Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G20240 Arabidopsis lyrata HOM05D004741 ORTHO05D005454 2.4e-245 851.7 419 100.0
AT4G31770 Arabidopsis thaliana HOM05D004741 ORTHO05D005454 7.9e-236 820.1 419 94.3
Carub.0007s0879 Capsella rubella HOM05D004741 ORTHO05D005454 7.9e-228 793.5 421 91.0
CARHR239670 Cardamine hirsuta HOM05D004741 ORTHO05D005454 4.1e-224 781.2 420 89.0
Thhalv10025305m.g Eutrema salsugineum HOM05D004741 ORTHO05D005454 8.7e-219 763.5 420 88.3
Aa31LG2G18560 Aethionema arabicum HOM05D004741 ORTHO05D005454 1.1e-216 756.5 412 88.1
Sp7g29560 Schrenkiella parvula HOM05D004741 ORTHO05D005454 1.5e-215 752.7 422 88.2
BcaB03g12718 Brassica carinata HOM05D004741 ORTHO05D005454 6.5e-214 747.3 421 86.0
A08p18460 Brassica napus HOM05D004741 ORTHO05D005454 1.9e-213 745.7 419 86.2
BraA08t33808Z Brassica rapa HOM05D004741 ORTHO05D005454 2.1e-212 742.3 419 85.2
BcaNung04120 Brassica carinata HOM05D004741 ORTHO05D005454 2.6e-210 735.3 413 85.5
BcaNung01502 Brassica carinata HOM05D004741 ORTHO05D005454 7.4e-210 733.8 413 85.2
BraA03t15138Z Brassica rapa HOM05D004741 ORTHO05D005454 4.8e-209 731.1 416 85.1
BolC3t21075H Brassica oleracea HOM05D004741 ORTHO05D005454 3.1e-208 728.4 424 83.3
BolC7t46334H Brassica oleracea HOM05D004741 ORTHO05D005454 9.1e-208 726.9 416 84.4
C07p58870 Brassica napus HOM05D004741 ORTHO05D005454 5.9e-207 724.2 420 84.0
A03p60970 Brassica napus HOM05D004741 ORTHO05D005454 1.2e-204 716.5 384 89.1
C03p87550 Brassica napus HOM05D004741 ORTHO05D005454 1.2e-204 716.5 424 82.3
THA.LOC104803607 Tarenaya hassleriana HOM05D004741 ORTHO05D005454 3.1e-200 701.8 420 79.8
BcaNung01500 Brassica carinata HOM05D004741 ORTHO05D005454 7.5e-186 654.1 413 78.5
QL02p018098 Quercus lobata HOM05D004741 ORTHO05D005454 3.0e-171 605.5 401 71.3
TWI32G1217 Tripterygium wilfordii HOM05D004741 ORTHO05D005454 9.8e-170 600.5 401 71.1
RcHm_v2.0_Chr6g0299131 Rosa chinensis HOM05D004741 ORTHO05D005454 2.2e-169 599.4 418 68.2
MD15G1043800 Malus domestica HOM05D004741 ORTHO05D005454 4.9e-169 598.2 401 70.6
FAN15G2922 Fragaria x ananassa HOM05D004741 ORTHO05D005454 1.8e-168 596.3 413 68.3
Eucgr.C04030 Eucalyptus grandis HOM05D004741 ORTHO05D005454 3.2e-168 595.5 418 68.2
FvH4_2g41360 Fragaria vesca HOM05D004741 ORTHO05D005454 4.1e-168 595.1 413 68.3
CiPaw.07G232700 Carya illinoinensis HOM05D004741 ORTHO05D005454 1.6e-167 593.2 416 68.5
Ca_15788_v3 Cicer arietinum L. HOM05D004741 ORTHO05D005454 1.6e-167 593.2 401 69.3
Atru.chr7.2571 Acer truncatum HOM05D004741 ORTHO05D005454 5.9e-167 591.3 403 70.5
Lj1g0020479 Lotus japonicus HOM05D004741 ORTHO05D005454 2.3e-166 589.3 402 69.9
