Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G17230 Arabidopsis lyrata HOM05D007081 ORTHO05D008834 1.4e-261 906.0 528 100.0
AT4G34140 Arabidopsis thaliana HOM05D007081 ORTHO05D008834 9.6e-231 803.5 532 90.0
Carub.0007s0626 Capsella rubella HOM05D007081 ORTHO05D008834 2.2e-206 722.6 535 83.0
Thhalv10025133m.g Eutrema salsugineum HOM05D007081 ORTHO05D008834 1.6e-185 653.3 535 69.9
Sp7g31890 Schrenkiella parvula HOM05D007081 ORTHO05D008834 1.5e-170 603.6 513 70.4
C01p04690 Brassica napus HOM05D007081 ORTHO05D008834 2.0e-156 556.6 522 65.1
BolC1t00453H Brassica oleracea HOM05D007081 ORTHO05D008834 6.0e-156 555.1 522 64.9
BraA01t00418Z Brassica rapa HOM05D007081 ORTHO05D008834 2.3e-152 543.1 492 64.0
Aa31LG2G16580 Aethionema arabicum HOM05D007081 ORTHO05D008834 5.2e-152 542.0 559 56.7
A01p04290 Brassica napus HOM05D007081 ORTHO05D008834 2.9e-150 536.2 493 63.7
THA.LOC104809251 Tarenaya hassleriana HOM05D007081 ORTHO05D008834 8.9e-136 488.0 543 53.4
CANSAT80G0092 Cannabis sativa HOM05D007081 ORTHO05D008834 8.7e-99 365.2 544 45.2
Thecc.03G023800 Theobroma cacao HOM05D007081 ORTHO05D008834 3.6e-92 343.2 533 43.9
QL10p008493 Quercus lobata HOM05D007081 ORTHO05D008834 6.9e-88 328.9 524 45.2
QL10p008625 Quercus lobata HOM05D007081 ORTHO05D008834 1.2e-87 328.2 524 45.0
Cfa019177 Carpinus fangiana HOM05D007081 ORTHO05D008834 2.0e-87 327.4 529 43.7
Gorai.005G133700 Gossypium raimondii HOM05D007081 ORTHO05D008834 1.3e-86 324.7 533 43.2
TWI39G1151 Tripterygium wilfordii HOM05D007081 ORTHO05D008834 8.5e-86 322.0 536 42.9
Gohir.D02G120200 Gossypium hirsutum HOM05D007081 ORTHO05D008834 1.1e-85 321.6 533 42.8
Haze_07555 Corylus avellana HOM05D007081 ORTHO05D008834 9.4e-85 318.5 515 44.3
Dinv38554 Davidia involucrata HOM05D007081 ORTHO05D008834 4.7e-84 316.2 431 43.6
Duzib205G1440 Durio zibethinus HOM05D007081 ORTHO05D008834 6.1e-84 315.8 566 41.9
Manes.14G062600 Manihot esculenta HOM05D007081 ORTHO05D008834 7.9e-84 315.5 541 43.8
Ciclev10023760m.g Citrus clementina HOM05D007081 ORTHO05D008834 1.4e-83 314.7 539 43.2
TAR629G3400 Trochodendron aralioides HOM05D007081 ORTHO05D008834 8.8e-83 312.0 533 43.7
CAN.G338.9 Capsicum annuum HOM05D007081 ORTHO05D008834 1.3e-81 308.1 524 42.6
Sopen03g031570 Solanum pennellii HOM05D007081 ORTHO05D008834 2.6e-79 300.4 539 42.3
Lsat_1_v5_gn_1_28080 Lactuca sativa HOM05D007081 ORTHO05D008834 7.7e-79 298.9 536 42.5
PGR044G1978 Punica granatum HOM05D007081 ORTHO05D008834 1.3e-78 298.1 544 41.5
DCAR_016469 Daucus carota HOM05D007081 ORTHO05D008834 1.7e-78 297.7 510 43.9
Lj5A128T65 Lonicera japonica HOM05D007081 ORTHO05D008834 3.8e-78 296.6 536 42.2
Solyc03g112510.2 Solanum lycopersicum HOM05D007081 ORTHO05D008834 1.5e-77 294.7 539 41.7
CARHR242710 Cardamine hirsuta HOM05D007081 ORTHO05D008834 1.9e-77 294.3 240 66.7
Potri.002G197500 Populus trichocarpa HOM05D007081 ORTHO05D008834 3.2e-77 293.5 553 41.4
Sabra02G0160000 Salix brachista HOM05D007081 ORTHO05D008834 5.5e-77 292.7 563 42.1
ECA247G4072 Erigeron canadensis HOM05D007081 ORTHO05D008834 1.6e-76 291.2 530 42.3
