Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G31230 Arabidopsis lyrata HOM05D001374 ORTHO05D013421 2.3e-54 215.3 107 100.0
Carub.0001s2516 Capsella rubella HOM05D001374 ORTHO05D004296 1.9e-32 142.5 99 72.7
Aa31LG2G6960 Aethionema arabicum HOM05D001374 ORTHO05D004296 3.5e-31 138.3 98 71.4
Eucgr.B03004 Eucalyptus grandis HOM05D001374 ORTHO05D004296 3.5e-31 138.3 106 68.9
THA.LOC104821915 Tarenaya hassleriana HOM05D001374 ORTHO05D004296 4.6e-31 137.9 99 70.7
AL1G39980 Arabidopsis lyrata HOM05D001374 ORTHO05D004296 1.3e-30 136.3 99 67.7
Cpa.g.sc798.2 Carica papaya HOM05D001374 ORTHO05D004296 1.3e-30 136.3 101 69.3
Medtr1g110430 Medicago truncatula HOM05D001374 ORTHO05D004296 2.3e-30 135.6 104 64.4
CARHR026140 Cardamine hirsuta HOM05D001374 ORTHO05D004296 3.0e-30 135.2 99 69.7
GSVIVG01018308001 Vitis vinifera HOM05D001374 ORTHO05D004296 3.9e-30 134.8 104 66.3
AT1G25350 Arabidopsis thaliana HOM05D001374 ORTHO05D004296 1.1e-29 133.3 99 65.7
Atru.chr11.140 Acer truncatum HOM05D001374 ORTHO05D004296 3.3e-29 131.7 101 66.3
Psat6g226160 Pisum sativum HOM05D001374 ORTHO05D004296 4.3e-29 131.3 102 63.7
QL01p040852 Quercus lobata HOM05D001374 ORTHO05D004296 4.3e-29 131.3 101 64.4
CiPaw.06G018700 Carya illinoinensis HOM05D001374 ORTHO05D004296 5.6e-29 131.0 101 66.3
Actinidia16665 Actinidia chinensis HOM05D001374 ORTHO05D004296 9.6e-29 130.2 99 65.7
Phvul.007G028800 Phaseolus vulgaris HOM05D001374 ORTHO05D004296 1.6e-28 129.4 102 64.7
TPR.G4913 Trifolium pratense HOM05D001374 ORTHO05D004296 2.1e-28 129.0 97 66.0
VMungo0720G1962 Vigna mungo HOM05D001374 ORTHO05D004296 2.1e-28 129.0 102 64.7
Prupe.1G313400 Prunus persica HOM05D001374 ORTHO05D004296 2.8e-28 128.6 101 62.4
MD13G1039800 Malus domestica HOM05D001374 ORTHO05D004296 3.6e-28 128.3 101 63.4
Nn5g28146 Nelumbo nucifera HOM05D001374 ORTHO05D004296 4.8e-28 127.9 99 65.7
CSS0034691 Camellia sinensis var. sinensis HOM05D001374 ORTHO05D004296 6.2e-28 127.5 100 64.0
Hma1.2p1_0061F.1_g033680 Hydrangea macrophylla HOM05D001374 ORTHO05D004296 8.1e-28 127.1 99 63.6
GSVIVG01011871001 Vitis vinifera HOM05D001374 ORTHO05D004296 8.1e-28 127.1 107 61.7
Ca_11159_v3 Cicer arietinum L. HOM05D001374 ORTHO05D004296 1.1e-27 126.7 102 59.8
Dinv31622 Davidia involucrata HOM05D001374 ORTHO05D004296 1.1e-27 126.7 107 62.6
BraA09t39421Z Brassica rapa HOM05D001374 ORTHO05D004296 1.4e-27 126.3 104 61.5
Duzib248G1131 Durio zibethinus HOM05D001374 ORTHO05D004296 1.4e-27 126.3 99 62.6
Thecc.07G144700 Theobroma cacao HOM05D001374 ORTHO05D004296 1.4e-27 126.3 107 61.7
A09p39220 Brassica napus HOM05D001374 ORTHO05D004296 1.8e-27 125.9 104 61.5