CsaV3_2G032600 Cucumis sativus L. HOM05D004741 ORTHO05D005454 2.5e-165 585.9 403 69.0
Lalb_Chr08g0244491 Lupinus albus HOM05D004741 ORTHO05D005454 4.3e-165 585.1 401 69.8
ClCG08G013810 Citrullus lanatus HOM05D004741 ORTHO05D005454 2.8e-164 582.4 401 67.8
Manes.03G006700 Manihot esculenta HOM05D004741 ORTHO05D005454 2.8e-164 582.4 401 70.8
arahy.Tifrunner.gnm1.ann1.68HE9A Arachis hypogaea HOM05D004741 ORTHO05D005454 3.6e-164 582.0 401 68.3
Glyma.04G059700 Glycine max HOM05D004741 ORTHO05D005454 3.6e-164 582.0 401 69.3
Thecc.09G013800 Theobroma cacao HOM05D004741 ORTHO05D005454 4.7e-164 581.6 400 70.2
ECA246G1320 Erigeron canadensis HOM05D004741 ORTHO05D005454 6.2e-164 581.3 393 69.2
PSO210G2241 Papaver somniferum HOM05D004741 ORTHO05D005454 1.0e-163 580.5 413 68.0
arahy.Tifrunner.gnm1.ann1.HM8GSV Arachis hypogaea HOM05D004741 ORTHO05D005454 1.4e-163 580.1 401 68.3
GSVIVG01009251001 Vitis vinifera HOM05D004741 ORTHO05D005454 2.3e-163 579.3 382 71.2
Sed0002897 Sechium edule HOM05D004741 ORTHO05D005454 4.0e-163 578.6 407 67.1
AUR62035754 Chenopodium quinoa HOM05D004741 ORTHO05D005454 5.2e-163 578.2 403 68.5
Sc02g0008350 Simmondsia chinensis HOM05D004741 ORTHO05D005454 5.2e-163 578.2 414 65.7
MELO3C011313.2 Cucumis melo HOM05D004741 ORTHO05D005454 1.2e-162 577.0 403 68.0
Psat5g034520 Pisum sativum HOM05D004741 ORTHO05D005454 2.6e-162 575.9 401 69.3
PSO761G0470 Papaver somniferum HOM05D004741 ORTHO05D005454 4.4e-162 575.1 413 67.6
CSS0005545 Camellia sinensis var. sinensis HOM05D004741 ORTHO05D005454 5.8e-162 574.7 415 65.5
TPR.G1862 Trifolium pratense HOM05D004741 ORTHO05D005454 7.5e-162 574.3 382 70.7
EL10Ac1g02297 Beta vulgaris HOM05D004741 ORTHO05D005454 9.8e-162 573.9 414 66.9
Potri.018G015300 Populus trichocarpa HOM05D004741 ORTHO05D005454 9.8e-162 573.9 406 69.2
VMungo1309G1293 Vigna mungo HOM05D004741 ORTHO05D005454 9.8e-162 573.9 401 68.1
Medtr3g105810 Medicago truncatula HOM05D004741 ORTHO05D005454 1.3e-161 573.5 405 68.4
Nn8g39668 Nelumbo nucifera HOM05D004741 ORTHO05D005454 3.7e-161 572.0 420 64.8
TAR625G0772 Trochodendron aralioides HOM05D004741 ORTHO05D005454 3.7e-161 572.0 404 66.8
Aqoxy5G01951 Aquilegia oxysepala HOM05D004741 ORTHO05D005454 6.4e-161 571.2 400 69.0
CAN.G673.1 Capsicum annuum HOM05D004741 ORTHO05D005454 8.3e-161 570.9 414 66.4
Dinv22023 Davidia involucrata HOM05D004741 ORTHO05D005454 8.3e-161 570.9 382 69.1
Duzib168G2074 Durio zibethinus HOM05D004741 ORTHO05D005454 1.1e-160 570.5 382 70.2
Gohir.D11G176300 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.4e-160 570.1 402 67.4
Oeu016078.1 Olea europaea HOM05D004741 ORTHO05D005454 4.1e-160 568.5 401 67.6
