Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G26410 Arabidopsis lyrata HOM05D005508 ORTHO05D006882 1.7e-249 865.5 434 100.0
AT5G15550 Arabidopsis thaliana HOM05D005508 ORTHO05D006882 4.8e-244 847.4 434 97.5
Carub.0006s1373 Capsella rubella HOM05D005508 ORTHO05D006882 4.8e-236 820.8 434 93.5
CARHR197750 Cardamine hirsuta HOM05D005508 ORTHO05D006882 1.2e-223 779.6 434 88.9
THA.LOC104820997 Tarenaya hassleriana HOM05D005508 ORTHO05D006882 8.5e-217 756.9 429 86.2
Thhalv10013619m.g Eutrema salsugineum HOM05D005508 ORTHO05D006882 8.8e-214 746.9 432 85.6
Sp6g28530 Schrenkiella parvula HOM05D005508 ORTHO05D006882 1.4e-206 723.0 434 84.1
BcaC03g18558 Brassica carinata HOM05D005508 ORTHO05D006882 3.9e-206 721.5 434 83.4
Aa31LG3G15780 Aethionema arabicum HOM05D005508 ORTHO05D006882 6.3e-204 714.1 434 78.6
BcaB01g05044 Brassica carinata HOM05D005508 ORTHO05D006882 5.3e-203 711.1 432 81.5
Cpa.g.sc14.169 Carica papaya HOM05D005508 ORTHO05D006882 1.6e-194 682.9 427 77.0
CANSAT64G1484 Cannabis sativa HOM05D005508 ORTHO05D006882 4.2e-192 674.9 433 73.2
Ciclev10011739m.g Citrus clementina HOM05D005508 ORTHO05D006882 3.6e-191 671.8 429 73.7
Gohir.A09G009900 Gossypium hirsutum HOM05D005508 ORTHO05D006882 6.1e-191 671.0 437 72.5
Gorai.006G010700 Gossypium raimondii HOM05D005508 ORTHO05D006882 2.3e-190 669.1 435 72.2
Thecc.04G094900 Theobroma cacao HOM05D005508 ORTHO05D006882 2.3e-190 669.1 435 74.0
GSVIVG01032921001 Vitis vinifera HOM05D005508 ORTHO05D006882 3.0e-190 668.7 437 73.2
Gohir.D09G009000 Gossypium hirsutum HOM05D005508 ORTHO05D006882 4.0e-190 668.3 435 72.0
Prupe.3G255400 Prunus persica HOM05D005508 ORTHO05D006882 4.0e-190 668.3 434 71.9
Sed0021649 Sechium edule HOM05D005508 ORTHO05D006882 3.4e-189 665.2 436 71.6
COL.COLO4_07024 Corchorus olitorius HOM05D005508 ORTHO05D006882 1.7e-188 662.9 431 73.3
CiPaw.04G056000 Carya illinoinensis HOM05D005508 ORTHO05D006882 2.2e-188 662.5 434 71.4
Eucgr.I02026 Eucalyptus grandis HOM05D005508 ORTHO05D006882 2.2e-188 662.5 427 73.8
Potri.017G093300 Populus trichocarpa HOM05D005508 ORTHO05D006882 2.4e-187 659.1 432 72.0
PGR083G1795 Punica granatum HOM05D005508 ORTHO05D006882 9.1e-187 657.1 436 71.8
QL10p049508 Quercus lobata HOM05D005508 ORTHO05D006882 2.3e-185 652.5 435 69.9
Sabra17G0082300 Salix brachista HOM05D005508 ORTHO05D006882 2.3e-185 652.5 432 72.0
TAR371G0059 Trochodendron aralioides HOM05D005508 ORTHO05D006882 2.3e-185 652.5 437 70.0
MELO3C008857.2 Cucumis melo HOM05D005508 ORTHO05D006882 5.0e-185 651.4 434 71.0
Rhsim10G0042800 Rhododendron simsii HOM05D005508 ORTHO05D006882 1.9e-184 649.4 436 70.4
Manes.02G054600 Manihot esculenta HOM05D005508 ORTHO05D006882 4.2e-184 648.3 434 69.6
