Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G46730 Arabidopsis lyrata HOM05D003763 ORTHO05D004315 1.2e-156 556.6 311 100.0
AT4G11960 Arabidopsis thaliana HOM05D003763 ORTHO05D004315 8.9e-152 540.4 314 97.1
Carub.0006s3106 Capsella rubella HOM05D003763 ORTHO05D004315 3.1e-144 515.4 316 92.7
CARHR254330 Cardamine hirsuta HOM05D003763 ORTHO05D004315 2.6e-143 512.3 314 92.4
Sp6g05550 Schrenkiella parvula HOM05D003763 ORTHO05D004315 4.9e-142 508.1 323 89.2
BcaB01g02662 Brassica carinata HOM05D003763 ORTHO05D004315 4.2e-141 505.0 318 89.9
Thhalv10028695m.g Eutrema salsugineum HOM05D003763 ORTHO05D004315 5.4e-141 504.6 321 89.4
BolC3t15881H Brassica oleracea HOM05D003763 ORTHO05D004315 1.0e-139 500.4 317 89.6
BcaC01g04611 Brassica carinata HOM05D003763 ORTHO05D004315 3.9e-139 498.4 317 89.3
C03p35720 Brassica napus HOM05D003763 ORTHO05D004315 3.9e-139 498.4 317 89.3
A03p29510 Brassica napus HOM05D003763 ORTHO05D004315 2.0e-135 486.1 317 88.0
BraA03t12145Z Brassica rapa HOM05D003763 ORTHO05D004315 2.0e-135 486.1 317 88.0
Aa31LG9G10510 Aethionema arabicum HOM05D003763 ORTHO05D004315 4.9e-134 481.5 323 85.8
THA.LOC104806356 Tarenaya hassleriana HOM05D003763 ORTHO05D004315 1.0e-131 473.8 321 84.4
THA.LOC104814132 Tarenaya hassleriana HOM05D003763 ORTHO05D004315 2.1e-129 466.1 321 84.4
Sp7g20960 Schrenkiella parvula HOM05D003763 ORTHO05D004315 2.6e-127 459.1 321 81.9
Aa31LG6G4960 Aethionema arabicum HOM05D003763 ORTHO05D004315 8.4e-126 454.1 325 81.2
A01p14110 Brassica napus HOM05D003763 ORTHO05D004315 4.2e-125 451.8 313 83.4
BraA01t01359Z Brassica rapa HOM05D003763 ORTHO05D004315 4.2e-125 451.8 313 83.4
BcaC09g51065 Brassica carinata HOM05D003763 ORTHO05D004315 5.5e-125 451.4 313 83.1
Thhalv10025739m.g Eutrema salsugineum HOM05D003763 ORTHO05D004315 9.3e-125 450.7 316 82.6
AT4G22890 Arabidopsis thaliana HOM05D003763 ORTHO05D004315 1.6e-124 449.9 321 79.8
A03p53850 Brassica napus HOM05D003763 ORTHO05D004315 2.7e-124 449.1 315 81.0
C01p17370 Brassica napus HOM05D003763 ORTHO05D004315 2.7e-124 449.1 313 82.7
BolC1t01675H Brassica oleracea HOM05D003763 ORTHO05D004315 2.7e-124 449.1 313 82.7
BcaNung01019 Brassica carinata HOM05D003763 ORTHO05D004315 4.6e-124 448.4 311 83.0
C07p52250 Brassica napus HOM05D003763 ORTHO05D004315 7.9e-124 447.6 317 80.1
Carub.0007s1839 Capsella rubella HOM05D003763 ORTHO05D004315 1.0e-123 447.2 319 82.1
BolC7t45719H Brassica oleracea HOM05D003763 ORTHO05D004315 2.3e-123 446.0 317 80.1
BcaNung01664 Brassica carinata HOM05D003763 ORTHO05D004315 1.9e-117 426.4 276 85.5
CARHR229930 Cardamine hirsuta HOM05D003763 ORTHO05D004315 2.1e-116 422.9 318 78.6
