Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G40090 Arabidopsis lyrata HOM05D007946 ORTHO05D004325 3.8e-141 505.0 282 100.0
AL6G38960 Arabidopsis lyrata HOM05D007946 ORTHO05D004325 4.1e-119 431.8 289 88.9
AL6G40080 Arabidopsis lyrata HOM05D007946 ORTHO05D004325 2.1e-115 419.5 273 91.2
AL6G38970 Arabidopsis lyrata HOM05D007946 ORTHO05D004325 5.7e-113 411.4 274 90.1
AT5G27070 Arabidopsis thaliana HOM05D007946 ORTHO05D004325 8.5e-109 397.5 288 82.6
AT5G26950 Arabidopsis thaliana HOM05D007946 ORTHO05D004325 7.4e-105 384.4 291 81.1
AT5G27580 Arabidopsis thaliana HOM05D007946 ORTHO05D004325 4.1e-87 325.5 221 87.8
Carub.0006s2523 Capsella rubella HOM05D007946 ORTHO05D004325 3.0e-82 309.3 294 70.1
AT5G27944 Arabidopsis thaliana HOM05D007946 ORTHO05D004325 1.2e-81 307.4 222 85.1
Carub.0006s2465 Capsella rubella HOM05D007946 ORTHO05D004325 1.1e-79 300.8 297 68.0
AT5G27090 Arabidopsis thaliana HOM05D007946 ORTHO05D004325 8.9e-58 228.0 191 81.7
Thhalv10005452m.g Eutrema salsugineum HOM05D007946 ORTHO05D004325 8.6e-53 211.5 324 47.2
Thhalv10005435m.g Eutrema salsugineum HOM05D007946 ORTHO05D004325 2.7e-46 189.9 343 42.3
AT5G26865 Arabidopsis thaliana HOM05D007946 ORTHO05D004325 1.1e-42 177.9 115 83.5
AT5G27050 Arabidopsis thaliana HOM05D007946 ORTHO05D004325 3.1e-42 176.4 111 85.6
Thhalv10002808m.g Eutrema salsugineum HOM05D007946 ORTHO05D004325 2.6e-41 173.3 246 48.4
Sp1g35160 Schrenkiella parvula HOM05D007946 ORTHO05D004325 5.6e-36 155.6 313 46.3
Sp5g22080 Schrenkiella parvula HOM05D007946 ORTHO05D004325 7.3e-36 155.2 323 43.7
C08p30320 Brassica napus HOM05D007946 ORTHO05D004325 7.6e-33 145.2 226 43.4
A09p48100 Brassica napus HOM05D007946 ORTHO05D004325 1.2e-30 137.9 268 38.8
BolC8t50656H Brassica oleracea HOM05D007946 ORTHO05D004325 2.7e-30 136.7 278 39.9
C08p30340 Brassica napus HOM05D007946 ORTHO05D004325 4.6e-30 136.0 273 39.6
BraA09t38796Z Brassica rapa HOM05D007946 ORTHO05D004325 1.7e-29 134.0 278 39.6
A09p32540 Brassica napus HOM05D007946 ORTHO05D004325 3.0e-29 133.3 278 39.2
CARHR186690 Cardamine hirsuta HOM05D007946 ORTHO05D004325 6.6e-29 132.1 145 54.5
CARHR186490 Cardamine hirsuta HOM05D007946 ORTHO05D004325 1.5e-28 131.0 145 55.2
A08p14850 Brassica napus HOM05D007946 ORTHO05D004325 1.9e-28 130.6 257 39.7
A07p06920 Brassica napus HOM05D007946 ORTHO05D004325 3.3e-28 129.8 276 38.0
BraA07t28483Z Brassica rapa HOM05D007946 ORTHO05D004325 3.3e-28 129.8 276 38.0
BolC6t35452H Brassica oleracea HOM05D007946 ORTHO05D004325 2.1e-27 127.1 251 37.5
BcaB01g00130 Brassica carinata HOM05D007946 ORTHO05D004325 4.8e-27 125.9 252 39.3
C06p03210 Brassica napus HOM05D007946 ORTHO05D004325 6.2e-27 125.6 274 37.2
BolC6t35453H Brassica oleracea HOM05D007946 ORTHO05D004325 1.4e-26 124.4 274 36.9
BcaC08g43062 Brassica carinata HOM05D007946 ORTHO05D004325 1.8e-26 124.0 267 36.3
BraA06t23637Z Brassica rapa HOM05D007946 ORTHO05D004325 3.1e-26 123.2 269 36.8
BcaNung06274 Brassica carinata HOM05D007946 ORTHO05D004325 4.0e-26 122.9 250 37.2
A06p04330 Brassica napus HOM05D007946 ORTHO05D004325 5.3e-26 122.5 264 36.4