CsaV3_4G011930 Cucumis sativus L. HOM05D005508 ORTHO05D006882 5.5e-184 647.9 432 70.6
Atru.chr8.461 Acer truncatum HOM05D005508 ORTHO05D006882 7.2e-184 647.5 452 68.8
Sabra04G0069200 Salix brachista HOM05D005508 ORTHO05D006882 2.1e-183 646.0 444 69.4
Peaxi162Scf00166g00526 Petunia axillaris HOM05D005508 ORTHO05D006882 6.8e-182 641.0 435 71.0
VMungo0464G0521 Vigna mungo HOM05D005508 ORTHO05D006882 6.8e-182 641.0 427 71.0
CSS0005994 Camellia sinensis var. sinensis HOM05D005508 ORTHO05D006882 2.6e-181 639.0 434 71.0
Lj4A336G6 Lonicera japonica HOM05D005508 ORTHO05D006882 3.4e-181 638.6 437 69.6
Phvul.004G035400 Phaseolus vulgaris HOM05D005508 ORTHO05D006882 3.4e-181 638.6 429 71.1
TWI32G0965 Tripterygium wilfordii HOM05D005508 ORTHO05D006882 7.5e-181 637.5 429 69.5
DCAR_011042 Daucus carota HOM05D005508 ORTHO05D006882 2.2e-180 636.0 442 67.4
Glyma.13G056900 Glycine max HOM05D005508 ORTHO05D006882 4.9e-180 634.8 429 70.9
Glyma.19G029400 Glycine max HOM05D005508 ORTHO05D006882 4.9e-180 634.8 437 70.0
Glyma.05G027800 Glycine max HOM05D005508 ORTHO05D006882 8.3e-180 634.0 435 70.3
Glyma.01G086000 Glycine max HOM05D005508 ORTHO05D006882 1.1e-179 633.6 429 70.9
C02p07790 Brassica napus HOM05D005508 ORTHO05D006882 2.4e-179 632.5 362 85.9
Lj2g0000039 Lotus japonicus HOM05D005508 ORTHO05D006882 2.4e-179 632.5 426 70.9
Ca_04302_v3 Cicer arietinum L. HOM05D005508 ORTHO05D006882 3.1e-179 632.1 433 69.5
PGSC0003DMG400001639 Solanum tuberosum HOM05D005508 ORTHO05D006882 3.1e-179 632.1 430 70.7
CAN.G588.15 Capsicum annuum HOM05D005508 ORTHO05D006882 5.4e-179 631.3 438 69.4
arahy.Tifrunner.gnm1.ann1.6ZV37H Arachis hypogaea HOM05D005508 ORTHO05D006882 2.7e-178 629.0 427 70.7
TPR.G10015 Trifolium pratense HOM05D005508 ORTHO05D006882 4.5e-178 628.2 431 69.6
Nitab4.5_0003841g0090 Nicotiana tabacum HOM05D005508 ORTHO05D006882 7.8e-178 627.5 434 70.5
PGSC0003DMG400001452 Solanum tuberosum HOM05D005508 ORTHO05D006882 2.9e-177 625.5 438 69.4
Sopen01g053090 Solanum pennellii HOM05D005508 ORTHO05D006882 6.6e-177 624.4 430 69.5
Lalb_Chr02g0158951 Lupinus albus HOM05D005508 ORTHO05D006882 1.1e-176 623.6 429 69.0
Sopen02g033500 Solanum pennellii HOM05D005508 ORTHO05D006882 1.5e-176 623.2 438 69.2
ECA232G0694 Erigeron canadensis HOM05D005508 ORTHO05D006882 7.3e-176 620.9 435 68.0
arahy.Tifrunner.gnm1.ann1.LP06NS Arachis hypogaea HOM05D005508 ORTHO05D006882 9.5e-176 620.5 427 70.3
Cc07_g04170 Coffea canephora HOM05D005508 ORTHO05D006882 9.5e-176 620.5 434 66.6
PSO017G4331 Papaver somniferum HOM05D005508 ORTHO05D006882 6.1e-175 617.8 431 70.3
MSTRG.3354 Avicennia marina HOM05D005508 ORTHO05D006882 8.0e-175 617.5 441 66.4