COL.COLO4_23800 Corchorus olitorius HOM05D003763 ORTHO05D004315 2.7e-116 422.5 319 76.8
TWI81G0532 Tripterygium wilfordii HOM05D003763 ORTHO05D004315 4.6e-116 421.8 321 75.4
TWI60G0957 Tripterygium wilfordii HOM05D003763 ORTHO05D004315 6.1e-116 421.4 321 76.0
Thecc.03G267900 Theobroma cacao HOM05D003763 ORTHO05D004315 1.0e-115 420.6 315 76.2
Gohir.D08G195200 Gossypium hirsutum HOM05D003763 ORTHO05D004315 2.5e-114 416.0 318 76.4
Cpa.g.sc29.40 Carica papaya HOM05D003763 ORTHO05D004315 9.7e-114 414.1 316 76.3
Gorai.004G206000 Gossypium raimondii HOM05D003763 ORTHO05D004315 1.6e-113 413.3 324 75.3
Manes.01G070000 Manihot esculenta HOM05D003763 ORTHO05D004315 1.6e-113 413.3 321 75.1
Lj4g0003870 Lotus japonicus HOM05D003763 ORTHO05D004315 3.7e-113 412.1 322 74.8
CANSAT21G0452 Cannabis sativa HOM05D003763 ORTHO05D004315 3.1e-112 409.1 320 75.9
CSS0018103 Camellia sinensis var. sinensis HOM05D003763 ORTHO05D004315 4.1e-112 408.7 324 72.8
BraA03t14454Z Brassica rapa HOM05D003763 ORTHO05D004315 5.3e-112 408.3 293 80.5
Phvul.003G213900 Phaseolus vulgaris HOM05D003763 ORTHO05D004315 6.9e-112 407.9 321 75.1
Dinv37708 Davidia involucrata HOM05D003763 ORTHO05D004315 9.0e-112 407.5 320 74.4
Duzib084G0949 Durio zibethinus HOM05D003763 ORTHO05D004315 9.0e-112 407.5 315 75.2
Ca_20236_v3 Cicer arietinum L. HOM05D003763 ORTHO05D004315 1.5e-111 406.8 318 75.8
Cfa012069 Carpinus fangiana HOM05D003763 ORTHO05D004315 2.0e-111 406.4 323 75.5
Duzib205G0169 Durio zibethinus HOM05D003763 ORTHO05D004315 2.0e-111 406.4 315 76.2
Glyma.05G051300 Glycine max HOM05D003763 ORTHO05D004315 2.6e-111 406.0 316 75.3
GSVIVG01019890001 Vitis vinifera HOM05D003763 ORTHO05D004315 3.4e-111 405.6 318 75.2
Glyma.17G133200 Glycine max HOM05D003763 ORTHO05D004315 5.9e-111 404.8 287 81.5
Lalb_Chr05g0214701 Lupinus albus HOM05D003763 ORTHO05D004315 5.9e-111 404.8 314 74.8
Ciclev10021127m.g Citrus clementina HOM05D003763 ORTHO05D004315 1.0e-110 404.1 297 78.8
arahy.Tifrunner.gnm1.ann1.QN4KPS Arachis hypogaea HOM05D003763 ORTHO05D004315 2.2e-110 402.9 329 73.9
Medtr4g102440 Medicago truncatula HOM05D003763 ORTHO05D004315 5.0e-110 401.7 313 75.4
Oeu056817.1 Olea europaea HOM05D003763 ORTHO05D004315 5.0e-110 401.7 329 70.8
Potri.001G113000 Populus trichocarpa HOM05D003763 ORTHO05D004315 5.0e-110 401.7 324 72.5
Gorai.008G242200 Gossypium raimondii HOM05D003763 ORTHO05D004315 2.5e-109 399.4 313 74.8
MELO3C014009.2 Cucumis melo HOM05D003763 ORTHO05D004315 3.2e-109 399.1 301 76.4
CsaV3_3G003430 Cucumis sativus L. HOM05D003763 ORTHO05D004315 3.2e-109 399.1 307 75.2
