Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G35170 Arabidopsis lyrata HOM05D002159 ORTHO05D005625 5.7e-46 187.2 92 100.0
AL6G35190 Arabidopsis lyrata HOM05D002159 ORTHO05D005625 1.1e-44 183.0 90 98.9
Carub.0006s2160 Capsella rubella HOM05D002159 ORTHO05D005625 2.4e-44 181.8 90 97.8
AT5G23880 Arabidopsis thaliana HOM05D002159 ORTHO05D005625 4.1e-44 181.0 90 96.7
Sp2g23400 Schrenkiella parvula HOM05D002159 ORTHO05D005625 5.9e-43 177.2 90 94.4
BcaNung05469 Brassica carinata HOM05D002159 ORTHO05D005625 7.7e-43 176.8 90 93.3
CAN.G1175.3 Capsicum annuum HOM05D002159 ORTHO05D005625 1.3e-42 176.0 90 93.3
Migut.F01111 Erythranthe guttata HOM05D002159 ORTHO05D005625 1.3e-42 176.0 90 93.3
A06p34690 Brassica napus HOM05D002159 ORTHO05D005625 1.7e-42 175.6 90 92.2
C07p43800 Brassica napus HOM05D002159 ORTHO05D005625 1.7e-42 175.6 90 92.2
BolC7t44909H Brassica oleracea HOM05D002159 ORTHO05D005625 1.7e-42 175.6 90 92.2
BraA06t26396Z Brassica rapa HOM05D002159 ORTHO05D005625 1.7e-42 175.6 90 92.2
Nitab4.5_0004439g0160 Nicotiana tabacum HOM05D002159 ORTHO05D005625 1.7e-42 175.6 90 92.2
Thhalv10003707m.g Eutrema salsugineum HOM05D002159 ORTHO05D005625 3.8e-42 174.5 90 93.3
Aa31LG11G3180 Aethionema arabicum HOM05D002159 ORTHO05D005625 5.0e-42 174.1 90 93.3
Hma1.2p1_1604F.1_g293320 Hydrangea macrophylla HOM05D002159 ORTHO05D005625 5.0e-42 174.1 90 93.3
Nitab4.5_0000084g0030 Nicotiana tabacum HOM05D002159 ORTHO05D005625 5.0e-42 174.1 90 92.2
PGR142G0288 Punica granatum HOM05D002159 ORTHO05D005625 5.0e-42 174.1 90 92.2
COL.COLO4_28056 Corchorus olitorius HOM05D002159 ORTHO05D005625 6.5e-42 173.7 90 93.3
Thecc.03G179100 Theobroma cacao HOM05D002159 ORTHO05D005625 6.5e-42 173.7 90 92.2
Oeu028430.1 Olea europaea HOM05D002159 ORTHO05D005625 8.5e-42 173.3 90 91.1
CARHR189680 Cardamine hirsuta HOM05D002159 ORTHO05D005625 1.1e-41 172.9 90 93.3
Dinv28421 Davidia involucrata HOM05D002159 ORTHO05D005625 1.1e-41 172.9 90 92.2
Duzib205G0713 Durio zibethinus HOM05D002159 ORTHO05D005625 1.1e-41 172.9 90 92.2
Duzib084G0847 Durio zibethinus HOM05D002159 ORTHO05D005625 1.4e-41 172.6 90 92.2
Ciclev10004414m.g Citrus clementina HOM05D002159 ORTHO05D005625 1.9e-41 172.2 90 91.1
CiPaw.03G108100 Carya illinoinensis HOM05D002159 ORTHO05D005625 3.2e-41 171.4 90 88.9
Lalb_Chr03g0034671 Lupinus albus HOM05D002159 ORTHO05D005625 3.2e-41 171.4 90 91.1
Manes.01G126800 Manihot esculenta HOM05D002159 ORTHO05D005625 3.2e-41 171.4 90 92.2
Psat0s2150g0160 Pisum sativum HOM05D002159 ORTHO05D005625 3.2e-41 171.4 90 91.1
Solyc03g025540.3 Solanum lycopersicum HOM05D002159 ORTHO05D005625 3.2e-41 171.4 90 88.9
Sopen03g004380 Solanum pennellii HOM05D002159 ORTHO05D005625 3.2e-41 171.4 90 88.9
EL10Ac3g05612 Beta vulgaris HOM05D002159 ORTHO05D005625 4.2e-41 171.0 90 90.0
