Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G38970 Arabidopsis lyrata HOM05D007946 ORTHO05D004325 1.2e-136 490.0 273 100.0
AL6G38960 Arabidopsis lyrata HOM05D007946 ORTHO05D004325 2.0e-118 429.5 276 89.5
AL6G40090 Arabidopsis lyrata HOM05D007946 ORTHO05D004325 2.9e-114 415.6 274 90.1
AL6G40080 Arabidopsis lyrata HOM05D007946 ORTHO05D004325 5.1e-111 404.8 276 88.8
AT5G26950 Arabidopsis thaliana HOM05D007946 ORTHO05D004325 4.4e-102 375.2 279 81.7
AT5G27070 Arabidopsis thaliana HOM05D007946 ORTHO05D004325 7.0e-100 367.9 280 81.4
AT5G27580 Arabidopsis thaliana HOM05D007946 ORTHO05D004325 2.3e-87 326.2 221 87.3
AT5G27944 Arabidopsis thaliana HOM05D007946 ORTHO05D004325 6.6e-82 308.1 222 84.7
Carub.0006s2523 Capsella rubella HOM05D007946 ORTHO05D004325 9.5e-81 304.3 284 70.4
Carub.0006s2465 Capsella rubella HOM05D007946 ORTHO05D004325 3.0e-79 299.3 283 68.2
AT5G27090 Arabidopsis thaliana HOM05D007946 ORTHO05D004325 1.5e-57 227.3 185 80.0
Thhalv10005452m.g Eutrema salsugineum HOM05D007946 ORTHO05D004325 7.1e-52 208.4 322 47.2
Thhalv10005435m.g Eutrema salsugineum HOM05D007946 ORTHO05D004325 1.3e-45 187.6 341 41.3
AT5G26865 Arabidopsis thaliana HOM05D007946 ORTHO05D004325 3.0e-42 176.4 115 82.6
AT5G27050 Arabidopsis thaliana HOM05D007946 ORTHO05D004325 8.7e-42 174.9 111 84.7
Thhalv10002808m.g Eutrema salsugineum HOM05D007946 ORTHO05D004325 1.1e-39 167.9 243 45.7
Sp1g35160 Schrenkiella parvula HOM05D007946 ORTHO05D004325 5.4e-36 155.6 316 45.6
Sp5g22080 Schrenkiella parvula HOM05D007946 ORTHO05D004325 1.2e-35 154.5 306 43.8
CARHR186690 Cardamine hirsuta HOM05D007946 ORTHO05D004325 5.3e-31 139.0 145 55.2
CARHR186490 Cardamine hirsuta HOM05D007946 ORTHO05D004325 1.2e-30 137.9 145 55.9
C08p30320 Brassica napus HOM05D007946 ORTHO05D004325 4.5e-30 136.0 235 41.7
A09p48100 Brassica napus HOM05D007946 ORTHO05D004325 7.6e-30 135.2 276 38.0
C08p30340 Brassica napus HOM05D007946 ORTHO05D004325 7.6e-30 135.2 255 41.2
BolC8t50656H Brassica oleracea HOM05D007946 ORTHO05D004325 2.2e-29 133.7 260 40.8
BraA09t38796Z Brassica rapa HOM05D007946 ORTHO05D004325 2.2e-29 133.7 260 41.2
A09p32540 Brassica napus HOM05D007946 ORTHO05D004325 3.8e-29 132.9 260 40.8
A08p14850 Brassica napus HOM05D007946 ORTHO05D004325 8.4e-29 131.7 274 38.7
BcaB03g15376 Brassica carinata HOM05D007946 ORTHO05D004325 3.2e-28 129.8 290 35.9
BcaB01g00130 Brassica carinata HOM05D007946 ORTHO05D004325 1.0e-26 124.8 249 37.8
BcaC08g46035 Brassica carinata HOM05D007946 ORTHO05D004325 1.3e-26 124.4 289 34.3
A07p06920 Brassica napus HOM05D007946 ORTHO05D004325 5.1e-26 122.5 296 35.1
BraA07t28483Z Brassica rapa HOM05D007946 ORTHO05D004325 5.1e-26 122.5 296 35.1
BolC6t35452H Brassica oleracea HOM05D007946 ORTHO05D004325 8.7e-26 121.7 246 37.4
BcaNung06274 Brassica carinata HOM05D007946 ORTHO05D004325 1.5e-25 120.9 246 35.0
C06p03210 Brassica napus HOM05D007946 ORTHO05D004325 4.3e-25 119.4 270 35.9
A07p32380 Brassica napus HOM05D007946 ORTHO05D004325 5.6e-25 119.0 297 34.7
BraA07t30861Z Brassica rapa HOM05D007946 ORTHO05D004325 5.6e-25 119.0 297 34.7
A06p04330 Brassica napus HOM05D007946 ORTHO05D004325 7.4e-25 118.6 261 35.6