Psat1g067800 Pisum sativum HOM05D005508 ORTHO05D006882 8.0e-175 617.5 429 67.8
PSO478G0705 Papaver somniferum HOM05D005508 ORTHO05D006882 3.1e-174 615.5 431 69.8
SalBow5G5336 Salvia bowleyana HOM05D005508 ORTHO05D006882 3.1e-174 615.5 436 66.7
Lsat_1_v5_gn_4_172421 Lactuca sativa HOM05D005508 ORTHO05D006882 9.8e-173 610.5 435 67.1
FvH4_6g46921 Fragaria vesca HOM05D005508 ORTHO05D006882 1.3e-172 610.1 434 67.1
Cfa007659 Carpinus fangiana HOM05D005508 ORTHO05D006882 1.7e-172 609.8 431 68.4
Nn4g23404 Nelumbo nucifera HOM05D005508 ORTHO05D006882 1.7e-172 609.8 408 70.6
Medtr7g099170 Medicago truncatula HOM05D005508 ORTHO05D006882 4.9e-172 608.2 429 67.6
MD09G1066100 Malus domestica HOM05D005508 ORTHO05D006882 8.3e-172 607.4 431 66.6
vmacro05630 Vaccinium macrocarpon HOM05D005508 ORTHO05D006882 8.3e-172 607.4 507 60.0
Nitab4.5_0017643g0010 Nicotiana tabacum HOM05D005508 ORTHO05D006882 4.1e-171 605.1 435 68.7
Solyc01g111030.2 Solanum lycopersicum HOM05D005508 ORTHO05D006882 5.4e-171 604.7 463 64.1
Dinv34945 Davidia involucrata HOM05D005508 ORTHO05D006882 6.0e-170 601.3 384 74.5
RcHm_v2.0_Chr2g0165901 Rosa chinensis HOM05D005508 ORTHO05D006882 1.5e-168 596.7 436 65.4
Haze_14435 Corylus avellana HOM05D005508 ORTHO05D006882 7.3e-168 594.3 433 66.3
Aqoxy3G02922 Aquilegia oxysepala HOM05D005508 ORTHO05D006882 2.6e-165 585.9 432 64.6
Solyc02g088780.4 Solanum lycopersicum HOM05D005508 ORTHO05D006882 4.4e-165 585.1 410 69.0
Migut.K01277 Erythranthe guttata HOM05D005508 ORTHO05D006882 4.9e-164 581.6 446 62.3
Hund05300 Selenicereus undatus HOM05D005508 ORTHO05D006882 9.2e-163 577.4 436 63.1
ClCG10G002410 Citrullus lanatus HOM05D005508 ORTHO05D006882 1.7e-161 573.2 452 62.8
CDE02G3404 Ceratophyllum demersum HOM05D005508 ORTHO05D006882 2.3e-161 572.8 432 64.1
Os07g0600400 Oryza sativa ssp. japonica HOM05D005508 ORTHO05D006882 6.6e-161 571.2 430 62.6
Oeu007065.1 Olea europaea HOM05D005508 ORTHO05D006882 8.6e-161 570.9 436 62.6
SGA_v2.0_scaffold148G36399 Striga asiatica HOM05D005508 ORTHO05D006882 1.5e-160 570.1 387 69.0
Lj4C332G1 Lonicera japonica HOM05D005508 ORTHO05D006882 1.9e-160 569.7 437 64.3
FAN14G5804 Fragaria x ananassa HOM05D005508 ORTHO05D010430 3.3e-160 568.9 423 65.2
AUR62014947 Chenopodium quinoa HOM05D005508 ORTHO05D006882 5.6e-160 568.2 432 61.8
AUR62029195 Chenopodium quinoa HOM05D005508 ORTHO05D006882 5.6e-160 568.2 432 61.6
FAN02G1587 Fragaria x ananassa HOM05D005508 ORTHO05D010430 2.3e-158 562.8 403 66.7
Zm00001eb326820 Zea mays HOM05D005508 ORTHO05D006882 6.8e-158 561.2 432 62.7
Dinv33825 Davidia involucrata HOM05D005508 ORTHO05D006882 3.4e-157 558.9 408 66.9
FAN05G2519 Fragaria x ananassa HOM05D005508 ORTHO05D010430 8.3e-156 554.3 434 62.4
