Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G28370 Arabidopsis lyrata HOM05D006076 ORTHO05D007506 1.9e-214 748.8 366 100.0
AT5G17290 Arabidopsis thaliana HOM05D006076 ORTHO05D007506 4.4e-190 667.9 338 96.2
CARHR195920 Cardamine hirsuta HOM05D006076 ORTHO05D007506 5.9e-179 630.9 338 90.8
Thhalv10014026m.g Eutrema salsugineum HOM05D006076 ORTHO05D007506 6.5e-178 627.5 341 89.7
Carub.0006s1548 Capsella rubella HOM05D006076 ORTHO05D007506 3.2e-177 625.2 341 90.3
Sp6g26940 Schrenkiella parvula HOM05D006076 ORTHO05D007506 8.8e-175 617.1 339 88.5
BcaB08g36791 Brassica carinata HOM05D006076 ORTHO05D007506 2.0e-171 605.9 337 88.4
BcaC03g18547 Brassica carinata HOM05D006076 ORTHO05D007506 1.3e-170 603.2 337 86.6
BcaC04g18810 Brassica carinata HOM05D006076 ORTHO05D007506 2.3e-170 602.4 338 87.6
A02p04100 Brassica napus HOM05D006076 ORTHO05D007506 8.6e-170 600.5 348 84.8
C02p08950 Brassica napus HOM05D006076 ORTHO05D007506 1.1e-169 600.1 338 86.4
BolC2t06804H Brassica oleracea HOM05D006076 ORTHO05D007506 1.1e-169 600.1 338 86.4
BraA02t05373Z Brassica rapa HOM05D006076 ORTHO05D007506 1.9e-169 599.4 338 86.1
BolC9t58826H Brassica oleracea HOM05D006076 ORTHO05D007506 4.0e-167 591.7 338 86.1
BraA10t44270Z Brassica rapa HOM05D006076 ORTHO05D007506 6.8e-167 590.9 339 86.7
A10p22110 Brassica napus HOM05D006076 ORTHO05D007506 8.9e-167 590.5 339 86.7
Aa31LG11G12390 Aethionema arabicum HOM05D006076 ORTHO05D007506 1.1e-164 583.6 345 83.2
C09p59900 Brassica napus HOM05D006076 ORTHO05D007506 1.2e-160 570.1 383 76.0
THA.LOC104820862 Tarenaya hassleriana HOM05D006076 ORTHO05D007506 5.4e-156 554.7 345 78.6
TWI53G1019 Tripterygium wilfordii HOM05D006076 ORTHO05D007506 1.1e-135 487.3 358 65.4
TWI74G1437 Tripterygium wilfordii HOM05D006076 ORTHO05D007506 1.3e-130 470.3 357 63.3
Dinv19079 Davidia involucrata HOM05D006076 ORTHO05D007506 1.7e-130 469.9 359 63.2
Thecc.04G060400 Theobroma cacao HOM05D006076 ORTHO05D007506 1.5e-129 466.8 365 62.2
GSVIVG01013049001 Vitis vinifera HOM05D006076 ORTHO05D007506 1.5e-129 466.8 343 64.4
Lalb_Chr17g0345871 Lupinus albus HOM05D006076 ORTHO05D007506 1.9e-129 466.5 344 63.7
Ciclev10005246m.g Citrus clementina HOM05D006076 ORTHO05D007506 9.6e-129 464.2 357 63.9
LjContig00141g0009861 Lotus japonicus HOM05D006076 ORTHO05D007506 4.8e-128 461.8 340 64.1
Rhsim10G0185200 Rhododendron simsii HOM05D006076 ORTHO05D007506 4.8e-128 461.8 361 62.3
CiPaw.11G066500 Carya illinoinensis HOM05D006076 ORTHO05D007506 6.2e-128 461.5 350 63.4
MD08G1242300 Malus domestica HOM05D006076 ORTHO05D007506 8.1e-128 461.1 359 62.4
QL04p075342 Quercus lobata HOM05D006076 ORTHO05D007506 1.8e-127 459.9 352 63.4
COL.COLO4_20049 Corchorus olitorius HOM05D006076 ORTHO05D007506 3.1e-127 459.1 359 62.4
TPR.G5335 Trifolium pratense HOM05D006076 ORTHO05D007506 3.1e-127 459.1 344 62.2