DCAR_020033 Daucus carota HOM05D004741 ORTHO05D005454 1.6e-159 566.6 401 66.8
COL.COLO4_18967 Corchorus olitorius HOM05D004741 ORTHO05D005454 2.0e-159 566.2 401 68.1
Lsat_1_v5_gn_6_106561 Lactuca sativa HOM05D004741 ORTHO05D005454 1.3e-158 563.5 381 69.8
HanXRQChr10g0277671 Helianthus annuus HOM05D004741 ORTHO05D005454 8.6e-158 560.8 364 71.4
Sabra18G0018800 Salix brachista HOM05D004741 ORTHO05D005454 1.5e-157 560.1 382 69.9
Lsat_1_v5_gn_4_135621 Lactuca sativa HOM05D004741 ORTHO05D005454 1.9e-157 559.7 401 67.6
MSTRG.20476 Avicennia marina HOM05D004741 ORTHO05D005454 2.5e-157 559.3 401 64.8
BcaC01g01061 Brassica carinata HOM05D004741 ORTHO05D005454 5.6e-157 558.1 361 77.3
Migut.K00575 Erythranthe guttata HOM05D004741 ORTHO05D005454 8.1e-156 554.3 402 65.9
Cfa013018 Carpinus fangiana HOM05D004741 ORTHO05D005454 1.1e-155 553.9 416 65.6
RcHm_v2.0_Chr2g0135121 Rosa chinensis HOM05D004741 ORTHO05D005454 2.3e-155 552.7 404 66.1
vmacro21376 Vaccinium macrocarpon HOM05D004741 ORTHO05D005454 1.5e-154 550.1 432 63.4
Peaxi162Scf00005g04810 Petunia axillaris HOM05D004741 ORTHO05D005454 2.6e-154 549.3 401 65.6
Solyc07g017640.2 Solanum lycopersicum HOM05D004741 ORTHO05D005454 2.6e-154 549.3 402 65.7
Cpa.g.sc40.1 Carica papaya HOM05D004741 ORTHO05D005454 7.5e-154 547.7 299 82.3
Lj4A81G69 Lonicera japonica HOM05D004741 ORTHO05D005454 1.3e-153 547.0 463 59.0
Sopen07g006470 Solanum pennellii HOM05D004741 ORTHO05D005454 1.1e-152 543.9 401 64.8
unitig_744.g24377 Utricularia gibba HOM05D004741 ORTHO05D005454 1.3e-150 537.0 396 61.9
CDE06G0415 Ceratophyllum demersum HOM05D004741 ORTHO05D005454 1.7e-150 536.6 375 67.5
Cc00_g23510 Coffea canephora HOM05D004741 ORTHO05D005454 5.1e-150 535.0 416 61.1
PGSC0003DMG400002300 Solanum tuberosum HOM05D004741 ORTHO05D005454 5.1e-150 535.0 344 70.9
Phvul.009G085900 Phaseolus vulgaris HOM05D004741 ORTHO05D005454 8.6e-150 534.3 342 72.2
ATR0767G225 Amborella trichopoda HOM05D004741 ORTHO05D005454 1.1e-149 533.9 374 67.4
Zm00001eb215780 Zea mays HOM05D004741 ORTHO05D005454 1.6e-148 530.0 370 66.2
MBI16_g14670_MAGBIO Magnolia biondii HOM05D004741 ORTHO05D005454 4.7e-148 528.5 412 64.6
Nitab4.5_0006397g0010 Nicotiana tabacum HOM05D004741 ORTHO05D005454 1.1e-147 527.3 344 69.5
Atru.BG.288.p Acer truncatum HOM05D004741 ORTHO05D005454 1.4e-147 526.9 368 66.3
Aqoxy1G00870 Aquilegia oxysepala HOM05D004741 ORTHO05D005454 2.6e-146 522.7 373 67.3
Aqoxy4G02579 Aquilegia oxysepala HOM05D004741 ORTHO05D005454 4.7e-140 501.9 369 65.9
SEGI_18909 Sequoiadendron giganteum HOM05D004741 ORTHO05D005454 1.2e-135 487.3 337 65.9
Ah.04g152730 Amaranthus hybridus HOM05D004741 ORTHO05D005454 3.5e-135 485.7 435 56.8