PGR102G0253 Punica granatum HOM05D001374 ORTHO05D004296 1.8e-27 125.9 106 61.3
Ciclev10014320m.g Citrus clementina HOM05D001374 ORTHO05D004296 2.4e-27 125.6 105 62.9
FAN07G0461 Fragaria x ananassa HOM05D001374 ORTHO05D004296 2.4e-27 125.6 101 63.4
Lalb_Chr02g0145891 Lupinus albus HOM05D001374 ORTHO05D004296 3.1e-27 125.2 102 61.8
SGA_v2.0_scaffold38G14957 Striga asiatica HOM05D001374 ORTHO05D004296 4.0e-27 124.8 99 63.6
FvH4_4g27080 Fragaria vesca HOM05D001374 ORTHO05D004296 5.3e-27 124.4 101 62.4
FAN12G2409 Fragaria x ananassa HOM05D001374 ORTHO05D004296 5.3e-27 124.4 101 62.4
FAN12G3668 Fragaria x ananassa HOM05D001374 ORTHO05D004296 5.3e-27 124.4 101 62.4
Nitab4.5_0003867g0050 Nicotiana tabacum HOM05D001374 ORTHO05D004296 5.3e-27 124.4 102 60.8
Solyc05g009220.3 Solanum lycopersicum HOM05D001374 ORTHO05D004296 6.9e-27 124.0 105 59.0
Lj4g0028120 Lotus japonicus HOM05D001374 ORTHO05D004296 9.0e-27 123.6 102 62.7
MD16G1040700 Malus domestica HOM05D001374 ORTHO05D004296 9.0e-27 123.6 101 61.4
Rhsim09G0106300 Rhododendron simsii HOM05D001374 ORTHO05D004296 9.0e-27 123.6 98 65.3
FAN22G1881 Fragaria x ananassa HOM05D001374 ORTHO05D004296 1.5e-26 122.9 101 61.4
RcHm_v2.0_Chr1g0324791 Rosa chinensis HOM05D001374 ORTHO05D004296 1.5e-26 122.9 103 60.2
Sopen05g004940 Solanum pennellii HOM05D001374 ORTHO05D004296 1.5e-26 122.9 105 59.0
BcaC05g26473 Brassica carinata HOM05D001374 ORTHO05D004296 2.0e-26 122.5 104 60.6
BolC5t31249H Brassica oleracea HOM05D001374 ORTHO05D004296 2.0e-26 122.5 104 60.6
Thhalv10006840m.g Eutrema salsugineum HOM05D001374 ORTHO05D004296 2.0e-26 122.5 107 61.7
FAN17G1418 Fragaria x ananassa HOM05D001374 ORTHO05D004296 2.0e-26 122.5 101 60.4
RcHm_v2.0_Chr6g0267171 Rosa chinensis HOM05D001374 ORTHO05D004296 2.0e-26 122.5 101 61.4
Aqoxy3G00265 Aquilegia oxysepala HOM05D001374 ORTHO05D004296 2.6e-26 122.1 101 60.4
Gohir.A05G321600 Gossypium hirsutum HOM05D001374 ORTHO05D004296 2.6e-26 122.1 101 59.4
Gohir.D05G323900 Gossypium hirsutum HOM05D001374 ORTHO05D004296 2.6e-26 122.1 101 60.4
Gorai.009G347600 Gossypium raimondii HOM05D001374 ORTHO05D004296 2.6e-26 122.1 101 60.4
CSS0047778 Camellia sinensis var. sinensis HOM05D001374 ORTHO05D004296 3.4e-26 121.7 99 62.6
CAN.G610.65 Capsicum annuum HOM05D001374 ORTHO05D004296 3.4e-26 121.7 105 58.1
Cfa015867 Carpinus fangiana HOM05D001374 ORTHO05D004296 3.4e-26 121.7 101 63.4
PGSC0003DMG400014572 Solanum tuberosum HOM05D001374 ORTHO05D004296 3.4e-26 121.7 105 58.1
Haze_00619 Corylus avellana HOM05D001374 ORTHO05D004296 4.5e-26 121.3 101 64.4
Potri.008G122200 Populus trichocarpa HOM05D001374 ORTHO05D004296 4.5e-26 121.3 105 61.0