BolC6t35453H Brassica oleracea HOM05D007946 ORTHO05D004325 9.6e-25 118.2 270 35.6
BcaC08g43062 Brassica carinata HOM05D007946 ORTHO05D004325 1.3e-24 117.9 263 35.0
BraA06t23637Z Brassica rapa HOM05D007946 ORTHO05D004325 2.8e-24 116.7 265 35.5
C06p03120 Brassica napus HOM05D007946 ORTHO05D004325 8.1e-24 115.2 251 35.5
BolC6t35430H Brassica oleracea HOM05D007946 ORTHO05D004325 8.1e-24 115.2 251 35.5
BcaNung06357 Brassica carinata HOM05D007946 ORTHO05D004325 4.0e-23 112.8 228 37.7
BolC6t35593H Brassica oleracea HOM05D007946 ORTHO05D004325 4.0e-23 112.8 228 37.7
A06p04090 Brassica napus HOM05D007946 ORTHO05D004325 6.9e-23 112.1 293 33.8
BcaB07g33730 Brassica carinata HOM05D007946 ORTHO05D004325 2.6e-22 110.2 278 33.8
BcaB07g33784 Brassica carinata HOM05D007946 ORTHO05D004325 2.6e-22 110.2 278 33.8
BcaC08g43051 Brassica carinata HOM05D007946 ORTHO05D004325 2.6e-22 110.2 261 36.0
Thhalv10028184m.g Eutrema salsugineum HOM05D006887 ORTHO05D004325 7.6e-22 108.6 199 37.7
AT5G40220 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 8.4e-21 105.1 232 38.4
AT5G41200 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 8.4e-21 105.1 224 39.7
AT5G38740 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 1.1e-20 104.8 226 39.8
Thhalv10028282m.g Eutrema salsugineum HOM05D006887 ORTHO05D004325 1.1e-20 104.8 206 36.4
AL7G50550 Arabidopsis lyrata HOM05D006887 ORTHO05D004325 1.4e-20 104.4 236 37.7
BcaC07g39831 Brassica carinata HOM05D007946 ORTHO05D004325 7.1e-20 102.1 276 35.1
AT5G39810 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 9.3e-20 101.7 218 37.6
AT5G39750 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 2.7e-19 100.1 229 36.7
AL7G49930 Arabidopsis lyrata HOM05D006887 ORTHO05D004325 4.6e-19 99.4 236 36.4
Sp3g16720 Schrenkiella parvula HOM05D006887 ORTHO05D004325 4.6e-19 99.4 303 31.7
AT5G40120 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 6.0e-19 99.0 231 36.4
BcaB04g17058 Brassica carinata HOM05D007946 ORTHO05D004325 1.0e-18 98.2 225 35.1
BraA09t40264Z Brassica rapa HOM05D007946 ORTHO05D004325 1.0e-18 98.2 270 34.1
BraA09t38795Z Brassica rapa HOM05D007946 ORTHO05D004325 1.3e-18 97.8 275 34.2
BraA08t33469Z Brassica rapa HOM05D007946 ORTHO05D004325 2.3e-18 97.1 164 42.1
A09p32530 Brassica napus HOM05D007946 ORTHO05D004325 3.9e-18 96.3 262 34.0
BcaC07g39832 Brassica carinata HOM05D007946 ORTHO05D004325 6.7e-18 95.5 260 36.9
Carub.0007s3561 Capsella rubella HOM05D006887 ORTHO05D004325 1.1e-17 94.7 233 35.2
AL7G50480 Arabidopsis lyrata HOM05D006887 ORTHO05D004325 1.5e-17 94.4 217 35.5
BcaB04g17499 Brassica carinata HOM05D007946 ORTHO05D004325 1.5e-17 94.4 272 32.7
BcaB07g33736 Brassica carinata HOM05D007946 ORTHO05D004325 4.3e-17 92.8 146 46.6
BraA05t21939Z Brassica rapa HOM05D006887 ORTHO05D004325 2.1e-16 90.5 186 37.1
CARHR094030 Cardamine hirsuta HOM05D006887 ORTHO05D004325 4.8e-16 89.4 239 35.1
BcaC05g28586 Brassica carinata HOM05D006887 ORTHO05D004325 6.2e-16 89.0 248 33.5
BolC5t33421H Brassica oleracea HOM05D006887 ORTHO05D004325 6.2e-16 89.0 248 33.5
C06p03600 Brassica napus HOM05D007946 ORTHO05D004325 2.4e-15 87.0 124 40.3
