Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G40860 Arabidopsis lyrata HOM05D002708 ORTHO05D003516 3.1e-150 535.0 260 100.0
AT5G25780 Arabidopsis thaliana HOM05D002708 ORTHO05D003516 8.0e-29 131.7 161 49.7
Thhalv10000061m.g Eutrema salsugineum HOM05D002708 ORTHO05D003516 1.0e-28 131.3 157 51.6
AL6G39390 Arabidopsis lyrata HOM05D002708 ORTHO05D003516 1.8e-28 130.6 161 50.3
Sp4g03800 Schrenkiella parvula HOM05D002708 ORTHO05D003516 4.0e-28 129.4 161 50.3
AL6G37640 Arabidopsis lyrata HOM05D002708 ORTHO05D003516 6.8e-28 128.6 161 49.1
CARHR294550 Cardamine hirsuta HOM05D002708 ORTHO05D003516 6.8e-28 128.6 165 48.5
C08p39040 Brassica napus HOM05D002708 ORTHO05D003516 1.5e-27 127.5 161 50.3
BolC8t51477H Brassica oleracea HOM05D002708 ORTHO05D003516 1.5e-27 127.5 161 50.3
AT5G27640 Arabidopsis thaliana HOM05D002708 ORTHO05D003516 3.4e-27 126.3 161 48.4
A09p56110 Brassica napus HOM05D002708 ORTHO05D003516 5.7e-27 125.6 161 49.7
BraA09t41006Z Brassica rapa HOM05D002708 ORTHO05D003516 5.7e-27 125.6 161 49.7
Carub.0006s2495 Capsella rubella HOM05D002708 ORTHO05D003516 7.5e-27 125.2 161 47.8
BcaB06g28016 Brassica carinata HOM05D002708 ORTHO05D003516 1.3e-26 124.4 161 49.1
BcaC02g08409 Brassica carinata HOM05D002708 ORTHO05D003516 1.3e-26 124.4 161 49.1
BolC4t27001H Brassica oleracea HOM05D002708 ORTHO05D003516 1.3e-26 124.4 161 49.1
BcaC07g40905 Brassica carinata HOM05D002708 ORTHO05D003516 3.7e-26 122.9 161 50.3
A04p19190 Brassica napus HOM05D002708 ORTHO05D003516 3.7e-26 122.9 161 48.4
BraA04t17520Z Brassica rapa HOM05D002708 ORTHO05D003516 3.7e-26 122.9 161 48.4
C04p54590 Brassica napus HOM05D002708 ORTHO05D003516 4.1e-25 119.4 161 47.8
THA.LOC104803605 Tarenaya hassleriana HOM05D002708 ORTHO05D003516 1.7e-23 114.0 159 48.4
Manes.16G132500 Manihot esculenta HOM05D002708 ORTHO05D003516 7.3e-22 108.6 159 45.3
Atru.chr7.2587 Acer truncatum HOM05D002708 ORTHO05D003516 1.6e-21 107.5 159 45.3
arahy.Tifrunner.gnm1.ann1.9YLT9A Arachis hypogaea HOM05D002708 ORTHO05D003516 2.1e-21 107.1 159 44.7
arahy.Tifrunner.gnm1.ann1.V30RJW Arachis hypogaea HOM05D002708 ORTHO05D003516 2.1e-21 107.1 159 44.7
Lalb_Chr08g0244681 Lupinus albus HOM05D002708 ORTHO05D003516 2.1e-21 107.1 159 44.0
Lalb_Chr23g0268061 Lupinus albus HOM05D002708 ORTHO05D003516 2.1e-21 107.1 159 45.3
SalBow5G4312 Salvia bowleyana HOM05D002708 ORTHO05D003516 2.1e-21 107.1 157 43.9
Aa31LG1G4150 Aethionema arabicum HOM05D002708 ORTHO05D003516 2.8e-21 106.7 162 45.7
Lj1g0003503 Lotus japonicus HOM05D002708 ORTHO05D003516 2.8e-21 106.7 159 44.7
Os10g0569200 Oryza sativa ssp. japonica HOM05D002708 ORTHO05D003516 2.8e-21 106.7 157 43.3
MD04G1241100 Malus domestica HOM05D002708 ORTHO05D003516 3.6e-21 106.3 157 42.7
Ciclev10007609m.g Citrus clementina HOM05D002708 ORTHO05D003516 4.7e-21 105.9 159 44.7