HanXRQChr17g0551711 Helianthus annuus HOM05D005508 ORTHO05D006882 4.1e-155 552.0 392 68.6
SalBow1G5707 Salvia bowleyana HOM05D005508 ORTHO05D006882 4.6e-146 521.9 434 59.7
ATR0626G324 Amborella trichopoda HOM05D005508 ORTHO05D006882 1.0e-145 520.8 438 57.5
Ah.10g032240 Amaranthus hybridus HOM05D005508 ORTHO05D006882 7.3e-144 514.6 475 54.1
Lsat_1_v5_gn_5_138080 Lactuca sativa HOM05D005508 ORTHO05D006882 1.1e-142 510.8 408 62.7
SalBow1G3414 Salvia bowleyana HOM05D005508 ORTHO05D006882 6.9e-142 508.1 434 58.3
unitig_747.g21846 Utricularia gibba HOM05D005508 ORTHO05D006882 1.4e-139 500.4 414 57.5
EL10Ac2g03136 Beta vulgaris HOM05D005508 ORTHO05D006882 2.9e-132 476.1 451 53.4
Duzib187G1075 Durio zibethinus HOM05D005508 ORTHO05D006882 1.4e-131 473.8 437 56.1
MD17G1058800 Malus domestica HOM05D005508 ORTHO05D006882 1.6e-130 470.3 513 51.1
Sc10g0004650 Simmondsia chinensis HOM05D005508 ORTHO05D006882 1.9e-128 463.4 344 64.8
SHI01216 Sapria himalayana HOM05D005508 ORTHO05D006882 3.3e-128 462.6 431 54.5
SEGI_38227 Sequoiadendron giganteum HOM05D005508 ORTHO05D006882 1.8e-126 456.8 421 53.0
Pp3c23_13260 Physcomitrium patens HOM05D005508 ORTHO05D006882 2.0e-117 426.8 426 50.5
Mapoly0212s0005 Marchantia polymorpha HOM05D005508 ORTHO05D006882 3.9e-113 412.5 422 50.0
SMO172G0157 Selaginella moellendorffii HOM05D005508 ORTHO05D006882 2.6e-109 399.8 417 46.8
AagrBONN_evm.TU.Sc2ySwM_228.2684 Anthoceros agrestis HOM05D005508 ORTHO05D006882 4.1e-102 375.9 476 42.6
Cfa007661 Carpinus fangiana HOM05D005508 ORTHO05D006882 2.5e-91 340.1 261 65.9
TPR.G17839 Trifolium pratense HOM05D005508 ORTHO05D006882 1.1e-83 314.7 209 70.3
TAR622G1292 Trochodendron aralioides HOM05D005508 ORTHO05D006882 9.1e-78 295.0 256 55.9
CBR_g18642 Chara braunii HOM05D005508 ORTHO05D006882 1.3e-76 291.2 411 40.9
Cre17.g710100 Chlamydomonas reinhardtii HOM05D005508 ORTHO05D006882 1.3e-71 274.6 448 37.7
TPR.G17852 Trifolium pratense HOM05D005508 ORTHO05D006882 6.3e-71 272.3 214 64.0
HPP92_025853 Vanilla planifolia HOM05D005508 ORTHO05D006882 2.6e-64 250.4 258 52.3
Lj2g0016184 Lotus japonicus HOM05D005508 ORTHO05D006882 2.0e-61 240.7 301 49.8
MCO06G049 Micromonas commoda HOM05D005508 ORTHO05D006882 7.3e-59 232.3 448 31.2
TAR622G0687 Trochodendron aralioides HOM05D005508 ORTHO05D006882 2.3e-57 227.3 126 79.4
HPP92_025854 Vanilla planifolia HOM05D005508 ORTHO05D006882 3.1e-57 226.9 132 78.8
MBI16_g10277_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D030056 3.7e-55 219.9 162 63.0
PRCOL_00003700 Prasinoderma coloniale HOM05D005508 ORTHO05D006882 3.2e-54 216.9 450 32.7
C09p61540 Brassica napus HOM05D005508 ORTHO05D006882 2.1e-42 177.6 89 91.0