Eucgr.K00275 Eucalyptus grandis HOM05D002159 ORTHO05D005625 4.2e-41 171.0 90 92.2
ClCG05G008140 Citrullus lanatus HOM05D002201 ORTHO05D005625 5.5e-41 170.6 90 88.9
Lj2g0019958 Lotus japonicus HOM05D002159 ORTHO05D005625 5.5e-41 170.6 90 91.1
Gohir.A12G256700 Gossypium hirsutum HOM05D002159 ORTHO05D005625 7.2e-41 170.2 90 90.0
Gohir.D12G258000 Gossypium hirsutum HOM05D002159 ORTHO05D005625 7.2e-41 170.2 90 90.0
Gorai.008G276300 Gossypium raimondii HOM05D002159 ORTHO05D005625 7.2e-41 170.2 90 90.0
Lsat_1_v5_gn_2_132660 Lactuca sativa HOM05D002159 ORTHO05D005625 7.2e-41 170.2 90 90.0
MD07G1272900 Malus domestica HOM05D002159 ORTHO05D005625 7.2e-41 170.2 90 90.0
Prupe.2G296200 Prunus persica HOM05D002159 ORTHO05D005625 7.2e-41 170.2 90 91.1
Sed0009742 Sechium edule HOM05D002159 ORTHO05D005625 7.2e-41 170.2 90 87.8
TAR629G0581 Trochodendron aralioides HOM05D002159 ORTHO05D005625 7.2e-41 170.2 90 86.7
GSVIVG01028919001 Vitis vinifera HOM05D002159 ORTHO05D005625 7.2e-41 170.2 90 88.9
Glyma.16G182300 Glycine max HOM05D002159 ORTHO05D005625 9.4e-41 169.9 90 90.0
Hund04761 Selenicereus undatus HOM05D002159 ORTHO05D005625 9.4e-41 169.9 90 90.0
VMungo0464G0478 Vigna mungo HOM05D002159 ORTHO05D005625 9.4e-41 169.9 90 90.0
CSS0008751 Camellia sinensis var. sinensis HOM05D002159 ORTHO05D005625 1.2e-40 169.5 90 88.9
CSS0044503 Camellia sinensis var. sinensis HOM05D002159 ORTHO05D005625 1.2e-40 169.5 90 88.9
AUR62021167 Chenopodium quinoa HOM05D002159 ORTHO05D005625 1.2e-40 169.5 90 91.1
ECA238G4262 Erigeron canadensis HOM05D002159 ORTHO05D005625 1.2e-40 169.5 90 92.2
SalBow2G1087 Salvia bowleyana HOM05D002159 ORTHO05D005625 1.2e-40 169.5 90 88.9
TWI34G0379 Tripterygium wilfordii HOM05D002159 ORTHO05D005625 1.2e-40 169.5 90 87.8
Ca_14555_v3 Cicer arietinum L. HOM05D002159 ORTHO05D005625 1.6e-40 169.1 90 91.1
AUR62015961 Chenopodium quinoa HOM05D002159 ORTHO05D005625 2.1e-40 168.7 90 90.0
Cpa.g.c26789.4 Carica papaya HOM05D002159 ORTHO05D005625 2.7e-40 168.3 90 87.8
MELO3C006919.2 Cucumis melo HOM05D002159 ORTHO05D005625 3.6e-40 167.9 90 87.8
CsaV3_3G017220 Cucumis sativus L. HOM05D002159 ORTHO05D005625 3.6e-40 167.9 90 87.8
Nn1g01521 Nelumbo nucifera HOM05D002159 ORTHO05D005625 3.6e-40 167.9 90 86.7
SGA_v2.0_scaffold10G05332 Striga asiatica HOM05D002159 ORTHO05D005625 3.6e-40 167.9 90 88.9
arahy.Tifrunner.gnm1.ann1.F9YRCX Arachis hypogaea HOM05D002159 ORTHO05D005625 4.7e-40 167.5 90 87.8
arahy.Tifrunner.gnm1.ann1.JGS186 Arachis hypogaea HOM05D002159 ORTHO05D005625 4.7e-40 167.5 90 87.8
Rhsim03G0187300 Rhododendron simsii HOM05D002159 ORTHO05D005625 4.7e-40 167.5 90 87.8
QL09p013785 Quercus lobata HOM05D002159 ORTHO05D005625 6.1e-40 167.2 90 87.8
RcHm_v2.0_Chr1g0377671 Rosa chinensis HOM05D002159 ORTHO05D005625 6.1e-40 167.2 90 87.8