Sed0015739 Sechium edule HOM05D002708 ORTHO05D003516 4.7e-21 105.9 159 44.0
GSVIVG01036012001 Vitis vinifera HOM05D002708 ORTHO05D003516 4.7e-21 105.9 158 44.9
Phvul.009G084100 Phaseolus vulgaris HOM05D002708 ORTHO05D003516 6.1e-21 105.5 159 44.0
QL02p018118 Quercus lobata HOM05D002708 ORTHO05D003516 6.1e-21 105.5 159 44.7
Cfa013020 Carpinus fangiana HOM05D002708 ORTHO05D003516 8.0e-21 105.1 159 44.0
Eucgr.J02249 Eucalyptus grandis HOM05D002708 ORTHO05D003516 8.0e-21 105.1 158 44.3
Glyma.03G002400 Glycine max HOM05D002708 ORTHO05D003516 8.0e-21 105.1 159 44.0
PGSC0003DMG400001674 Solanum tuberosum HOM05D002708 ORTHO05D003516 8.0e-21 105.1 158 42.4
Glyma.07G107700 Glycine max HOM05D002708 ORTHO05D003516 1.0e-20 104.8 159 44.0
Nn4g24628 Nelumbo nucifera HOM05D002708 ORTHO05D003516 1.0e-20 104.8 158 44.3
Solyc01g088370.3 Solanum lycopersicum HOM05D002708 ORTHO05D003516 1.0e-20 104.8 158 43.0
Sopen01g035200 Solanum pennellii HOM05D002708 ORTHO05D003516 1.0e-20 104.8 158 43.0
COL.COLO4_17667 Corchorus olitorius HOM05D002708 ORTHO05D003516 1.4e-20 104.4 159 42.8
Oeu002888.1 Olea europaea HOM05D002708 ORTHO05D003516 1.4e-20 104.4 158 44.3
VMungo1309G2216 Vigna mungo HOM05D002708 ORTHO05D003516 1.4e-20 104.4 159 43.4
Gohir.A12G046100 Gossypium hirsutum HOM05D002708 ORTHO05D003516 1.8e-20 104.0 159 44.0
Potri.006G267500 Populus trichocarpa HOM05D002708 ORTHO05D003516 2.3e-20 103.6 159 43.4
Hund22205 Selenicereus undatus HOM05D002708 ORTHO05D003516 2.3e-20 103.6 158 43.7
Thecc.02G010700 Theobroma cacao HOM05D002708 ORTHO05D003516 2.3e-20 103.6 159 44.0
ECA248G0935 Erigeron canadensis HOM05D002708 ORTHO05D003516 3.0e-20 103.2 158 43.7
CiPaw.08G004600 Carya illinoinensis HOM05D002708 ORTHO05D003516 4.0e-20 102.8 159 44.0
CsaV3_7G024030 Cucumis sativus L. HOM05D002708 ORTHO05D003516 4.0e-20 102.8 159 43.4
AagrBONN_evm.TU.Sc2ySwM_117.472 Anthoceros agrestis HOM05D002708 ORTHO05D003516 5.2e-20 102.4 158 41.1
Cfa002667 Carpinus fangiana HOM05D002708 ORTHO05D003516 5.2e-20 102.4 159 42.8
ClCG09G010530 Citrullus lanatus HOM05D002708 ORTHO05D003516 5.2e-20 102.4 159 43.4
DCAR_029539 Daucus carota HOM05D002708 ORTHO05D003516 5.2e-20 102.4 159 42.8
Gohir.D02G238500 Gossypium hirsutum HOM05D002708 ORTHO05D003516 5.2e-20 102.4 158 42.4
Gohir.D12G045200 Gossypium hirsutum HOM05D002708 ORTHO05D003516 5.2e-20 102.4 159 43.4
Gorai.005G267000 Gossypium raimondii HOM05D002708 ORTHO05D003516 5.2e-20 102.4 158 42.4
Gorai.008G047600 Gossypium raimondii HOM05D002708 ORTHO05D003516 5.2e-20 102.4 159 43.4
TPR.G21430 Trifolium pratense HOM05D002708 ORTHO05D003516 5.2e-20 102.4 160 41.9
TWI63G0006 Tripterygium wilfordii HOM05D002708 ORTHO05D003516 5.2e-20 102.4 159 44.0
Cfa017363 Carpinus fangiana HOM05D002708 ORTHO05D003516 6.8e-20 102.1 159 42.1