SalBow7G0863 Salvia bowleyana HOM05D004741 ORTHO05D005454 3.5e-135 485.7 360 65.8
SalBow7G1987 Salvia bowleyana HOM05D004741 ORTHO05D005454 6.0e-135 485.0 360 65.8
Mapoly0014s0124 Marchantia polymorpha HOM05D004741 ORTHO05D005454 1.0e-134 484.2 401 57.6
HPP92_007721 Vanilla planifolia HOM05D004741 ORTHO05D005454 1.8e-131 473.4 361 63.2
Rhsim06G0068400 Rhododendron simsii HOM05D004741 ORTHO05D005454 3.5e-127 459.1 388 59.3
Pp3c24_19510 Physcomitrium patens HOM05D004741 ORTHO05D005454 7.9e-127 458.0 405 56.3
Gohir.1Z049533 Gossypium hirsutum HOM05D004741 ORTHO05D005454 3.0e-126 456.1 401 58.1
SMO284G0001 Selaginella moellendorffii HOM05D004741 ORTHO05D005454 9.6e-125 451.1 369 57.2
SMO145G0212 Selaginella moellendorffii HOM05D004741 ORTHO05D005454 2.1e-124 449.9 370 57.3
Gohir.A02G000200 Gossypium hirsutum HOM05D004741 ORTHO05D005454 7.1e-120 434.9 361 60.9
CBR_g10907 Chara braunii HOM05D004741 ORTHO05D005454 6.7e-118 428.3 409 52.3
FvH4_6g29560 Fragaria vesca HOM05D004741 ORTHO05D005454 1.5e-117 427.2 347 62.0
Gohir.A11G330400 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.5e-117 426.4 399 55.4
FAN14G3005 Fragaria x ananassa HOM05D004741 ORTHO05D005454 4.8e-116 422.2 347 61.7
Prupe.1G397300 Prunus persica HOM05D004741 ORTHO05D005454 2.4e-115 419.9 310 65.8
Hund05236 Selenicereus undatus HOM05D004741 ORTHO05D005454 4.2e-112 409.1 311 65.9
SGA_v2.0_scaffold443G51691 Striga asiatica HOM05D004741 ORTHO05D005454 2.7e-111 406.4 409 51.6
Gohir.A05G415901 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.0e-110 404.4 247 73.7
SGA_v2.0_scaffold48G18066 Striga asiatica HOM05D004741 ORTHO05D005454 5.1e-110 402.1 320 62.5
AUR62033828 Chenopodium quinoa HOM05D004741 ORTHO05D005454 1.1e-109 401.0 379 55.1
MD08G1051300 Malus domestica HOM05D004741 ORTHO05D005454 4.1e-107 392.5 251 74.5
Cre02.g146950 Chlamydomonas reinhardtii HOM05D004741 ORTHO05D005454 3.8e-105 386.0 442 46.2
Gohir.A07G233600 Gossypium hirsutum HOM05D004741 ORTHO05D005454 3.8e-105 386.0 409 50.9
MCO02G476 Micromonas commoda HOM05D004741 ORTHO05D005454 1.1e-99 367.9 283 56.5
Dinv44899 Davidia involucrata HOM05D004741 ORTHO05D005454 3.1e-99 366.3 274 63.5
PRCOL_00004462 Prasinoderma coloniale HOM05D004741 ORTHO05D005454 1.4e-96 357.5 415 44.8
Nitab4.5_0000159g0030 Nicotiana tabacum HOM05D004741 ORTHO05D005454 8.2e-92 341.7 199 75.9
SGA_v2.0_scaffold24G10244 Striga asiatica HOM05D004741 ORTHO05D005454 6.9e-91 338.6 200 73.5
BcaB02g11404 Brassica carinata HOM05D004741 ORTHO05D005454 8.8e-86 321.6 167 88.6
Gohir.A12G000500 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.5e-85 320.9 319 53.9