TWI34G1701 Tripterygium wilfordii HOM05D005508 ORTHO05D006882 2.4e-38 164.1 134 61.2
Hund12433 Selenicereus undatus HOM05D005508 ORTHO05D006882 1.7e-36 157.9 91 75.8
BcaC04g18902 Brassica carinata HOM05D000941 ORTHO05D000882 4.2e-30 136.7 85 80.0
BolC9t58917H Brassica oleracea HOM05D005508 ORTHO05D006882 4.2e-30 136.7 85 80.0
AUR62014946 Chenopodium quinoa HOM05D005508 ORTHO05D006882 9.3e-22 109.0 235 33.6
BraA08t32798Z Brassica rapa HOM05D005508 ORTHO05D006882 7.9e-21 105.9 220 36.4
A02p03100 Brassica napus HOM05D005508 ORTHO05D006882 1.3e-18 98.6 51 88.2
C03p08200 Brassica napus HOM05D005508 ORTHO05D006882 4.8e-18 96.7 51 84.3
Gohir.A13G117650 Gossypium hirsutum HOM05D005508 ORTHO05D006882 2.4e-14 84.3 53 69.8
Gohir.A10G166950 Gossypium hirsutum HOM05D005508 ORTHO05D006882 4.2e-14 83.6 51 72.5
Gohir.A05G306101 Gossypium hirsutum HOM05D005508 ORTHO05D007994 2.7e-13 80.9 53 67.9
SHI29392 Sapria himalayana HOM05D005508 ORTHO05D006882 1.0e-12 79.0 68 60.3
Gohir.A01G088200 Gossypium hirsutum HOM05D006474 ORTHO05D007994 2.3e-12 77.8 46 73.9
SHI29385 Sapria himalayana HOM05D005508 ORTHO05D006882 2.1e-10 71.2 91 41.8
SHI29386 Sapria himalayana HOM05D005508 ORTHO05D010077 1.4e-09 68.6 61 49.2
AagrBONN_evm.TU.Sc2ySwM_344.121 Anthoceros agrestis HOM05D000464 ORTHO05D006292 6.9e-09 66.2 354 24.6
Gohir.A01G167500 Gossypium hirsutum HOM05D001496 ORTHO05D047734 9.0e-09 65.9 39 74.4
Mapoly0043s0035 Marchantia polymorpha HOM05D006776 ORTHO05D007603 1.5e-08 65.1 139 30.9
HanXRQChr04g0100971 Helianthus annuus HOM05D000464 ORTHO05D006292 7.6e-08 62.8 323 21.1
MCO16G619 Micromonas commoda HOM05D000464 ORTHO05D006292 1.0e-07 62.4 171 28.1
FAN01G2983 Fragaria x ananassa HOM05D000526 ORTHO05D000956 2.9e-07 60.8 191 28.8
SGA_v2.0_scaffold113G31696 Striga asiatica HOM05D005508 ORTHO05D006882 1.4e-06 58.5 168 26.8
FAN03G3245 Fragaria x ananassa HOM05D000526 ORTHO05D000956 1.9e-06 58.2 189 27.5
vmacro19271 Vaccinium macrocarpon HOM05D000464 ORTHO05D006292 2.5e-06 57.8 155 29.0
vmacro23261 Vaccinium macrocarpon HOM05D000464 ORTHO05D006292 2.5e-06 57.8 155 29.0
AagrBONN_evm.TU.Sc2ySwM_228.2971 Anthoceros agrestis HOM05D006776 ORTHO05D007603 3.2e-06 57.4 136 31.6
FAN06G1781 Fragaria x ananassa HOM05D000526 ORTHO05D000956 3.2e-06 57.4 181 27.1
Actinidia28377 Actinidia chinensis HOM05D005323 ORTHO05D006820 5.5e-06 56.6 182 28.0
ECA232G1156 Erigeron canadensis HOM05D006776 ORTHO05D007603 7.1e-06 56.2 246 24.8
Atru.chr6.137 Acer truncatum HOM05D000526 ORTHO05D000956 9.3e-06 55.8 156 28.2
Sabra09G0088400 Salix brachista HOM05D003825 ORTHO05D004491 9.3e-06 55.8 173 28.3


User provided reference genes

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