CsaV3_7G021200 Cucumis sativus L. HOM05D002708 ORTHO05D003516 6.8e-20 102.1 159 43.4
Manes.03G006600 Manihot esculenta HOM05D002708 ORTHO05D003516 6.8e-20 102.1 159 42.8
Peaxi162Scf01124g00013 Petunia axillaris HOM05D002708 ORTHO05D003516 6.8e-20 102.1 158 43.0
Potri.018G015200 Populus trichocarpa HOM05D002708 ORTHO05D003516 6.8e-20 102.1 159 43.4
Sc20g0000810 Simmondsia chinensis HOM05D002708 ORTHO05D003516 6.8e-20 102.1 158 42.4
ECA248G3827 Erigeron canadensis HOM05D002708 ORTHO05D003516 8.9e-20 101.7 159 41.5
Phvul.009G084000 Phaseolus vulgaris HOM05D002708 ORTHO05D003516 8.9e-20 101.7 159 43.4
TWI32G0606 Tripterygium wilfordii HOM05D002708 ORTHO05D003516 8.9e-20 101.7 159 43.4
unitig_0.g1581 Utricularia gibba HOM05D002708 ORTHO05D003516 8.9e-20 101.7 157 42.0
ATR0794G148 Amborella trichopoda HOM05D002708 ORTHO05D003516 1.2e-19 101.3 159 41.5
ClCG09G010490 Citrullus lanatus HOM05D002708 ORTHO05D003516 1.2e-19 101.3 159 43.4
FAN02G3944 Fragaria x ananassa HOM05D002708 ORTHO05D003516 1.2e-19 101.3 157 42.0
FAN05G3540 Fragaria x ananassa HOM05D002708 ORTHO05D003516 1.2e-19 101.3 157 42.0
Nitab4.5_0001476g0150 Nicotiana tabacum HOM05D002708 ORTHO05D003516 1.2e-19 101.3 158 42.4
Actinidia33292 Actinidia chinensis HOM05D002708 ORTHO05D003516 1.5e-19 100.9 158 41.8
Gohir.A03G216900 Gossypium hirsutum HOM05D002708 ORTHO05D003516 1.5e-19 100.9 158 41.8
MD12G1258100 Malus domestica HOM05D002708 ORTHO05D003516 1.5e-19 100.9 157 41.4
Nitab4.5_0012432g0010 Nicotiana tabacum HOM05D002708 ORTHO05D003516 1.5e-19 100.9 158 42.4
RcHm_v2.0_Chr3g0448281 Rosa chinensis HOM05D002708 ORTHO05D003516 1.5e-19 100.9 160 41.2
Sabra06G0209700 Salix brachista HOM05D002708 ORTHO05D003516 1.5e-19 100.9 159 42.1
Medtr3g105430 Medicago truncatula HOM05D002708 ORTHO05D003516 2.0e-19 100.5 159 44.0
EL10Ac4g08928 Beta vulgaris HOM05D002708 ORTHO05D003516 2.6e-19 100.1 156 39.7
CDE01G0349 Ceratophyllum demersum HOM05D002708 ORTHO05D003516 2.6e-19 100.1 157 41.4
FAN09G1379 Fragaria x ananassa HOM05D002708 ORTHO05D003516 2.6e-19 100.1 157 41.4
Sabra18G0018700 Salix brachista HOM05D002708 ORTHO05D003516 2.6e-19 100.1 158 41.8
SEGI_28578 Sequoiadendron giganteum HOM05D002708 ORTHO05D003516 2.6e-19 100.1 159 38.4
AUR62004771 Chenopodium quinoa HOM05D002708 ORTHO05D003516 3.4e-19 99.8 157 40.8
AUR62037481 Chenopodium quinoa HOM05D002708 ORTHO05D003516 3.4e-19 99.8 157 40.8
HanXRQChr11g0341881 Helianthus annuus HOM05D002708 ORTHO05D003516 3.4e-19 99.8 158 42.4
Psat5g034880 Pisum sativum HOM05D002708 ORTHO05D003516 3.4e-19 99.8 158 43.7
ATR0693G135 Amborella trichopoda HOM05D002708 ORTHO05D003516 4.4e-19 99.4 159 40.9
vmacro21095 Vaccinium macrocarpon HOM05D002708 ORTHO05D003516 4.4e-19 99.4 158 43.0
Migut.B01470 Erythranthe guttata HOM05D002708 ORTHO05D003516 5.8e-19 99.0 158 41.8