RcHm_v2.0_Chr4g0434881 Rosa chinensis HOM05D001374 ORTHO05D004296 4.5e-26 121.3 98 63.3
Sp1g22870 Schrenkiella parvula HOM05D001374 ORTHO05D004296 4.5e-26 121.3 107 60.7
Lalb_Chr06g0166001 Lupinus albus HOM05D001374 ORTHO05D004296 5.8e-26 120.9 102 59.8
Oeu054996.3 Olea europaea HOM05D001374 ORTHO05D004296 5.8e-26 120.9 100 60.0
AUR62002537 Chenopodium quinoa HOM05D001374 ORTHO05D004296 7.6e-26 120.6 96 61.5
AUR62023655 Chenopodium quinoa HOM05D001374 ORTHO05D004296 7.6e-26 120.6 98 60.2
Sabra08G0092800 Salix brachista HOM05D001374 ORTHO05D004296 9.9e-26 120.2 103 61.2
Manes.14G104300 Manihot esculenta HOM05D001374 ORTHO05D004296 1.3e-25 119.8 95 63.2
BcaC01g03668 Brassica carinata HOM05D001374 ORTHO05D013421 1.7e-25 119.4 104 57.7
C05p25160 Brassica napus HOM05D001374 ORTHO05D004296 1.7e-25 119.4 104 59.6
Glyma.10G272800 Glycine max HOM05D001374 ORTHO05D004296 1.7e-25 119.4 102 60.8
Glyma.20G117150 Glycine max HOM05D001374 ORTHO05D004296 1.7e-25 119.4 102 59.8
Manes.06G066500 Manihot esculenta HOM05D001374 ORTHO05D004296 1.7e-25 119.4 106 59.4
Potri.010G122866 Populus trichocarpa HOM05D001374 ORTHO05D004296 1.7e-25 119.4 103 58.3
TWI79G1774 Tripterygium wilfordii HOM05D001374 ORTHO05D004296 1.7e-25 119.4 100 64.0
BcaC05g26679 Brassica carinata HOM05D001374 ORTHO05D004296 2.2e-25 119.0 107 58.9
Oeu059498.1 Olea europaea HOM05D001374 ORTHO05D004296 2.2e-25 119.0 100 61.0
Peaxi162Scf00753g00332 Petunia axillaris HOM05D001374 ORTHO05D004296 2.2e-25 119.0 107 57.9
TAR374G1395 Trochodendron aralioides HOM05D001374 ORTHO05D004296 2.9e-25 118.6 99 59.6
MSTRG.850 Avicennia marina HOM05D001374 ORTHO05D004296 3.8e-25 118.2 100 61.0
vmacro10571 Vaccinium macrocarpon HOM05D001374 ORTHO05D004296 3.8e-25 118.2 96 63.5
Migut.L01049 Erythranthe guttata HOM05D001374 ORTHO05D004296 4.9e-25 117.9 96 61.5
Migut.O00776 Erythranthe guttata HOM05D001374 ORTHO05D004296 4.9e-25 117.9 96 61.5
TAR371G0094 Trochodendron aralioides HOM05D001374 ORTHO05D004296 4.9e-25 117.9 99 60.6
Ah.03g138230 Amaranthus hybridus HOM05D001374 ORTHO05D004296 6.4e-25 117.5 99 58.6
CsaV3_2G016280 Cucumis sativus L. HOM05D001374 ORTHO05D004296 6.4e-25 117.5 100 59.0
Lsat_1_v5_gn_2_80001 Lactuca sativa HOM05D001374 ORTHO05D004296 6.4e-25 117.5 99 59.6
Lsat_1_v5_gn_8_40760 Lactuca sativa HOM05D001374 ORTHO05D004296 6.4e-25 117.5 99 59.6
MELO3C020839.2 Cucumis melo HOM05D001374 ORTHO05D004296 8.4e-25 117.1 100 59.0
CsaV3_2G014770 Cucumis sativus L. HOM05D001374 ORTHO05D004296 8.4e-25 117.1 102 57.8
Sed0001283 Sechium edule HOM05D001374 ORTHO05D004296 8.4e-25 117.1 102 56.9
TAR371G0884 Trochodendron aralioides HOM05D001374 ORTHO05D004296 8.4e-25 117.1 99 60.6