PGSC0003DMG400018175 Solanum tuberosum HOM05D007081 ORTHO05D008834 1.6e-76 291.2 540 42.2
MD14G1175400 Malus domestica HOM05D007081 ORTHO05D008834 2.1e-76 290.8 519 41.4
FvH4_5g05850 Fragaria vesca HOM05D007081 ORTHO05D008834 4.7e-76 289.7 517 41.0
RcHm_v2.0_Chr7g0192971 Rosa chinensis HOM05D007081 ORTHO05D008834 6.1e-76 289.3 521 42.0
FAN08G1021 Fragaria x ananassa HOM05D007081 ORTHO05D008834 8.0e-76 288.9 521 38.0
GSVIVG01007682001 Vitis vinifera HOM05D007081 ORTHO05D008834 1.0e-75 288.5 532 41.9
Sc04g0001640 Simmondsia chinensis HOM05D007081 ORTHO05D008834 1.4e-75 288.1 503 42.1
TPR.G31056 Trifolium pratense HOM05D007081 ORTHO05D008834 1.4e-75 288.1 571 39.8
Eucgr.K02814 Eucalyptus grandis HOM05D007081 ORTHO05D008834 2.3e-75 287.3 534 39.9
Cc04_g12600 Coffea canephora HOM05D007081 ORTHO05D008834 3.0e-75 287.0 541 41.4
MBI10_g32034_MAGBIO Magnolia biondii HOM05D007081 ORTHO05D008834 3.0e-75 287.0 537 37.1
HanXRQChr04g0101311 Helianthus annuus HOM05D007081 ORTHO05D008834 3.9e-75 286.6 515 41.2
Peaxi162Scf00089g01519 Petunia axillaris HOM05D007081 ORTHO05D008834 6.7e-75 285.8 538 41.3
CiPaw.11G022400 Carya illinoinensis HOM05D007081 ORTHO05D008834 1.1e-74 285.0 530 37.9
vmacro16631 Vaccinium macrocarpon HOM05D007081 ORTHO05D008834 2.8e-73 280.4 426 42.0
Nitab4.5_0010304g0020 Nicotiana tabacum HOM05D007081 ORTHO05D008834 1.1e-72 278.5 530 40.8
Sed0005220 Sechium edule HOM05D007081 ORTHO05D008834 1.4e-72 278.1 577 35.7
SGA_v2.0_scaffold90G27870 Striga asiatica HOM05D007081 ORTHO05D008834 2.4e-72 277.3 452 38.3
PSO063G2349 Papaver somniferum HOM05D007081 ORTHO05D008834 3.1e-72 276.9 530 39.8
Migut.O00134 Erythranthe guttata HOM05D007081 ORTHO05D008834 4.1e-72 276.6 539 40.1
arahy.Tifrunner.gnm1.ann1.4N1ELM Arachis hypogaea HOM05D007081 ORTHO05D008834 5.3e-72 276.2 566 39.4
Rhsim12G0166600 Rhododendron simsii HOM05D007081 ORTHO05D008834 7.0e-72 275.8 530 40.4
Lj1g0004270 Lotus japonicus HOM05D007081 ORTHO05D008834 1.2e-71 275.0 580 39.3
Aqoxy3G02825 Aquilegia oxysepala HOM05D007081 ORTHO05D008834 1.6e-71 274.6 426 40.1
Oeu040853.3 Olea europaea HOM05D007081 ORTHO05D008834 5.9e-71 272.7 550 37.8
Ca_16151_v3 Cicer arietinum L. HOM05D007081 ORTHO05D008834 1.3e-70 271.6 551 39.4
FAN18G1088 Fragaria x ananassa HOM05D007081 ORTHO05D008834 1.5e-69 268.1 562 37.5
Phvul.009G175500 Phaseolus vulgaris HOM05D007081 ORTHO05D008834 3.2e-69 266.9 434 39.4
Lalb_Chr11g0070341 Lupinus albus HOM05D007081 ORTHO05D008834 4.2e-69 266.5 570 38.9
PSO832G3615 Papaver somniferum HOM05D007081 ORTHO05D008834 6.8e-67 259.2 456 38.2
Glyma.04G186500 Glycine max HOM05D007081 ORTHO05D008834 2.0e-66 257.7 455 39.6
Psat0s2597g0120 Pisum sativum HOM05D007081 ORTHO05D008834 2.0e-66 257.7 440 38.9
Hund02770 Selenicereus undatus HOM05D007081 ORTHO05D008834 2.0e-63 247.7 565 38.1
MELO3C026274.2 Cucumis melo HOM05D007081 ORTHO05D008834 3.2e-61 240.4 440 36.1
ATR1152G054 Amborella trichopoda HOM05D007081 ORTHO05D008834 4.2e-61 240.0 543 37.8