FvH4_6g00800 Fragaria vesca HOM05D002708 ORTHO05D003516 5.8e-19 99.0 157 41.4
FAN14G3709 Fragaria x ananassa HOM05D002708 ORTHO05D003516 5.8e-19 99.0 157 41.4
HanXRQChr11g0352181 Helianthus annuus HOM05D002708 ORTHO05D003516 5.8e-19 99.0 158 41.8
PSO017G2439 Papaver somniferum HOM05D002708 ORTHO05D003516 5.8e-19 99.0 158 41.8
PSO063G5514 Papaver somniferum HOM05D002708 ORTHO05D003516 5.8e-19 99.0 158 41.8
PSO782G1674 Papaver somniferum HOM05D002708 ORTHO05D003516 5.8e-19 99.0 158 41.8
CDE12G0538 Ceratophyllum demersum HOM05D002708 ORTHO05D003516 7.5e-19 98.6 157 40.8
Lsat_1_v5_gn_7_11740 Lactuca sativa HOM05D002708 ORTHO05D003516 7.5e-19 98.6 159 41.5
Prupe.6G358600 Prunus persica HOM05D002708 ORTHO05D003516 7.5e-19 98.6 157 40.8
Rhsim01G0145200 Rhododendron simsii HOM05D002708 ORTHO05D003516 1.3e-18 97.8 158 42.4
Hma1.2p1_0021F.1_g014376 Hydrangea macrophylla HOM05D002708 ORTHO05D003516 1.7e-18 97.4 158 41.1
Lsat_1_v5_gn_1_83221 Lactuca sativa HOM05D002708 ORTHO05D003516 1.7e-18 97.4 158 41.8
MBI19_g28098_MAGBIO Magnolia biondii HOM05D002708 ORTHO05D003516 2.2e-18 97.1 158 42.4
Mapoly0108s0028 Marchantia polymorpha HOM05D002708 ORTHO05D003516 2.2e-18 97.1 158 40.5
Oeu037396.1 Olea europaea HOM05D002708 ORTHO05D003516 2.2e-18 97.1 158 42.4
SEGI_02227 Sequoiadendron giganteum HOM05D002708 ORTHO05D003516 2.2e-18 97.1 159 37.7
Dinv44002 Davidia involucrata HOM05D002708 ORTHO05D003516 2.9e-18 96.7 158 41.1
CSS0041941 Camellia sinensis var. sinensis HOM05D002708 ORTHO05D003516 3.7e-18 96.3 157 41.4
MSTRG.20407 Avicennia marina HOM05D002708 ORTHO05D003516 4.9e-18 95.9 158 40.5
EL10Ac5g11414 Beta vulgaris HOM05D002708 ORTHO05D003516 4.9e-18 95.9 156 37.8
CAN.G1480.4 Capsicum annuum HOM05D002708 ORTHO05D003516 4.9e-18 95.9 156 38.5
Pp3c11_25960 Physcomitrium patens HOM05D002708 ORTHO05D003516 4.9e-18 95.9 158 40.5
PGR031G2892 Punica granatum HOM05D002708 ORTHO05D003516 6.4e-18 95.5 158 41.1
Duzib052G0664 Durio zibethinus HOM05D002708 ORTHO05D003516 8.3e-18 95.1 159 41.5
SGA_v2.0_scaffold85G26804 Striga asiatica HOM05D002708 ORTHO05D003516 8.3e-18 95.1 157 40.1
Zm00001eb024200 Zea mays HOM05D002708 ORTHO05D003516 8.3e-18 95.1 158 38.6
Aqoxy7G03410 Aquilegia oxysepala HOM05D002708 ORTHO05D003516 1.1e-17 94.7 159 41.5
Cc00_g16980 Coffea canephora HOM05D002708 ORTHO05D003516 1.4e-17 94.4 158 40.5
CANSAT25G3904 Cannabis sativa HOM05D002708 ORTHO05D003516 1.8e-17 94.0 150 42.7
Nn3g18494 Nelumbo nucifera HOM05D002708 ORTHO05D003516 4.1e-17 92.8 158 40.5
MELO3C013234.2 Cucumis melo HOM05D002708 ORTHO05D003516 7.0e-17 92.0 152 42.8
QL08p065006 Quercus lobata HOM05D002708 ORTHO05D003516 9.2e-17 91.7 154 40.9
Pp3c7_370 Physcomitrium patens HOM05D002708 ORTHO05D003516 1.2e-16 91.3 158 39.2
Cpa.g.sc17.146 Carica papaya HOM05D002708 ORTHO05D003516 2.0e-16 90.5 167 40.1