Gohir.D12G226200 Gossypium hirsutum HOM05D003763 ORTHO05D004315 3.2e-109 399.1 313 74.8
Prupe.5G086900 Prunus persica HOM05D003763 ORTHO05D004315 5.5e-109 398.3 318 74.2
VMungo1215G3348 Vigna mungo HOM05D003763 ORTHO05D004315 5.5e-109 398.3 354 68.6
CAN.G1394.10 Capsicum annuum HOM05D003763 ORTHO05D004315 7.2e-109 397.9 299 76.6
Eucgr.D01944 Eucalyptus grandis HOM05D003763 ORTHO05D004315 7.2e-109 397.9 319 72.7
vmacro14015 Vaccinium macrocarpon HOM05D003763 ORTHO05D004315 7.2e-109 397.9 336 72.9
TAR629G0773 Trochodendron aralioides HOM05D003763 ORTHO05D004315 9.4e-109 397.5 323 71.8
Sed0026462 Sechium edule HOM05D003763 ORTHO05D004315 1.2e-108 397.1 311 72.7
CSS0001568 Camellia sinensis var. sinensis HOM05D003763 ORTHO05D004315 1.6e-108 396.7 317 74.1
FAN04G0845 Fragaria x ananassa HOM05D003763 ORTHO05D004315 1.6e-108 396.7 321 72.3
Atru.chr9.1500 Acer truncatum HOM05D003763 ORTHO05D004315 2.1e-108 396.4 319 75.2
MD04G1071000 Malus domestica HOM05D003763 ORTHO05D004315 2.1e-108 396.4 321 73.5
Peaxi162Scf00102g01354 Petunia axillaris HOM05D003763 ORTHO05D004315 2.7e-108 396.0 321 71.3
Nn1g01278 Nelumbo nucifera HOM05D003763 ORTHO05D004315 4.6e-108 395.2 318 74.5
Nitab4.5_0010547g0050 Nicotiana tabacum HOM05D003763 ORTHO05D004315 4.6e-108 395.2 326 71.8
FAN08G0919 Fragaria x ananassa HOM05D003763 ORTHO05D004315 6.1e-108 394.8 323 73.1
TPR.G37646 Trifolium pratense HOM05D003763 ORTHO05D004315 7.9e-108 394.4 327 71.3
EL10Ac5g12684 Beta vulgaris HOM05D003763 ORTHO05D004315 1.4e-107 393.7 321 71.7
FvH4_5g01180 Fragaria vesca HOM05D003763 ORTHO05D004315 1.8e-107 393.3 322 72.7
Oeu021144.1 Olea europaea HOM05D003763 ORTHO05D004315 1.8e-107 393.3 284 77.1
Potri.003G119200 Populus trichocarpa HOM05D003763 ORTHO05D004315 1.8e-107 393.3 324 72.2
Hund14702 Selenicereus undatus HOM05D003763 ORTHO05D004315 1.8e-107 393.3 296 75.3
PGSC0003DMG400022731 Solanum tuberosum HOM05D003763 ORTHO05D004315 1.8e-107 393.3 317 72.9
Sabra03G0083200 Salix brachista HOM05D003763 ORTHO05D004315 2.3e-107 392.9 321 72.6
FAN18G3786 Fragaria x ananassa HOM05D003763 ORTHO05D004315 3.0e-107 392.5 324 72.2
Sopen08g003700 Solanum pennellii HOM05D003763 ORTHO05D004315 3.0e-107 392.5 313 73.2
Sc22g0000420 Simmondsia chinensis HOM05D003763 ORTHO05D004315 3.9e-107 392.1 322 71.4
PGSC0003DMG400012494 Solanum tuberosum HOM05D003763 ORTHO05D004315 3.9e-107 392.1 299 75.6
FAN13G2490 Fragaria x ananassa HOM05D003763 ORTHO05D004315 5.1e-107 391.7 322 72.4
Ah.12g057870 Amaranthus hybridus HOM05D003763 ORTHO05D004315 6.7e-107 391.3 320 72.2
CAN.G981.62 Capsicum annuum HOM05D003763 ORTHO05D004315 6.7e-107 391.3 309 72.5