SGA_v2.0_scaffold115G32050 Striga asiatica HOM05D006076 ORTHO05D007506 4.0e-127 458.8 338 65.1
Glyma.14G210200 Glycine max HOM05D006076 ORTHO05D007506 9.0e-127 457.6 339 62.5
MD15G1436000 Malus domestica HOM05D006076 ORTHO05D007506 9.0e-127 457.6 363 62.5
Nitab4.5_0002648g0050 Nicotiana tabacum HOM05D006076 ORTHO05D007506 2.0e-126 456.4 355 62.5
arahy.Tifrunner.gnm1.ann1.T03I92 Arachis hypogaea HOM05D006076 ORTHO05D007506 4.4e-126 455.3 348 62.9
DCAR_003407 Daucus carota HOM05D006076 ORTHO05D007506 4.4e-126 455.3 358 61.2
Manes.01G123200 Manihot esculenta HOM05D006076 ORTHO05D007506 1.7e-125 453.4 359 61.3
Sopen02g011760 Solanum pennellii HOM05D006076 ORTHO05D007506 2.2e-125 453.0 376 58.5
arahy.Tifrunner.gnm1.ann1.19NIP2 Arachis hypogaea HOM05D006076 ORTHO05D007506 2.9e-125 452.6 346 62.4
Nitab4.5_0000005g0100 Nicotiana tabacum HOM05D006076 ORTHO05D007506 3.8e-125 452.2 356 61.8
FAN04G0499 Fragaria x ananassa HOM05D006076 ORTHO05D007506 4.9e-125 451.8 363 60.3
Gohir.D11G176000 Gossypium hirsutum HOM05D006076 ORTHO05D007506 4.9e-125 451.8 359 60.7
FAN08G1959 Fragaria x ananassa HOM05D006076 ORTHO05D007506 1.1e-124 450.7 363 60.1
Potri.017G139700 Populus trichocarpa HOM05D006076 ORTHO05D007506 1.1e-124 450.7 356 61.8
Phvul.008G241000 Phaseolus vulgaris HOM05D006076 ORTHO05D007506 1.4e-124 450.3 340 62.4
PGR042G3996 Punica granatum HOM05D006076 ORTHO05D007506 1.9e-124 449.9 358 61.2
Eucgr.J01641 Eucalyptus grandis HOM05D006076 ORTHO05D007506 2.4e-124 449.5 360 61.1
FvH4_5g28670 Fragaria vesca HOM05D006076 ORTHO05D007506 2.4e-124 449.5 356 60.7
Glyma.02G240700 Glycine max HOM05D006076 ORTHO05D007506 2.4e-124 449.5 340 62.9
Sabra17G0117900 Salix brachista HOM05D006076 ORTHO05D007506 2.4e-124 449.5 355 61.7
Cc07_g12790 Coffea canephora HOM05D006076 ORTHO05D007506 4.2e-124 448.7 366 57.9
TAR629G1722 Trochodendron aralioides HOM05D006076 ORTHO05D007506 4.2e-124 448.7 365 60.5
Ca_05760_v3 Cicer arietinum L. HOM05D006076 ORTHO05D007506 9.3e-124 447.6 344 61.9
VMungo0647G0600 Vigna mungo HOM05D006076 ORTHO05D007506 9.3e-124 447.6 337 63.2
FAN18G0334 Fragaria x ananassa HOM05D006076 ORTHO05D007506 1.2e-123 447.2 356 60.4
RcHm_v2.0_Chr7g0220631 Rosa chinensis HOM05D006076 ORTHO05D007506 1.6e-123 446.8 363 60.6
CSS0031022 Camellia sinensis var. sinensis HOM05D006076 ORTHO05D007506 2.7e-123 446.0 368 61.1
Actinidia17164 Actinidia chinensis HOM05D006076 ORTHO05D007506 1.7e-122 443.4 362 61.3
Psat2g042920 Pisum sativum HOM05D006076 ORTHO05D007506 3.0e-122 442.6 344 60.2
Lsat_1_v5_gn_3_67061 Lactuca sativa HOM05D006076 ORTHO05D007506 3.9e-122 442.2 334 63.5
Manes.02G080800 Manihot esculenta HOM05D006076 ORTHO05D007506 1.1e-121 440.7 351 60.1
CANSAT11G2533 Cannabis sativa HOM05D006076 ORTHO05D007506 1.3e-120 437.2 360 58.3
Medtr5g076920 Medicago truncatula HOM05D006076 ORTHO05D007506 3.6e-120 435.6 354 58.5