Thhalv10027018m.g Eutrema salsugineum HOM05D002708 ORTHO05D003516 2.0e-16 90.5 162 40.7
CSS0024835 Camellia sinensis var. sinensis HOM05D002708 ORTHO05D003516 1.0e-15 88.2 158 36.7
CSS0039264 Camellia sinensis var. sinensis HOM05D002708 ORTHO05D003516 1.0e-15 88.2 158 36.7
CSS0029201 Camellia sinensis var. sinensis HOM05D002708 ORTHO05D003516 1.3e-15 87.8 156 36.5
COL.COLO4_30887 Corchorus olitorius HOM05D002708 ORTHO05D003516 1.3e-15 87.8 158 38.0
Sed0010327 Sechium edule HOM05D002708 ORTHO05D003516 1.3e-15 87.8 157 40.1
BcaNung04121 Brassica carinata HOM05D002708 ORTHO05D003516 1.7e-15 87.4 161 41.0
HanXRQChr03g0088081 Helianthus annuus HOM05D002708 ORTHO05D003516 1.7e-15 87.4 157 37.6
HPP92_028477 Vanilla planifolia HOM05D002708 ORTHO05D003516 3.0e-15 86.7 158 36.1
Aa31LG2G18580 Aethionema arabicum HOM05D002708 ORTHO05D003516 3.9e-15 86.3 161 38.5
SEGI_26246 Sequoiadendron giganteum HOM05D002708 ORTHO05D003516 6.6e-15 85.5 152 36.8
TPR.G27979 Trifolium pratense HOM05D002708 ORTHO05D003516 1.1e-14 84.7 157 38.9
Haze_20811 Corylus avellana HOM05D002708 ORTHO05D003516 4.7e-13 79.3 94 46.8
Haze_24936 Corylus avellana HOM05D002708 ORTHO05D003516 4.7e-13 79.3 94 47.9
Atru.chr3.3419 Acer truncatum HOM05D002708 ORTHO05D003516 2.3e-12 77.0 132 41.7
Dinv43572 Davidia involucrata HOM05D002708 ORTHO05D003516 4.0e-12 76.3 93 46.2
unitig_0.g1327 Utricularia gibba HOM05D002708 ORTHO05D003516 5.2e-12 75.9 93 46.2
SMO270G0119 Selaginella moellendorffii HOM05D002708 ORTHO05D003516 6.8e-12 75.5 156 32.7
Lj9A548G53 Lonicera japonica HOM05D002708 ORTHO05D003516 2.6e-11 73.6 94 44.7
Actinidia21606 Actinidia chinensis HOM05D002708 ORTHO05D003516 5.8e-11 72.4 140 37.9
SGA_v2.0_scaffold578G53025 Striga asiatica HOM05D002708 ORTHO05D003516 7.5e-11 72.0 92 42.4
arahy.Tifrunner.gnm1.ann1.CBM3F9 Arachis hypogaea HOM05D002708 ORTHO05D003516 9.8e-11 71.6 107 41.1
Lsat_1_v5_gn_8_82921 Lactuca sativa HOM05D002708 ORTHO05D003516 2.2e-10 70.5 156 31.4
Ca_15806_v3 Cicer arietinum L. HOM05D002708 ORTHO05D003516 3.2e-09 66.6 166 36.1
CBR_g32387 Chara braunii HOM05D002708 ORTHO05D003516 4.1e-09 66.2 157 30.6
AL1G59060 Arabidopsis lyrata HOM05D002708 ORTHO05D003516 9.2e-09 65.1 71 53.5
arahy.Tifrunner.gnm1.ann1.113R7L Arachis hypogaea HOM05D002708 ORTHO05D018503 9.2e-09 65.1 90 44.4
Glyma.04G057632 Glycine max HOM05D002708 ORTHO05D003516 1.0e-07 61.6 158 33.5
Nitab4.5_0015087g0010 Nicotiana tabacum HOM05D002708 ORTHO05D003516 6.6e-07 58.9 58 48.3
Sp4g04890 Schrenkiella parvula HOM05D000074 ORTHO05D000220 7.3e-06 55.5 43 55.8
AL6G38780 Arabidopsis lyrata HOM05D002708 ORTHO05D003516 9.5e-06 55.1 38 65.8
Thhalv10000022m.g Eutrema salsugineum HOM05D000074 ORTHO05D000220 9.5e-06 55.1 43 55.8


User provided reference genes

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