BcaB03g15376 Brassica carinata HOM05D007946 ORTHO05D004325 4.5e-25 119.4 289 35.3
BcaC08g46035 Brassica carinata HOM05D007946 ORTHO05D004325 4.5e-25 119.4 299 36.1
A07p32380 Brassica napus HOM05D007946 ORTHO05D004325 4.5e-25 119.4 259 36.3
BraA07t30861Z Brassica rapa HOM05D007946 ORTHO05D004325 4.5e-25 119.4 259 36.3
A06p04090 Brassica napus HOM05D007946 ORTHO05D004325 9.9e-25 118.2 276 36.6
BcaB07g33730 Brassica carinata HOM05D007946 ORTHO05D004325 3.2e-23 113.2 278 37.1
BcaB07g33784 Brassica carinata HOM05D007946 ORTHO05D004325 3.2e-23 113.2 278 37.1
C06p03120 Brassica napus HOM05D007946 ORTHO05D004325 7.1e-23 112.1 215 40.0
BolC6t35430H Brassica oleracea HOM05D007946 ORTHO05D004325 7.1e-23 112.1 215 40.0
BcaNung06357 Brassica carinata HOM05D007946 ORTHO05D004325 1.3e-21 107.8 225 37.8
BolC6t35593H Brassica oleracea HOM05D007946 ORTHO05D004325 1.3e-21 107.8 225 37.8
BcaC08g43051 Brassica carinata HOM05D007946 ORTHO05D004325 1.8e-21 107.5 225 38.2
Thhalv10028184m.g Eutrema salsugineum HOM05D006887 ORTHO05D004325 2.3e-21 107.1 197 36.0
BcaC07g39831 Brassica carinata HOM05D007946 ORTHO05D004325 3.0e-21 106.7 266 36.1
Thhalv10028282m.g Eutrema salsugineum HOM05D006887 ORTHO05D004325 1.5e-20 104.4 200 37.5
BcaB04g17058 Brassica carinata HOM05D007946 ORTHO05D004325 1.9e-20 104.0 203 38.9
BraA09t38795Z Brassica rapa HOM05D007946 ORTHO05D004325 5.6e-20 102.4 265 35.1
BraA09t40264Z Brassica rapa HOM05D007946 ORTHO05D004325 1.6e-19 100.9 266 34.6
BraA08t33469Z Brassica rapa HOM05D007946 ORTHO05D004325 2.1e-19 100.5 164 42.7
BcaB04g17499 Brassica carinata HOM05D007946 ORTHO05D004325 2.8e-19 100.1 277 34.3
AT5G41200 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 2.4e-18 97.1 189 40.2
BcaC07g39832 Brassica carinata HOM05D007946 ORTHO05D004325 3.1e-18 96.7 278 35.6
A09p32530 Brassica napus HOM05D007946 ORTHO05D004325 3.1e-18 96.7 265 34.0
BcaB07g33736 Brassica carinata HOM05D007946 ORTHO05D004325 1.5e-17 94.4 146 46.6
AT5G38740 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 3.4e-17 93.2 200 42.5
AT5G39810 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 5.8e-17 92.4 228 36.8
Sp3g16720 Schrenkiella parvula HOM05D006887 ORTHO05D004325 5.8e-17 92.4 235 33.6
AT5G39750 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 2.2e-16 90.5 201 37.3
AT5G40220 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 2.2e-16 90.5 236 36.9
BcaC05g28586 Brassica carinata HOM05D006887 ORTHO05D004325 2.2e-16 90.5 229 36.7
BolC5t33421H Brassica oleracea HOM05D006887 ORTHO05D004325 2.2e-16 90.5 229 36.7
Carub.0007s3561 Capsella rubella HOM05D006887 ORTHO05D004325 2.2e-16 90.5 237 34.2
AL7G50550 Arabidopsis lyrata HOM05D006887 ORTHO05D004325 3.8e-16 89.7 231 36.8
AL7G50480 Arabidopsis lyrata HOM05D006887 ORTHO05D004325 1.4e-15 87.8 185 36.8
C06p03600 Brassica napus HOM05D007946 ORTHO05D004325 1.9e-15 87.4 124 40.3
BolC6t35438H Brassica oleracea HOM05D007946 ORTHO05D004325 1.9e-15 87.4 147 40.1
BraA05t21939Z Brassica rapa HOM05D006887 ORTHO05D004325 1.9e-15 87.4 229 34.9
Thhalv10027361m.g Eutrema salsugineum HOM05D007946 ORTHO05D004325 1.9e-15 87.4 118 53.4