BolC6t35438H Brassica oleracea HOM05D007946 ORTHO05D004325 6.9e-15 85.5 147 39.5
BcaNung05019 Brassica carinata HOM05D007946 ORTHO05D004325 1.5e-14 84.3 198 34.8
Carub.0007s3559 Capsella rubella HOM05D006887 ORTHO05D004325 3.4e-14 83.2 187 34.2
BcaB01g00129 Brassica carinata HOM05D007946 ORTHO05D004325 4.5e-14 82.8 244 35.2
Thhalv10027361m.g Eutrema salsugineum HOM05D007946 ORTHO05D004325 5.8e-14 82.4 120 47.5
AT3G18650 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 1.0e-13 81.6 236 31.8
BcaC08g43096 Brassica carinata HOM05D007946 ORTHO05D004325 1.0e-13 81.6 196 34.7
BcaB04g18996 Brassica carinata HOM05D006887 ORTHO05D004325 2.2e-13 80.5 229 32.3
Carub.0003s3325 Capsella rubella HOM05D006887 ORTHO05D004325 2.2e-13 80.5 227 33.0
Carub.0003s1843 Capsella rubella HOM05D006887 ORTHO05D004325 3.8e-13 79.7 240 33.8
BcaB04g20759 Brassica carinata HOM05D006887 ORTHO05D004325 6.5e-13 79.0 125 43.2
AL8G42910 Arabidopsis lyrata HOM05D006887 ORTHO05D004325 8.4e-13 78.6 233 32.2
AL3G31960 Arabidopsis lyrata HOM05D006887 ORTHO05D004325 1.1e-12 78.2 195 33.3
A04p12860 Brassica napus HOM05D006887 ORTHO05D004325 1.1e-12 78.2 71 57.7
BraA04t16949Z Brassica rapa HOM05D006887 ORTHO05D004325 1.1e-12 78.2 71 57.7
BolC8t50655H Brassica oleracea HOM05D007946 ORTHO05D004325 1.4e-12 77.8 215 34.9
BraA04t16961Z Brassica rapa HOM05D006887 ORTHO05D004325 1.4e-12 77.8 82 54.9
Carub.0007s3594 Capsella rubella HOM05D006887 ORTHO05D004325 1.4e-12 77.8 238 31.9
Sp1g35560 Schrenkiella parvula HOM05D007946 ORTHO05D004325 1.9e-12 77.4 219 34.7
A04p12980 Brassica napus HOM05D006887 ORTHO05D004325 2.5e-12 77.0 221 33.0
C06p38290 Brassica napus HOM05D007946 ORTHO05D004325 2.5e-12 77.0 107 43.0
BolC6t38928H Brassica oleracea HOM05D007946 ORTHO05D004325 2.5e-12 77.0 107 43.0
BraA04t16959Z Brassica rapa HOM05D006887 ORTHO05D004325 3.2e-12 76.6 71 59.2
BcaB06g25916 Brassica carinata HOM05D006887 ORTHO05D004325 7.1e-12 75.5 228 32.9
BcaB06g27442 Brassica carinata HOM05D006887 ORTHO05D004325 1.2e-11 74.7 62 61.3
A04p13000 Brassica napus HOM05D006887 ORTHO05D004325 1.2e-11 74.7 97 48.5
THA.LOC104804829 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 2.1e-11 73.9 196 34.7
BcaB06g27440 Brassica carinata HOM05D006887 ORTHO05D004325 2.7e-11 73.6 56 64.3
BcaB08g34810 Brassica carinata HOM05D006887 ORTHO05D004325 2.7e-11 73.6 91 46.2
AT5G65330 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 3.5e-11 73.2 237 31.2
Thhalv10005313m.g Eutrema salsugineum HOM05D006887 ORTHO05D004325 3.5e-11 73.2 194 34.0
THA.LOC109116041 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 3.5e-11 73.2 196 34.7
Thhalv10019780m.g Eutrema salsugineum HOM05D007946 ORTHO05D004325 4.6e-11 72.8 98 43.9
Sp2g28440 Schrenkiella parvula HOM05D006887 ORTHO05D004325 4.6e-11 72.8 207 30.9
BcaC01g03686 Brassica carinata HOM05D006887 ORTHO05D004325 7.9e-11 72.0 224 30.8
C03p49630 Brassica napus HOM05D006887 ORTHO05D004325 7.9e-11 72.0 224 30.8
BcaB06g27394 Brassica carinata HOM05D006887 ORTHO05D004325 1.0e-10 71.6 80 51.2
BcaB06g27414 Brassica carinata HOM05D006887 ORTHO05D004325 3.0e-10 70.1 62 58.1