ATR0691G154 Amborella trichopoda HOM05D001374 ORTHO05D004296 1.1e-24 116.7 102 59.8
AUR62002847 Chenopodium quinoa HOM05D001374 ORTHO05D004296 1.1e-24 116.7 98 60.2
HanXRQChr16g0508691 Helianthus annuus HOM05D001374 ORTHO05D004296 1.1e-24 116.7 99 58.6
EL10Ac6g14344 Beta vulgaris HOM05D001374 ORTHO05D004296 1.4e-24 116.3 98 59.2
HanXRQChr12g0371141 Helianthus annuus HOM05D001374 ORTHO05D004296 1.4e-24 116.3 99 58.6
CiPaw.05G239400 Carya illinoinensis HOM05D001374 ORTHO05D004296 1.9e-24 115.9 102 60.8
MELO3C023301.2 Cucumis melo HOM05D001374 ORTHO05D004296 1.9e-24 115.9 102 57.8
PSO063G7347 Papaver somniferum HOM05D001374 ORTHO05D004296 1.9e-24 115.9 100 58.0
ClCG11G004350 Citrullus lanatus HOM05D001374 ORTHO05D004296 2.4e-24 115.5 102 56.9
DCAR_021035 Daucus carota HOM05D001374 ORTHO05D004296 2.4e-24 115.5 102 56.9
DCAR_023648 Daucus carota HOM05D001374 ORTHO05D004296 3.2e-24 115.2 109 58.7
SalBow8G3975 Salvia bowleyana HOM05D001374 ORTHO05D004296 3.2e-24 115.2 100 58.0
SalBow8G5161 Salvia bowleyana HOM05D001374 ORTHO05D004296 3.2e-24 115.2 100 58.0
Duzib251G0305 Durio zibethinus HOM05D001374 ORTHO05D004296 4.2e-24 114.8 107 56.1
TAR371G0932 Trochodendron aralioides HOM05D001374 ORTHO05D004296 4.2e-24 114.8 99 59.6
CANSAT56G0741 Cannabis sativa HOM05D001374 ORTHO05D004296 7.1e-24 114.0 101 58.4
Hund20774 Selenicereus undatus HOM05D001374 ORTHO05D004296 7.1e-24 114.0 96 60.4
ClCG02G012120 Citrullus lanatus HOM05D001374 ORTHO05D004296 1.2e-23 113.2 100 58.0
ECA233G2275 Erigeron canadensis HOM05D001374 ORTHO05D004296 1.2e-23 113.2 100 58.0
PSO782G3382 Papaver somniferum HOM05D001374 ORTHO05D004296 4.6e-23 111.3 101 57.4
Dinv21062 Davidia involucrata HOM05D001374 ORTHO05D004296 6.0e-23 110.9 85 65.9
MBI16_g23453_MAGBIO Magnolia biondii HOM05D001374 ORTHO05D004296 6.0e-23 110.9 101 56.4
CDE07G1626 Ceratophyllum demersum HOM05D001374 ORTHO05D013421 7.9e-23 110.5 95 60.0
Cc11_g09920 Coffea canephora HOM05D001374 ORTHO05D004296 1.3e-22 109.8 97 56.7
Sed0019956 Sechium edule HOM05D001374 ORTHO05D004296 1.3e-22 109.8 101 53.5
Sc14g0007390 Simmondsia chinensis HOM05D001374 ORTHO05D004296 1.3e-22 109.8 101 58.4
SEGI_36555 Sequoiadendron giganteum HOM05D001374 ORTHO05D004296 2.3e-22 109.0 108 55.6
arahy.Tifrunner.gnm1.ann1.VKD07K Arachis hypogaea HOM05D001374 ORTHO05D004296 5.1e-22 107.8 102 55.9
MSTRG.2228 Avicennia marina HOM05D001374 ORTHO05D004296 5.1e-22 107.8 100 53.0
arahy.Tifrunner.gnm1.ann1.DTRW9U Arachis hypogaea HOM05D001374 ORTHO05D004296 8.7e-22 107.1 102 55.9
HPP92_021791 Vanilla planifolia HOM05D001374 ORTHO05D004296 5.6e-21 104.4 98 53.1