HanXRQChr16g0532291 Helianthus annuus HOM05D006076 ORTHO05D007506 8.1e-120 434.5 337 61.7
Hma1.2p1_0034F.1_g021380 Hydrangea macrophylla HOM05D006076 ORTHO05D007506 2.4e-119 433.0 359 59.1
MSTRG.15638 Avicennia marina HOM05D006076 ORTHO05D007506 6.9e-119 431.4 351 59.3
Solyc02g036380.3 Solanum lycopersicum HOM05D006076 ORTHO05D007506 1.2e-118 430.6 403 53.3
unitig_0.g2639 Utricularia gibba HOM05D006076 ORTHO05D007506 1.2e-118 430.6 354 58.8
AUR62004772 Chenopodium quinoa HOM05D006076 ORTHO05D007506 7.6e-118 427.9 350 59.7
Cfa019426 Carpinus fangiana HOM05D006076 ORTHO05D007506 1.3e-117 427.2 318 63.5
Sc09g0004490 Simmondsia chinensis HOM05D006076 ORTHO05D007506 1.3e-117 427.2 356 56.5
Migut.K00743 Erythranthe guttata HOM05D006076 ORTHO05D007506 2.9e-117 426.0 342 61.7
MELO3C019565.2 Cucumis melo HOM05D006076 ORTHO05D007506 3.8e-117 425.6 349 59.6
SalBow5G0086 Salvia bowleyana HOM05D006076 ORTHO05D007506 4.9e-117 425.2 354 59.9
SalBow5G5467 Salvia bowleyana HOM05D006076 ORTHO05D007506 4.9e-117 425.2 354 59.9
ClCG05G010470 Citrullus lanatus HOM05D006076 ORTHO05D007506 3.2e-116 422.5 355 58.3
Gorai.007G188600 Gossypium raimondii HOM05D006076 ORTHO05D007506 5.5e-116 421.8 433 50.6
PSO782G3474 Papaver somniferum HOM05D006076 ORTHO05D007506 7.1e-116 421.4 370 57.0
RcHm_v2.0_Chr2g0106631 Rosa chinensis HOM05D006076 ORTHO05D007506 2.1e-115 419.9 361 57.1
EL10Ac4g08929 Beta vulgaris HOM05D006076 ORTHO05D007506 2.3e-114 416.4 355 56.1
PSO063G3081 Papaver somniferum HOM05D006076 ORTHO05D007506 5.1e-114 415.2 370 56.5
CsaV3_3G018020 Cucumis sativus L. HOM05D006076 ORTHO05D007506 2.5e-113 412.9 353 59.5
Aqoxy3G04116 Aquilegia oxysepala HOM05D006076 ORTHO05D007506 9.6e-113 411.0 370 55.9
CAN.G123.2 Capsicum annuum HOM05D006076 ORTHO05D007506 9.6e-113 411.0 340 58.5
Oeu012318.2 Olea europaea HOM05D006076 ORTHO05D007506 2.8e-112 409.5 428 50.0
Lj4A252G57 Lonicera japonica HOM05D006076 ORTHO05D007506 6.2e-112 408.3 321 63.2
vmacro20467 Vaccinium macrocarpon HOM05D006076 ORTHO05D007506 2.9e-109 399.4 484 45.9
Duzib138G0191 Durio zibethinus HOM05D006076 ORTHO05D007506 7.1e-108 394.8 359 55.2
Solyc06g043140.4 Solanum lycopersicum HOM05D006076 ORTHO05D007506 1.0e-106 391.0 352 55.1
CDE04G2995 Ceratophyllum demersum HOM05D006076 ORTHO05D007506 3.0e-106 389.4 341 55.1
Os02g0117800 Oryza sativa ssp. japonica HOM05D006076 ORTHO05D007506 1.6e-104 383.6 364 51.9
Zm00001eb230080 Zea mays HOM05D006076 ORTHO05D007506 3.1e-103 379.4 358 50.3
Atru.chr1.2153 Acer truncatum HOM05D006076 ORTHO05D007506 1.2e-102 377.5 247 69.6
Gohir.A11G169800 Gossypium hirsutum HOM05D006076 ORTHO05D007506 5.0e-101 372.1 359 53.5
RcHm_v2.0_Chr5g0080521 Rosa chinensis HOM05D006076 ORTHO05D007506 5.0e-101 372.1 302 58.3
ATR0807G042 Amborella trichopoda HOM05D006076 ORTHO05D007506 6.5e-101 371.7 362 54.1
ECA246G5189 Erigeron canadensis HOM05D006076 ORTHO05D000091 7.2e-100 368.2 315 57.1