THA.LOC109116042 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 3.0e-10 70.1 106 46.2
BcaB06g27671 Brassica carinata HOM05D006887 ORTHO05D004325 3.9e-10 69.7 82 47.6
BolC4t26260H Brassica oleracea HOM05D006887 ORTHO05D004325 5.1e-10 69.3 73 54.8
C04p46670 Brassica napus HOM05D006887 ORTHO05D004325 6.7e-10 68.9 71 53.5
BolC4t26255H Brassica oleracea HOM05D006887 ORTHO05D004325 6.7e-10 68.9 81 48.1
C04p46750 Brassica napus HOM05D006887 ORTHO05D004325 1.1e-09 68.2 73 53.4
BolC4t26262H Brassica oleracea HOM05D006887 ORTHO05D004325 1.1e-09 68.2 73 53.4
BcaC09g48822 Brassica carinata HOM05D006887 ORTHO05D004325 1.9e-09 67.4 233 30.0
C01p45590 Brassica napus HOM05D006887 ORTHO05D004325 1.9e-09 67.4 233 30.0
C04p46390 Brassica napus HOM05D006887 ORTHO05D004325 1.9e-09 67.4 62 56.5
BolC1t04520H Brassica oleracea HOM05D006887 ORTHO05D004325 1.9e-09 67.4 233 30.0
AT5G37415 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 2.5e-09 67.0 165 36.4
Thhalv10022126m.g Eutrema salsugineum HOM05D006887 ORTHO05D004325 2.5e-09 67.0 242 36.8
A01p35810 Brassica napus HOM05D006887 ORTHO05D004325 5.7e-09 65.9 211 30.8
CARHR262050 Cardamine hirsuta HOM05D006887 ORTHO05D004325 5.7e-09 65.9 87 44.8
AT4G02235 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 7.4e-09 65.5 205 32.2
A02p43880 Brassica napus HOM05D006887 ORTHO05D004325 9.7e-09 65.1 208 31.7
BraA02t09311Z Brassica rapa HOM05D006887 ORTHO05D004325 9.7e-09 65.1 208 31.7
BcaB06g27392 Brassica carinata HOM05D008478 ORTHO05D000740 1.3e-08 64.7 133 34.6
Manes.10G129900 Manihot esculenta HOM05D006887 ORTHO05D004325 1.6e-08 64.3 180 30.6
Aa31LG8G6660 Aethionema arabicum HOM05D006887 ORTHO05D004325 2.2e-08 63.9 176 33.5
AT4G11250 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 2.8e-08 63.5 242 28.1
THA.LOC104801507 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 2.8e-08 63.5 110 39.1
CARHR157630 Cardamine hirsuta HOM05D006887 ORTHO05D004325 4.8e-08 62.8 242 36.4
CARHR058360 Cardamine hirsuta HOM05D006887 ORTHO05D004325 1.4e-07 61.2 175 31.4
C02p64040 Brassica napus HOM05D006887 ORTHO05D004325 1.8e-07 60.8 213 29.1
BolC2t12470H Brassica oleracea HOM05D006887 ORTHO05D004325 1.8e-07 60.8 213 29.1
CARHR283740 Cardamine hirsuta HOM05D006887 ORTHO05D004325 1.8e-07 60.8 201 30.8
Aa31LG8G6650 Aethionema arabicum HOM05D006887 ORTHO05D004325 2.4e-07 60.5 89 47.2
Carub.0008s2621 Capsella rubella HOM05D006887 ORTHO05D004325 2.4e-07 60.5 41 65.9
BcaB06g27670 Brassica carinata HOM05D006887 ORTHO05D004325 3.1e-07 60.1 69 46.4
BcaC03g18328 Brassica carinata HOM05D006887 ORTHO05D004325 3.1e-07 60.1 213 29.1
Sp1g35140 Schrenkiella parvula HOM05D007946 ORTHO05D004325 3.1e-07 60.1 231 31.6
BraA01t03660Z Brassica rapa HOM05D006887 ORTHO05D004325 4.1e-07 59.7 162 33.3
THA.LOC104805962 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 5.3e-07 59.3 220 28.6
THA.LOC104810872 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 6.9e-07 58.9 314 24.8
Aa31LG8G6760 Aethionema arabicum HOM05D006887 ORTHO05D004325 3.4e-06 56.6 80 41.2


User provided reference genes

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