Os05g0182800 Oryza sativa ssp. japonica HOM05D001374 ORTHO05D004296 1.4e-19 99.8 97 55.7
Os01g0185200 Oryza sativa ssp. japonica HOM05D001374 ORTHO05D004296 2.4e-19 99.0 97 53.6
AagrBONN_evm.TU.Sc2ySwM_117.3741 Anthoceros agrestis HOM05D001374 ORTHO05D004296 9.0e-19 97.1 101 48.5
Zm00001eb121810 Zea mays HOM05D001374 ORTHO05D004296 4.9e-17 91.3 97 49.5
COL.COLO4_06769 Corchorus olitorius HOM05D001374 ORTHO05D004296 6.4e-17 90.9 107 48.6
Carub.0002s1482 Capsella rubella HOM05D001374 ORTHO05D004296 1.1e-16 90.1 99 50.5
Sabra10G0093000 Salix brachista HOM05D001374 ORTHO05D004296 5.5e-16 87.8 103 48.5
COL.COLO4_07078 Corchorus olitorius HOM05D001374 ORTHO05D004296 7.1e-16 87.4 99 47.5
Pp3c1_19680 Physcomitrium patens HOM05D001374 ORTHO05D004296 2.3e-14 82.4 97 45.4
AagrBONN_evm.TU.Sc2ySwM_368.245 Anthoceros agrestis HOM05D000436 ORTHO05D000678 6.7e-14 80.9 94 45.7
BolC3t17283H Brassica oleracea HOM05D001374 ORTHO05D013421 1.9e-13 79.3 104 45.2
SMO347G0322 Selaginella moellendorffii HOM05D001374 ORTHO05D004296 1.3e-12 76.6 97 45.4
Cre14.g614900 Chlamydomonas reinhardtii HOM05D001374 ORTHO05D004296 2.8e-12 75.5 94 39.4
Mapoly0089s0016 Marchantia polymorpha HOM05D001374 ORTHO05D013421 3.7e-12 75.1 94 41.5
C03p83240 Brassica napus HOM05D001374 ORTHO05D013421 8.2e-12 73.9 60 60.0
BcaC02g12764 Brassica carinata HOM05D001374 ORTHO05D013421 1.8e-11 72.8 58 60.3
C04p02560 Brassica napus HOM05D001374 ORTHO05D013421 1.8e-11 72.8 58 60.3
BolC4t21900H Brassica oleracea HOM05D001374 ORTHO05D013421 1.8e-11 72.8 58 60.3
PRCOL_00001723 Prasinoderma coloniale HOM05D001374 ORTHO05D004296 6.9e-11 70.9 91 40.7
SMO361G0577 Selaginella moellendorffii HOM05D001374 ORTHO05D004296 1.5e-10 69.7 90 45.6
C07p30590 Brassica napus HOM05D001374 ORTHO05D013421 3.4e-10 68.6 60 56.7
BolC7t43598H Brassica oleracea HOM05D001374 ORTHO05D013421 4.5e-10 68.2 58 56.9
BraA04t17049Z Brassica rapa HOM05D001374 ORTHO05D013421 7.6e-10 67.4 104 42.3
BraA05t19512Z Brassica rapa HOM05D001374 ORTHO05D013421 6.5e-09 64.3 60 55.0
Ah.02g127600 Amaranthus hybridus HOM05D001374 ORTHO05D013421 4.2e-08 61.6 86 44.2
unitig_22.g5575 Utricularia gibba HOM05D001374 ORTHO05D004296 5.5e-08 61.2 100 38.0
unitig_24.g30583 Utricularia gibba HOM05D001374 ORTHO05D004296 5.5e-08 61.2 100 38.0
SMO361G0624 Selaginella moellendorffii HOM05D001374 ORTHO05D004296 7.1e-08 60.8 90 43.3
Nitab4.5_0001616g0020 Nicotiana tabacum HOM05D001374 ORTHO05D004296 7.9e-07 57.4 50 54.0
C03p49890 Brassica napus HOM05D001374 ORTHO05D013421 6.7e-06 54.3 106 37.7


User provided reference genes

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