Nitab4.5_0001284g0100 Nicotiana tabacum HOM05D007081 ORTHO05D008834 5.5e-61 239.6 326 42.6
arahy.Tifrunner.gnm1.ann1.G5F0QK Arachis hypogaea HOM05D007081 ORTHO05D008834 5.7e-58 229.6 533 37.9
AUR62008170 Chenopodium quinoa HOM05D007081 ORTHO05D008834 1.3e-57 228.4 414 38.9
unitig_26.g9614 Utricularia gibba HOM05D007081 ORTHO05D008834 1.3e-57 228.4 371 38.8
AUR62028747 Chenopodium quinoa HOM05D007081 ORTHO05D008834 6.3e-57 226.1 326 41.7
Medtr3g077300 Medicago truncatula HOM05D007081 ORTHO05D008834 6.3e-57 226.1 435 37.2
CDE06G1300 Ceratophyllum demersum HOM05D007081 ORTHO05D008834 1.8e-56 224.6 521 35.9
CsaV3_1G001260 Cucumis sativus L. HOM05D007081 ORTHO05D008834 1.2e-55 221.9 427 35.6
Cpa.g.sc35.77 Carica papaya HOM05D007081 ORTHO05D008834 6.6e-54 216.1 359 44.0
COL.COLO4_30124 Corchorus olitorius HOM05D007081 ORTHO05D008834 1.5e-53 214.9 541 35.5
Ah.02g110780 Amaranthus hybridus HOM05D007081 ORTHO05D008834 1.9e-53 214.5 493 37.7
HPP92_000312 Vanilla planifolia HOM05D007081 ORTHO05D008834 2.5e-53 214.2 516 35.3
Zm00001eb122970 Zea mays HOM05D007081 ORTHO05D008834 9.5e-53 212.2 527 34.5
EL10Ac5g10689 Beta vulgaris HOM05D007081 ORTHO05D008834 2.6e-50 204.1 558 34.2
ClCG06G017230 Citrullus lanatus HOM05D007081 ORTHO05D008834 2.8e-49 200.7 432 34.0
Os01g0170100 Oryza sativa ssp. japonica HOM05D007081 ORTHO05D008834 4.9e-49 199.9 329 39.5
FAN04G1276 Fragaria x ananassa HOM05D007081 ORTHO05D008834 1.7e-46 191.4 519 32.0
Gohir.A03G091750 Gossypium hirsutum HOM05D007081 ORTHO05D008834 7.3e-45 186.0 309 45.6
HPP92_000296 Vanilla planifolia HOM05D007081 ORTHO05D008834 1.3e-41 175.3 516 32.9
SEGI_13994 Sequoiadendron giganteum HOM05D007081 ORTHO05D008834 3.5e-39 167.2 465 29.7
CSS0021917 Camellia sinensis var. sinensis HOM05D007081 ORTHO05D008834 7.8e-39 166.0 309 37.9
CSS0002377 Camellia sinensis var. sinensis HOM05D007081 ORTHO05D008834 6.6e-38 162.9 214 45.8
AagrBONN_evm.TU.Sc2ySwM_117.2172 Anthoceros agrestis HOM05D007081 ORTHO05D008834 8.6e-38 162.5 511 27.6
Mapoly0102s0046 Marchantia polymorpha HOM05D007081 ORTHO05D008834 3.3e-37 160.6 555 28.5
HPP92_000303 Vanilla planifolia HOM05D007081 ORTHO05D008834 4.1e-32 143.7 312 39.4
Pp3c25_4990 Physcomitrium patens HOM05D007081 ORTHO05D008834 7.8e-31 139.4 336 29.8
Prupe.5G169300 Prunus persica HOM05D007081 ORTHO05D008834 1.7e-30 138.3 281 42.0
Cpa.g.sc35.79 Carica papaya HOM05D007081 ORTHO05D008834 9.5e-29 132.5 114 59.6
Glyma.06G179301 Glycine max HOM05D007081 ORTHO05D008834 2.1e-23 114.8 270 32.6
CBR_g4092 Chara braunii HOM05D007081 ORTHO05D000048 2.5e-21 107.8 402 25.6
CSS0048681 Camellia sinensis var. sinensis HOM05D007081 ORTHO05D008834 3.4e-18 97.4 58 77.6
HPP92_000304 Vanilla planifolia HOM05D007081 ORTHO05D008834 7.6e-18 96.3 107 49.5
SGA_v2.0_scaffold90G27873 Striga asiatica HOM05D007081 ORTHO05D008834 9.9e-18 95.9 206 32.0
CSS0035417 Camellia sinensis var. sinensis HOM05D007081 ORTHO05D008834 2.5e-13 81.3 58 69.0
Oeu015893.1 Olea europaea HOM05D007081 ORTHO05D008834 2.4e-11 74.7 171 33.3