Cc08_g13730 Coffea canephora HOM05D003763 ORTHO05D004315 8.8e-107 391.0 320 73.8
TAR622G0836 Trochodendron aralioides HOM05D003763 ORTHO05D004315 8.8e-107 391.0 331 71.0
DCAR_000890 Daucus carota HOM05D003763 ORTHO05D004315 1.5e-106 390.2 317 72.6
CDE04G2291 Ceratophyllum demersum HOM05D003763 ORTHO05D004315 2.5e-106 389.4 277 78.7
CiPaw.12G101000 Carya illinoinensis HOM05D003763 ORTHO05D004315 3.3e-106 389.0 326 72.1
SalBow6G0972 Salvia bowleyana HOM05D003763 ORTHO05D004315 5.7e-106 388.3 320 72.5
Lsat_1_v5_gn_6_78800 Lactuca sativa HOM05D003763 ORTHO05D004315 9.7e-106 387.5 323 70.9
Psat4g068320 Pisum sativum HOM05D003763 ORTHO05D004315 1.3e-105 387.1 317 71.3
Sopen08g028400 Solanum pennellii HOM05D003763 ORTHO05D004315 1.3e-105 387.1 317 71.3
RcHm_v2.0_Chr7g0199911 Rosa chinensis HOM05D003763 ORTHO05D004315 2.8e-105 386.0 321 72.0
MSTRG.13805 Avicennia marina HOM05D003763 ORTHO05D004315 6.3e-105 384.8 323 70.0
Migut.A00895 Erythranthe guttata HOM05D003763 ORTHO05D004315 8.2e-105 384.4 313 70.9
VMungo1215G1438 Vigna mungo HOM05D003763 ORTHO05D004315 2.4e-104 382.9 320 69.4
Migut.E01271 Erythranthe guttata HOM05D003763 ORTHO05D004315 4.1e-104 382.1 320 71.2
Hma1.2p1_0138F.1_g062780 Hydrangea macrophylla HOM05D003763 ORTHO05D004315 4.1e-104 382.1 331 70.1
arahy.Tifrunner.gnm1.ann1.RZ3A35 Arachis hypogaea HOM05D003763 ORTHO05D004315 5.3e-104 381.7 324 72.2
Migut.E01022 Erythranthe guttata HOM05D003763 ORTHO05D004315 6.9e-104 381.3 303 72.9
Glyma.01G214300 Glycine max HOM05D003763 ORTHO05D004315 6.9e-104 381.3 317 70.7
Rhsim07G0096500 Rhododendron simsii HOM05D003763 ORTHO05D004315 6.9e-104 381.3 376 65.2
arahy.Tifrunner.gnm1.ann1.HFU20B Arachis hypogaea HOM05D003763 ORTHO05D004315 9.1e-104 380.9 325 72.6
Aqoxy7G00504 Aquilegia oxysepala HOM05D003763 ORTHO05D004315 2.6e-103 379.4 320 69.4
AUR62010559 Chenopodium quinoa HOM05D003763 ORTHO05D004315 2.6e-103 379.4 312 70.8
HanXRQChr13g0414021 Helianthus annuus HOM05D003763 ORTHO05D004315 3.4e-103 379.0 282 77.3
Sed0016409 Sechium edule HOM05D003763 ORTHO05D004315 7.7e-103 377.9 320 69.4
AUR62017330 Chenopodium quinoa HOM05D003763 ORTHO05D004315 5.0e-102 375.2 312 70.5
ECA240G4155 Erigeron canadensis HOM05D003763 ORTHO05D004315 5.0e-102 375.2 324 69.1
Ca_24565_v3 Cicer arietinum L. HOM05D003763 ORTHO05D004315 1.1e-101 374.0 317 70.0
Lsat_1_v5_gn_6_8180 Lactuca sativa HOM05D003763 ORTHO05D004315 4.2e-101 372.1 316 69.0
Actinidia27416 Actinidia chinensis HOM05D003763 ORTHO05D004315 1.2e-100 370.5 254 83.5
ClCG00G002290 Citrullus lanatus HOM05D003763 ORTHO05D004315 2.7e-100 369.4 294 74.5