AT5G40120 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 2.5e-15 87.0 234 36.8
AL7G49930 Arabidopsis lyrata HOM05D006887 ORTHO05D004325 4.2e-15 86.3 233 34.3
BcaB01g00129 Brassica carinata HOM05D007946 ORTHO05D004325 5.5e-15 85.9 232 37.1
Sp1g35560 Schrenkiella parvula HOM05D007946 ORTHO05D004325 2.7e-14 83.6 220 39.5
CARHR094030 Cardamine hirsuta HOM05D006887 ORTHO05D004325 3.5e-14 83.2 247 32.4
BcaB04g18996 Brassica carinata HOM05D006887 ORTHO05D004325 7.9e-14 82.0 225 32.0
AL3G31960 Arabidopsis lyrata HOM05D006887 ORTHO05D004325 1.0e-13 81.6 201 33.8
AT3G18650 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 2.3e-13 80.5 237 31.6
Carub.0007s3559 Capsella rubella HOM05D006887 ORTHO05D004325 2.3e-13 80.5 191 33.5
BcaB04g20759 Brassica carinata HOM05D006887 ORTHO05D004325 3.9e-13 79.7 125 43.2
BcaNung05019 Brassica carinata HOM05D007946 ORTHO05D004325 5.1e-13 79.3 181 34.8
BolC8t50655H Brassica oleracea HOM05D007946 ORTHO05D004325 8.7e-13 78.6 215 35.8
BraA04t16961Z Brassica rapa HOM05D006887 ORTHO05D004325 8.7e-13 78.6 82 54.9
Thhalv10005313m.g Eutrema salsugineum HOM05D006887 ORTHO05D004325 8.7e-13 78.6 192 33.3
A04p12860 Brassica napus HOM05D006887 ORTHO05D004325 1.5e-12 77.8 69 59.4
BraA04t16949Z Brassica rapa HOM05D006887 ORTHO05D004325 1.5e-12 77.8 69 59.4
BraA04t16959Z Brassica rapa HOM05D006887 ORTHO05D004325 1.5e-12 77.8 62 64.5
Carub.0003s3325 Capsella rubella HOM05D006887 ORTHO05D004325 1.9e-12 77.4 229 32.3
Thhalv10019780m.g Eutrema salsugineum HOM05D007946 ORTHO05D004325 1.9e-12 77.4 172 34.3
BcaC08g43096 Brassica carinata HOM05D007946 ORTHO05D004325 2.5e-12 77.0 179 34.6
BcaB06g25916 Brassica carinata HOM05D006887 ORTHO05D004325 3.3e-12 76.6 224 33.5
Carub.0003s1843 Capsella rubella HOM05D006887 ORTHO05D004325 3.3e-12 76.6 233 33.5
AL8G42910 Arabidopsis lyrata HOM05D006887 ORTHO05D004325 5.7e-12 75.9 231 32.5
A04p13000 Brassica napus HOM05D006887 ORTHO05D004325 5.7e-12 75.9 62 61.3
BcaB08g34810 Brassica carinata HOM05D006887 ORTHO05D004325 7.4e-12 75.5 62 61.3
BcaB06g27442 Brassica carinata HOM05D006887 ORTHO05D004325 9.6e-12 75.1 62 61.3
C06p38290 Brassica napus HOM05D007946 ORTHO05D004325 9.6e-12 75.1 107 43.0
BolC6t38928H Brassica oleracea HOM05D007946 ORTHO05D004325 9.6e-12 75.1 107 43.0
BcaB06g27440 Brassica carinata HOM05D006887 ORTHO05D004325 2.1e-11 73.9 56 64.3
THA.LOC104804829 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 4.8e-11 72.8 106 46.2
A04p12980 Brassica napus HOM05D006887 ORTHO05D004325 6.3e-11 72.4 240 30.0
THA.LOC109116041 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 6.3e-11 72.4 106 46.2
AT5G65330 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 1.1e-10 71.6 238 31.5
THA.LOC109116042 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 1.1e-10 71.6 106 46.2
BcaB06g27394 Brassica carinata HOM05D006887 ORTHO05D004325 1.4e-10 71.2 80 50.0
Carub.0007s3594 Capsella rubella HOM05D006887 ORTHO05D004325 1.4e-10 71.2 240 29.2
BcaB06g27671 Brassica carinata HOM05D006887 ORTHO05D004325 1.8e-10 70.9 82 48.8
BolC4t26260H Brassica oleracea HOM05D006887 ORTHO05D004325 1.8e-10 70.9 62 59.7