unitig_26.g10199 Utricularia gibba HOM05D002159 ORTHO05D005625 6.1e-40 167.2 90 87.8
CDE06G0059 Ceratophyllum demersum HOM05D002159 ORTHO05D005625 7.9e-40 166.8 90 84.4
Actinidia25881 Actinidia chinensis HOM05D002159 ORTHO05D005625 1.0e-39 166.4 90 87.8
HanXRQChr14g0462121 Helianthus annuus HOM05D002159 ORTHO05D005625 1.0e-39 166.4 90 90.0
Sc13g0008820 Simmondsia chinensis HOM05D002159 ORTHO05D005625 1.4e-39 166.0 90 86.7
FAN03G0857 Fragaria x ananassa HOM05D002159 ORTHO05D005625 1.8e-39 165.6 90 86.7
Glyma.09G136900 Glycine max HOM05D002159 ORTHO05D005625 1.8e-39 165.6 90 87.8
Phvul.004G114000 Phaseolus vulgaris HOM05D002159 ORTHO05D005625 2.3e-39 165.2 90 88.9
ATR0680G292 Amborella trichopoda HOM05D002159 ORTHO05D005625 3.0e-39 164.9 90 83.3
vmacro06665 Vaccinium macrocarpon HOM05D002159 ORTHO05D005625 3.0e-39 164.9 90 86.7
Cc02_g02800 Coffea canephora HOM05D002159 ORTHO05D005625 3.9e-39 164.5 90 85.6
FvH4_7g29660 Fragaria vesca HOM05D002159 ORTHO05D005625 3.9e-39 164.5 90 85.6
FAN06G3579 Fragaria x ananassa HOM05D002159 ORTHO05D005625 3.9e-39 164.5 90 85.6
FAN06G4426 Fragaria x ananassa HOM05D002159 ORTHO05D005625 3.9e-39 164.5 90 85.6
Medtr1g050492 Medicago truncatula HOM05D002159 ORTHO05D005625 5.2e-39 164.1 90 87.8
Ah.13g068620 Amaranthus hybridus HOM05D002159 ORTHO05D005625 6.7e-39 163.7 90 84.4
FAN01G0872 Fragaria x ananassa HOM05D002159 ORTHO05D005625 6.7e-39 163.7 90 85.6
DCAR_026334 Daucus carota HOM05D002159 ORTHO05D005625 1.1e-38 162.9 90 86.7
FAN10G0118 Fragaria x ananassa HOM05D002159 ORTHO05D005625 1.1e-38 162.9 90 85.6
FAN03G1172 Fragaria x ananassa HOM05D002159 ORTHO05D005625 2.0e-38 162.2 90 84.4
Peaxi162Scf00444g00532 Petunia axillaris HOM05D002159 ORTHO05D005625 2.6e-38 161.8 84 89.3
Atru.chr1.430 Acer truncatum HOM05D002159 ORTHO05D005625 4.4e-38 161.0 90 82.2
Glyma.11G171004 Glycine max HOM05D002159 ORTHO05D005625 4.4e-38 161.0 90 84.4
Potri.001G231800 Populus trichocarpa HOM05D002159 ORTHO05D005625 4.4e-38 161.0 90 85.6
Aqoxy7G00327 Aquilegia oxysepala HOM05D002159 ORTHO05D005625 5.7e-38 160.6 90 82.2
Sabra16G0139100 Salix brachista HOM05D002159 ORTHO05D005625 7.4e-38 160.2 90 84.4
PSO478G3748 Papaver somniferum HOM05D002159 ORTHO05D005625 9.7e-38 159.8 90 84.4
PSO782G0249 Papaver somniferum HOM05D002159 ORTHO05D005625 9.7e-38 159.8 90 84.4
Haze_13669 Corylus avellana HOM05D002159 ORTHO05D005625 1.7e-37 159.1 89 83.1
CANSAT21G0489 Cannabis sativa HOM05D002159 ORTHO05D005625 2.8e-37 158.3 90 82.2
HPP92_025730 Vanilla planifolia HOM05D002159 ORTHO05D005625 8.2e-37 156.8 90 82.2
HPP92_025761 Vanilla planifolia HOM05D002159 ORTHO05D005625 8.2e-37 156.8 90 82.2
Cfa023191 Carpinus fangiana HOM05D002159 ORTHO05D005625 9.1e-36 153.3 85 82.4
SHI10392 Sapria himalayana HOM05D002159 ORTHO05D005625 2.6e-35 151.8 98 75.5