Medtr5g011220 Medicago truncatula HOM05D003763 ORTHO05D004315 2.7e-100 369.4 314 70.7
PSO478G4698 Papaver somniferum HOM05D003763 ORTHO05D004315 4.7e-100 368.6 319 69.0
Phvul.002G152800 Phaseolus vulgaris HOM05D003763 ORTHO05D004315 4.7e-100 368.6 275 74.5
PGR031G0886 Punica granatum HOM05D003763 ORTHO05D004315 6.1e-100 368.2 309 72.5
Lj2g0000892 Lotus japonicus HOM05D003763 ORTHO05D004315 7.9e-100 367.9 315 70.8
PSO782G5713 Papaver somniferum HOM05D003763 ORTHO05D004315 1.8e-99 366.7 320 68.8
unitig_52.g17229 Utricularia gibba HOM05D003763 ORTHO05D004315 3.0e-99 365.9 266 78.6
Nitab4.5_0001200g0070 Nicotiana tabacum HOM05D003763 ORTHO05D004315 4.4e-98 362.1 257 69.6
Nitab4.5_0002886g0120 Nicotiana tabacum HOM05D003763 ORTHO05D004315 5.7e-98 361.7 301 64.5
SalBow1G0491 Salvia bowleyana HOM05D003763 ORTHO05D004315 7.4e-98 361.3 289 73.7
AL7G30630 Arabidopsis lyrata HOM05D003763 ORTHO05D004315 1.7e-97 360.1 231 89.2
Lj8C243T4 Lonicera japonica HOM05D003763 ORTHO05D004315 2.8e-97 359.4 262 79.8
Solyc08g007770.4 Solanum lycopersicum HOM05D003763 ORTHO05D004315 5.9e-95 351.7 297 71.7
ATR0661G459 Amborella trichopoda HOM05D003763 ORTHO05D004315 7.7e-95 351.3 275 73.5
Solyc08g080050.4 Solanum lycopersicum HOM05D003763 ORTHO05D004315 1.5e-93 347.1 291 71.5
Zm00001eb064990 Zea mays HOM05D003763 ORTHO05D004315 2.7e-92 342.8 281 69.8
HanXRQChr03g0084111 Helianthus annuus HOM05D003763 ORTHO05D004315 1.4e-91 340.5 262 75.2
Os03g0857400 Oryza sativa ssp. japonica HOM05D003763 ORTHO05D004315 1.4e-91 340.5 273 71.4
Gohir.A08G176900 Gossypium hirsutum HOM05D003763 ORTHO05D004315 8.8e-91 337.8 231 84.8
Lj2A202G55 Lonicera japonica HOM05D003763 ORTHO05D004315 1.1e-90 337.4 273 70.0
Actinidia14012 Actinidia chinensis HOM05D003763 ORTHO05D004315 7.4e-90 334.7 250 78.8
arahy.Tifrunner.gnm1.ann1.N69HTX Arachis hypogaea HOM05D003763 ORTHO05D004315 7.7e-87 324.7 329 64.1
Nitab4.5_0003274g0090 Nicotiana tabacum HOM05D003763 ORTHO05D004315 4.2e-85 318.9 316 55.4
Haze_08989 Corylus avellana HOM05D003763 ORTHO05D004315 1.6e-84 317.0 310 66.5
SEGI_18243 Sequoiadendron giganteum HOM05D003763 ORTHO05D004315 1.6e-84 317.0 272 64.7
Mapoly0048s0082 Marchantia polymorpha HOM05D003763 ORTHO05D004315 2.7e-84 316.2 310 61.6
Pp3c10_15390 Physcomitrium patens HOM05D003763 ORTHO05D004315 8.8e-83 311.2 262 66.4
Peaxi162Scf00620g00056 Petunia axillaris HOM05D003763 ORTHO05D004315 2.8e-81 306.2 352 58.0
ClCG00G000150 Citrullus lanatus HOM05D003763 ORTHO05D004315 3.1e-80 302.8 318 61.0
ClCG10G003400 Citrullus lanatus HOM05D003763 ORTHO05D004315 3.1e-80 302.8 318 61.0