BcaB06g27414 Brassica carinata HOM05D006887 ORTHO05D004325 2.4e-10 70.5 62 58.1
C04p46670 Brassica napus HOM05D006887 ORTHO05D004325 6.9e-10 68.9 62 56.5
C04p46750 Brassica napus HOM05D006887 ORTHO05D004325 9.0e-10 68.6 190 31.6
BolC4t26262H Brassica oleracea HOM05D006887 ORTHO05D004325 9.0e-10 68.6 190 31.6
C04p46390 Brassica napus HOM05D006887 ORTHO05D004325 1.5e-09 67.8 62 56.5
Sp1g35140 Schrenkiella parvula HOM05D007946 ORTHO05D004325 1.5e-09 67.8 199 37.2
CARHR262050 Cardamine hirsuta HOM05D006887 ORTHO05D004325 2.0e-09 67.4 50 62.0
BcaC01g03686 Brassica carinata HOM05D006887 ORTHO05D004325 2.6e-09 67.0 206 30.1
C03p49630 Brassica napus HOM05D006887 ORTHO05D004325 2.6e-09 67.0 206 30.1
A02p43880 Brassica napus HOM05D006887 ORTHO05D004325 3.4e-09 66.6 206 33.0
BraA02t09311Z Brassica rapa HOM05D006887 ORTHO05D004325 3.4e-09 66.6 206 33.0
AT4G02235 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 7.6e-09 65.5 160 35.0
Thhalv10022126m.g Eutrema salsugineum HOM05D006887 ORTHO05D004325 7.6e-09 65.5 234 38.0
THA.LOC104801507 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 7.6e-09 65.5 120 36.7
BolC4t26255H Brassica oleracea HOM05D006887 ORTHO05D004325 1.3e-08 64.7 237 28.3
Sp2g28440 Schrenkiella parvula HOM05D006887 ORTHO05D004325 1.3e-08 64.7 204 30.4
BcaC09g48822 Brassica carinata HOM05D006887 ORTHO05D004325 1.7e-08 64.3 118 40.7
C01p45590 Brassica napus HOM05D006887 ORTHO05D004325 1.7e-08 64.3 118 40.7
BolC1t04520H Brassica oleracea HOM05D006887 ORTHO05D004325 1.7e-08 64.3 118 40.7
AT4G11250 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 2.2e-08 63.9 247 30.4
C02p64040 Brassica napus HOM05D006887 ORTHO05D004325 2.2e-08 63.9 211 31.3
BolC2t12470H Brassica oleracea HOM05D006887 ORTHO05D004325 2.2e-08 63.9 211 31.3
CARHR157630 Cardamine hirsuta HOM05D006887 ORTHO05D004325 2.9e-08 63.5 248 35.9
Aa31LG8G6660 Aethionema arabicum HOM05D006887 ORTHO05D004325 3.8e-08 63.2 135 37.8
BcaC03g18328 Brassica carinata HOM05D006887 ORTHO05D004325 3.8e-08 63.2 211 31.3
Carub.0008s2621 Capsella rubella HOM05D006887 ORTHO05D004325 8.4e-08 62.0 41 68.3
AT5G37415 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 1.1e-07 61.6 165 32.7
BcaB06g27392 Brassica carinata HOM05D008478 ORTHO05D000740 1.9e-07 60.8 170 31.8
THA.LOC104810872 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 2.5e-07 60.5 318 27.0
Aa31LG8G6650 Aethionema arabicum HOM05D006887 ORTHO05D004325 3.2e-07 60.1 89 46.1
BcaB06g27670 Brassica carinata HOM05D006887 ORTHO05D004325 3.2e-07 60.1 69 46.4
Manes.10G129900 Manihot esculenta HOM05D006887 ORTHO05D004325 5.5e-07 59.3 93 39.8
THA.LOC104805962 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 5.5e-07 59.3 183 30.6
A01p35810 Brassica napus HOM05D006887 ORTHO05D004325 7.2e-07 58.9 131 38.2
CARHR058360 Cardamine hirsuta HOM05D006887 ORTHO05D004325 7.2e-07 58.9 172 32.6
BraA01t03660Z Brassica rapa HOM05D006887 ORTHO05D004325 9.3e-07 58.5 131 38.2
CARHR283740 Cardamine hirsuta HOM05D006887 ORTHO05D004325 9.3e-07 58.5 196 29.6


User provided reference genes

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