-52 211.8 870 27.2
Hma1.2p1_1382F.1_g279380 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 7.6e-52 211.1 222 56.3
SEGI_07751 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 4.2e-50 205.3 463 33.9
Hma1.2p1_2176F.1_g316120 Hydrangea macrophylla HOM05D002037 ORTHO05D005586 3.3e-47 195.7 141 74.5
TPR.G7111 Trifolium pratense HOM05D002037 ORTHO05D005261 6.7e-40 171.4 189 57.7
Gohir.D08G274833 Gossypium hirsutum HOM05D002037 ORTHO05D005261 4.6e-33 148.7 77 92.2
Potri.006G280600 Populus trichocarpa HOM05D003201 ORTHO05D008914 5.9e-20 105.1 230 36.5
MD08G1134600 Malus domestica HOM05D002037 ORTHO05D005261 1.8e-13 83.6 62 59.7
Nitab4.5_0000919g0010 Nicotiana tabacum HOM05D002037 ORTHO05D021575 1.7e-11 77.0 80 52.5
Dinv03356 Davidia involucrata HOM05D002037 ORTHO05D005261 5.2e-08 65.5 76 51.3
Hund03253 Selenicereus undatus HOM05D002037 ORTHO05D005261 5.2e-08 65.5 49 53.1
Dinv42062 Davidia involucrata HOM05D000142 ORTHO05D000124 2.6e-07 63.2 60 55.0
TPR.G29968 Trifolium pratense HOM05D001758 ORTHO05D005969 5.7e-07 62.0 33 78.8
arahy.Tifrunner.gnm1.ann1.ME62WN Arachis hypogaea HOM05D002037 ORTHO05D005261 9.8e-07 61.2 81 40.7


User provided reference genes

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