AagrBONN_evm.TU.Sc2ySwM_362.2619 Anthoceros agrestis HOM05D003763 ORTHO05D004315 4.4e-74 282.3 250 58.8
SMO356G0021 Selaginella moellendorffii HOM05D003763 ORTHO05D004315 1.7e-73 280.4 250 56.4
Psat6g136800 Pisum sativum HOM05D003763 ORTHO05D004315 3.5e-71 272.7 196 81.6
Psat2g180880 Pisum sativum HOM05D003763 ORTHO05D004315 7.7e-71 271.6 250 68.8
unitig_699.g19760 Utricularia gibba HOM05D003763 ORTHO05D004315 1.7e-70 270.4 201 80.1
Actinidia05236 Actinidia chinensis HOM05D003763 ORTHO05D004315 7.2e-69 265.0 247 59.5
CiPaw.11G143200 Carya illinoinensis HOM05D003763 ORTHO05D004315 8.9e-67 258.1 232 72.4
Dinv39038 Davidia involucrata HOM05D003763 ORTHO05D004315 1.5e-66 257.3 241 71.4
CBR_g23735 Chara braunii HOM05D003763 ORTHO05D004315 1.5e-61 240.7 316 43.0
Cre07.g340200 Chlamydomonas reinhardtii HOM05D003763 ORTHO05D004315 5.4e-56 222.2 266 50.4
Zm00001eb065010 Zea mays HOM05D003763 ORTHO05D004315 5.6e-53 212.2 149 71.1
CDE07G1293 Ceratophyllum demersum HOM05D003763 ORTHO05D004315 4.9e-49 199.1 125 77.6
Gohir.A12G223632 Gossypium hirsutum HOM05D003763 ORTHO05D004315 1.7e-46 190.7 124 76.6
Glyma.12G170600 Glycine max HOM05D003763 ORTHO05D004315 8.6e-46 188.3 149 64.4
MSTRG.12034 Avicennia marina HOM05D003763 ORTHO05D004315 7.3e-45 185.3 176 71.0
CDE07G1747 Ceratophyllum demersum HOM05D003763 ORTHO05D004315 5.2e-43 179.1 165 71.5
Gohir.A12G223566 Gossypium hirsutum HOM05D003763 ORTHO05D004315 2.2e-41 173.7 124 69.4
HPP92_014954 Vanilla planifolia HOM05D003763 ORTHO05D004315 1.7e-33 147.5 100 79.0
BcaC02g09855 Brassica carinata HOM05D003763 ORTHO05D004315 2.9e-33 146.7 168 60.7
Zm00001eb305640 Zea mays HOM05D003763 ORTHO05D004315 3.5e-31 139.8 78 85.9
Lsat_1_v5_gn_8_1701 Lactuca sativa HOM05D003763 ORTHO05D004315 2.3e-30 137.1 96 71.9
TPR.G14577 Trifolium pratense HOM05D003763 ORTHO05D004315 2.3e-30 137.1 108 74.1
Actinidia02868 Actinidia chinensis HOM05D003763 ORTHO05D004315 3.9e-30 136.3 262 38.2
C04p35880 Brassica napus HOM05D003763 ORTHO05D004315 9.3e-24 115.2 169 55.6
Zm00001eb065020 Zea mays HOM05D003763 ORTHO05D004315 2.1e-23 114.0 91 64.8
Pp3c3_19870 Physcomitrium patens HOM05D003763 ORTHO05D004315 6.4e-17 92.4 107 65.4
Os08g0526300 Oryza sativa ssp. japonica HOM05D003763 ORTHO05D004315 5.5e-16 89.4 83 79.5
TPR.G23383 Trifolium pratense HOM05D003424 ORTHO05D004025 3.5e-15 86.7 122 46.7
BolC4t25212H Brassica oleracea HOM05D003763 ORTHO05D004315 1.3e-12 78.2 71 57.7
arahy.Tifrunner.gnm1.ann1.AG3Z3P Arachis hypogaea HOM05D003763 ORTHO05D004315 1.4e-08 64.7 93 40.9


User provided reference genes

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