arahy.Tifrunner.gnm1.ann1.JE9H0F Arachis hypogaea HOM05D007081 ORTHO05D008834 2.0e-10 71.6 70 52.9
CAN.G12.29 Capsicum annuum HOM05D001989 ORTHO05D000346 4.9e-09 67.0 187 42.8
Nitab4.5_0022301g0010 Nicotiana tabacum HOM05D007081 ORTHO05D008834 8.4e-09 66.2 201 39.8
SEGI_21151 Sequoiadendron giganteum HOM05D007081 ORTHO05D008834 1.1e-08 65.9 76 50.0
Actinidia22110 Actinidia chinensis HOM05D005384 ORTHO05D006477 5.4e-08 63.5 110 32.7
A09p47220 Brassica napus HOM05D005384 ORTHO05D006477 7.1e-08 63.2 133 35.3
BcaNung06989 Brassica carinata HOM05D005384 ORTHO05D006477 9.3e-08 62.8 133 34.6
C08p29480 Brassica napus HOM05D005384 ORTHO05D006477 9.3e-08 62.8 133 34.6
BolC8t50551H Brassica oleracea HOM05D005384 ORTHO05D006477 9.3e-08 62.8 133 34.6
BraA09t40184Z Brassica rapa HOM05D005384 ORTHO05D006477 1.6e-07 62.0 133 34.6
Manes.02G081900 Manihot esculenta HOM05D005384 ORTHO05D006477 3.5e-07 60.8 134 32.8
CARHR164150 Cardamine hirsuta HOM05D005384 ORTHO05D006477 4.6e-07 60.5 133 35.3
Potri.004G081800 Populus trichocarpa HOM05D005384 ORTHO05D006477 4.6e-07 60.5 132 32.6
Potri.017G138500 Populus trichocarpa HOM05D005384 ORTHO05D006477 4.6e-07 60.5 123 33.3
PSO063G3637 Papaver somniferum HOM05D005384 ORTHO05D006477 6.0e-07 60.1 131 31.3
vmacro14142 Vaccinium macrocarpon HOM05D005384 ORTHO05D006477 6.0e-07 60.1 125 32.0
PSO782G4681 Papaver somniferum HOM05D005384 ORTHO05D006477 7.9e-07 59.7 131 31.3
Sabra04G0054400 Salix brachista HOM05D005384 ORTHO05D006477 7.9e-07 59.7 123 32.5
Carub.0005s2082 Capsella rubella HOM05D005384 ORTHO05D006477 1.0e-06 59.3 135 33.3
Sp5g08170 Schrenkiella parvula HOM05D005384 ORTHO05D006477 1.0e-06 59.3 135 33.3
AT3G54230 Arabidopsis thaliana HOM05D005384 ORTHO05D006477 1.3e-06 58.9 135 33.3
Thhalv10010093m.g Eutrema salsugineum HOM05D005384 ORTHO05D006477 1.3e-06 58.9 136 33.8
AL5G35270 Arabidopsis lyrata HOM05D005384 ORTHO05D006477 1.7e-06 58.5 135 33.3
Nitab4.5_0009567g0040 Nicotiana tabacum HOM05D005384 ORTHO05D006477 1.7e-06 58.5 127 33.9
Aa31LG10G6030 Aethionema arabicum HOM05D005384 ORTHO05D006477 2.3e-06 58.2 126 34.1
Nitab4.5_0002055g0100 Nicotiana tabacum HOM05D005384 ORTHO05D006477 2.3e-06 58.2 127 33.9
Lalb_Chr16g0391981 Lupinus albus HOM05D005384 ORTHO05D006477 3.0e-06 57.8 140 32.1
Solyc08g077310.3 Solanum lycopersicum HOM05D005384 ORTHO05D006477 3.0e-06 57.8 127 33.9
SGA_v2.0_scaffold14G06795 Striga asiatica HOM05D005384 ORTHO05D006477 3.0e-06 57.8 131 31.3
ECA246G0264 Erigeron canadensis HOM05D005384 ORTHO05D006477 3.9e-06 57.4 125 32.0
Medtr8g070990 Medicago truncatula HOM05D005384 ORTHO05D006477 3.9e-06 57.4 128 32.0
arahy.Tifrunner.gnm1.ann1.EB4ABC Arachis hypogaea HOM05D005384 ORTHO05D006477 6.6e-06 56.6 128 32.0
arahy.Tifrunner.gnm1.ann1.R6E3N5 Arachis hypogaea HOM05D005384 ORTHO05D006477 6.6e-06 56.6 128 32.0
Lsat_1_v5_gn_3_16520 Lactuca sativa HOM05D005384 ORTHO05D006477 6.6e-06 56.6 126 33.3
SMO367G0074 Selaginella moellendorffii HOM05D005384 ORTHO05D006477 8.7e-06 56.2 103 36.9


User provided reference genes

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