SEGI_25199 Sequoiadendron giganteum HOM05D006076 ORTHO05D007506 2.3e-98 363.2 384 47.7
Sed0003951 Sechium edule HOM05D006076 ORTHO05D007506 8.7e-98 361.3 357 53.5
Peaxi162Scf00294g00628 Petunia axillaris HOM05D006076 ORTHO05D007506 6.5e-93 345.1 352 52.0
Hund22204 Selenicereus undatus HOM05D006076 ORTHO05D007506 1.8e-90 337.0 348 49.4
Ah.05g177670 Amaranthus hybridus HOM05D006076 ORTHO05D007506 6.7e-90 335.1 317 53.0
Actinidia40417 Actinidia chinensis HOM05D006076 ORTHO05D007506 6.3e-88 328.6 247 64.4
Nn4g24719 Nelumbo nucifera HOM05D006076 ORTHO05D007506 3.8e-85 319.3 294 56.5
Mapoly0019s0054 Marchantia polymorpha HOM05D006076 ORTHO05D007506 3.2e-84 316.2 421 39.4
Prupe.1G579800 Prunus persica HOM05D006076 ORTHO05D007506 9.4e-84 314.7 209 69.9
AUR62037480 Chenopodium quinoa HOM05D006076 ORTHO05D007506 5.3e-79 298.9 208 65.4
SMO116G0154 Selaginella moellendorffii HOM05D006076 ORTHO05D007506 2.9e-77 293.1 343 43.1
MBI06_g30602_MAGBIO Magnolia biondii HOM05D006076 ORTHO05D007506 3.8e-77 292.7 285 50.9
AagrBONN_evm.TU.Sc2ySwM_344.1639 Anthoceros agrestis HOM05D006076 ORTHO05D007506 2.5e-76 290.0 420 38.3
Cpa.g.sc178.26 Carica papaya HOM05D006076 ORTHO05D007506 6.1e-75 285.4 158 79.1
Pp3c4_11110 Physcomitrium patens HOM05D006076 ORTHO05D007506 2.0e-73 280.4 378 39.2
BcaNung00408 Brassica carinata HOM05D006076 ORTHO05D007506 1.2e-67 261.2 186 76.3
Haze_08537 Corylus avellana HOM05D006076 ORTHO05D007506 3.0e-66 256.5 345 42.3
QL04p075308 Quercus lobata HOM05D006076 ORTHO05D007506 3.8e-61 239.6 133 78.2
TAR629G0059 Trochodendron aralioides HOM05D006076 ORTHO05D007506 3.6e-59 233.0 131 74.0
QL04p075158 Quercus lobata HOM05D006076 ORTHO05D007506 2.3e-58 230.3 226 53.5
HPP92_002577 Vanilla planifolia HOM05D006076 ORTHO05D007506 3.3e-52 209.9 255 43.9
HPP92_002578 Vanilla planifolia HOM05D006076 ORTHO05D007871 3.3e-52 209.9 255 43.9
HanXRQChr16g0508921 Helianthus annuus HOM05D006076 ORTHO05D007506 4.0e-42 176.4 181 50.8
HanXRQChr02g0046461 Helianthus annuus HOM05D006076 ORTHO05D007506 1.2e-41 174.9 182 50.0
CBR_g50474 Chara braunii HOM05D001161 ORTHO05D000497 6.6e-37 159.1 123 52.8
QL04p043726 Quercus lobata HOM05D000176 ORTHO05D007506 6.6e-37 159.1 93 76.3
Cpa.g.sc178.27 Carica papaya HOM05D006076 ORTHO05D007506 8.6e-37 158.7 152 53.3
QL04p075322 Quercus lobata HOM05D006076 ORTHO05D007506 4.0e-26 123.2 76 71.1
Aqoxy531s001 Aquilegia oxysepala HOM05D006076 ORTHO05D007506 2.5e-20 104.0 133 43.6
Cre14.g630907 Chlamydomonas reinhardtii HOM05D006076 ORTHO05D007506 7.3e-20 102.4 191 34.6
QL04p075364 Quercus lobata HOM05D000397 ORTHO05D007506 2.6e-17 94.0 90 50.0
AUR62037479 Chenopodium quinoa HOM05D006076 ORTHO05D007506 4.2e-15 86.7 118 40.7
Actinidia40416 Actinidia chinensis HOM05D006076 ORTHO05D007506 8.4e-08 62.4 102 38.2


User provided reference genes

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