Gohir.A12G001100 Gossypium hirsutum HOM05D004741 ORTHO05D005454 4.4e-85 319.3 272 59.2
RcHm_v2.0_Chr1g0357361 Rosa chinensis HOM05D004741 ORTHO05D005454 7.4e-85 318.5 270 60.4
Gohir.A03G000005 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.8e-83 313.9 202 73.3
Gohir.A02G000050 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.2e-82 311.2 202 72.3
Gohir.A09G249600 Gossypium hirsutum HOM05D004741 ORTHO05D005454 4.2e-80 302.8 200 71.5
Cfa025655 Carpinus fangiana HOM05D004741 ORTHO05D005454 1.5e-72 277.7 402 39.6
Haze_27111 Corylus avellana HOM05D004741 ORTHO05D005454 7.2e-72 275.4 296 43.2
PSO210G0837 Papaver somniferum HOM05D004741 ORTHO05D005454 6.1e-63 245.7 165 66.1
Gohir.1Z049489 Gossypium hirsutum HOM05D004741 ORTHO05D005454 4.1e-59 233.0 194 59.8
Gohir.1Z049306 Gossypium hirsutum HOM05D004741 ORTHO05D005454 5.0e-57 226.1 144 72.2
Gohir.1Z049408 Gossypium hirsutum HOM05D004741 ORTHO05D005454 5.0e-57 226.1 144 72.2
Gohir.1Z049565 Gossypium hirsutum HOM05D004741 ORTHO05D005454 5.0e-57 226.1 144 72.2
Gohir.1Z049424 Gossypium hirsutum HOM05D004741 ORTHO05D005454 5.6e-56 222.6 144 71.5
AagrBONN_evm.TU.Sc2ySwM_369.559 Anthoceros agrestis HOM05D004741 ORTHO05D005454 4.4e-53 213.0 244 47.1
Gohir.A07G000083 Gossypium hirsutum HOM05D004741 ORTHO05D005454 4.1e-51 206.5 154 63.0
MD13G1228500 Malus domestica HOM05D004741 ORTHO05D005454 8.9e-46 188.7 119 72.3
Gohir.A12G001050 Gossypium hirsutum HOM05D004741 ORTHO05D005454 5.4e-43 179.5 96 82.3
Gohir.A04G148266 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.0e-41 175.3 179 49.7
Lsat_1_v5_gn_9_90121 Lactuca sativa HOM05D000676 ORTHO05D001458 3.2e-35 153.7 108 66.7
Sopen07g006070 Solanum pennellii HOM05D004741 ORTHO05D005454 5.4e-35 152.9 86 75.6
ATR0582G232 Amborella trichopoda HOM05D004741 ORTHO05D005454 7.8e-34 149.1 100 66.0
Os03g0725300 Oryza sativa ssp. japonica HOM05D004741 ORTHO05D005454 7.1e-27 125.9 84 65.5
Gohir.D12G000832 Gossypium hirsutum HOM05D004741 ORTHO05D005454 8.7e-25 119.0 74 73.0
Gohir.A13G000900 Gossypium hirsutum HOM05D004741 ORTHO05D005454 4.0e-22 110.2 62 75.8
CAN.G1057.23 Capsicum annuum HOM05D004741 ORTHO05D005454 2.6e-13 80.9 92 44.6
PSO541G5767 Papaver somniferum HOM05D001230 ORTHO05D001067 3.4e-13 80.5 48 77.1
SalBow7G3287 Salvia bowleyana HOM05D004741 ORTHO05D005454 3.2e-11 73.9 43 67.4
Pp3c16_14300 Physcomitrium patens HOM05D005251 ORTHO05D006680 5.4e-11 73.2 271 26.9
Actinidia10255 Actinidia chinensis HOM05D004741 ORTHO05D005454 9.6e-08 62.4 36 75.0
Gohir.A02G000100 Gossypium hirsutum HOM05D003958 ORTHO05D005454 4.0e-06 57.0 65 40.0


User provided reference genes

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