Zm00001eb162800 Zea mays HOM05D002159 ORTHO05D005625 3.5e-35 151.4 90 76.7
HPP92_025733 Vanilla planifolia HOM05D002159 ORTHO05D005625 1.7e-34 149.1 93 78.5
Os09g0569400 Oryza sativa ssp. japonica HOM05D002159 ORTHO05D005625 2.9e-34 148.3 90 76.7
PSO423G0230 Papaver somniferum HOM05D002159 ORTHO05D005625 2.3e-31 138.7 87 77.0
Psat0s1874g0200 Pisum sativum HOM05D002159 ORTHO05D005625 6.7e-31 137.1 70 92.9
SMO111G0062 Selaginella moellendorffii HOM05D002159 ORTHO05D005625 1.5e-30 136.0 91 67.0
Actinidia34125 Actinidia chinensis HOM05D002159 ORTHO05D005625 4.4e-30 134.4 78 82.1
Pp3c9_11100 Physcomitrium patens HOM05D002159 ORTHO05D005625 6.3e-29 130.6 90 67.8
Mapoly0007s0176 Marchantia polymorpha HOM05D002159 ORTHO05D005625 1.1e-28 129.8 88 65.9
CBR_g4749 Chara braunii HOM05D002159 ORTHO05D005625 7.0e-28 127.1 90 64.4
Glyma.11G170602 Glycine max HOM05D002159 ORTHO05D005625 2.0e-27 125.6 69 85.5
MBI17_g39903_MAGBIO Magnolia biondii HOM05D002159 ORTHO05D005625 2.0e-27 125.6 91 67.0
Glyma.11G171001 Glycine max HOM05D002159 ORTHO05D005625 1.0e-26 123.2 69 84.1
AagrBONN_evm.TU.Sc2ySwM_117.3689 Anthoceros agrestis HOM05D002159 ORTHO05D005625 2.9e-26 121.7 90 62.2
MCO01G234 Micromonas commoda HOM05D002159 ORTHO05D005625 9.4e-25 116.7 91 58.2
MCO01G235 Micromonas commoda HOM05D002159 ORTHO05D005625 9.4e-25 116.7 91 58.2
Cre12.g487600 Chlamydomonas reinhardtii HOM05D002159 ORTHO05D005625 3.7e-21 104.8 91 51.6
PRCOL_00000390 Prasinoderma coloniale HOM05D002159 ORTHO05D005625 6.3e-21 104.0 90 60.0
Haze_26919 Corylus avellana HOM05D002159 ORTHO05D005625 2.0e-19 99.0 90 48.9
TPR.G298 Trifolium pratense HOM05D002159 ORTHO05D005625 2.7e-19 98.6 53 86.8
SEGI_13156 Sequoiadendron giganteum HOM05D002159 ORTHO05D005625 4.7e-16 87.8 49 77.6
BcaNung01838 Brassica carinata HOM05D002159 ORTHO05D005625 6.8e-15 84.0 43 93.0
Lj8C239G4 Lonicera japonica HOM05D002159 ORTHO05D005625 9.8e-14 80.1 40 95.0
TPR.G8152 Trifolium pratense HOM05D002159 ORTHO05D005625 9.8e-14 80.1 43 86.0
BcaB06g27772 Brassica carinata HOM05D002159 ORTHO05D024008 1.3e-13 79.7 41 90.2
THA.LOC104821393 Tarenaya hassleriana HOM05D002159 ORTHO05D005625 4.9e-13 77.8 41 90.2
BcaB04g17556 Brassica carinata HOM05D002159 ORTHO05D024008 8.3e-13 77.0 41 90.2
BcaB07g33285 Brassica carinata HOM05D002159 ORTHO05D024008 1.1e-12 76.6 41 87.8
SEGI_24581 Sequoiadendron giganteum HOM05D002159 ORTHO05D005625 2.0e-11 72.4 41 80.5
SEGI_02609 Sequoiadendron giganteum HOM05D059693 ORTHO05D386180 1.8e-07 59.3 36 66.7
SEGI_23905 Sequoiadendron giganteum HOM05D059693 ORTHO05D384175 1.8e-07 59.3 36 66.7
BcaB01g03611 Brassica carinata HOM05D002159 ORTHO05D024008 1.2e-06 56.6 91 41.8
Haze_26947 Corylus avellana HOM05D002001 ORTHO05D006833 1.5e-06 56.2 96 32.3


User provided reference genes

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