Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G20270 Arabidopsis lyrata HOM05D006110 ORTHO05D007774 0.0e+00 1186.8 598 100.0
AT5G09860 Arabidopsis thaliana HOM05D006110 ORTHO05D007774 0.0e+00 1157.9 600 97.8
A02p00200 Brassica napus HOM05D006110 ORTHO05D007774 0.0e+00 1097.4 607 91.3
CARHR203490 Cardamine hirsuta HOM05D006110 ORTHO05D007774 0.0e+00 1097.4 589 94.6
Carub.0006s0829 Capsella rubella HOM05D006110 ORTHO05D007774 0.0e+00 1095.9 599 93.2
BraA02t05004Z Brassica rapa HOM05D006110 ORTHO05D007774 0.0e+00 1083.9 624 88.5
C02p04120 Brassica napus HOM05D006110 ORTHO05D007774 0.0e+00 1083.6 625 88.6
Sp6g33550 Schrenkiella parvula HOM05D006110 ORTHO05D007774 0.0e+00 1078.9 599 91.7
BolC2t06374H Brassica oleracea HOM05D006110 ORTHO05D007774 1.2e-311 1072.4 629 87.4
BcaB05g21524 Brassica carinata HOM05D006110 ORTHO05D007774 7.1e-307 1056.6 608 88.2
Thhalv10013059m.g Eutrema salsugineum HOM05D006110 ORTHO05D007774 9.3e-307 1056.2 598 90.6
BcaC03g13281 Brassica carinata HOM05D006110 ORTHO05D007774 1.2e-306 1055.8 610 88.4
Aa31LG1G21560 Aethionema arabicum HOM05D006110 ORTHO05D007774 3.0e-297 1024.6 616 85.6
THA.LOC104826748 Tarenaya hassleriana HOM05D006110 ORTHO05D007774 5.9e-293 1010.4 602 86.2
Manes.04G156400 Manihot esculenta HOM05D006110 ORTHO05D007774 1.6e-269 932.6 601 79.0
CiPaw.06G056300 Carya illinoinensis HOM05D006110 ORTHO05D007774 2.6e-264 915.2 601 76.5
QL04p021435 Quercus lobata HOM05D006110 ORTHO05D007774 2.6e-264 915.2 601 76.4
QL07p029279 Quercus lobata HOM05D006110 ORTHO05D007774 2.6e-264 915.2 601 76.4
Cfa010950 Carpinus fangiana HOM05D006110 ORTHO05D007774 4.4e-264 914.4 600 76.3
Atru.chr12.1309 Acer truncatum HOM05D006110 ORTHO05D007774 4.1e-262 907.9 597 78.1
Duzib106G1787 Durio zibethinus HOM05D006110 ORTHO05D007774 3.5e-261 904.8 613 76.3
GSVIVG01036611001 Vitis vinifera HOM05D006110 ORTHO05D007774 4.5e-261 904.4 594 76.3
GSVIVG01036631001 Vitis vinifera HOM05D006110 ORTHO05D007774 5.9e-261 904.0 594 76.3
COL.COLO4_06638 Corchorus olitorius HOM05D006110 ORTHO05D007774 2.9e-260 901.7 605 76.2
Potri.001G031700 Populus trichocarpa HOM05D006110 ORTHO05D007774 2.5e-259 898.7 587 78.0
Gohir.A05G399300 Gossypium hirsutum HOM05D006110 ORTHO05D007774 9.4e-259 896.7 603 76.3
Ciclev10000631m.g Citrus clementina HOM05D006110 ORTHO05D007774 1.2e-258 896.3 587 77.7
Gorai.012G019300 Gossypium raimondii HOM05D006110 ORTHO05D007774 2.1e-258 895.6 603 76.1
Prupe.7G006200 Prunus persica HOM05D006110 ORTHO05D007774 2.3e-257 892.1 609 75.5
CsaV3_5G023770 Cucumis sativus L. HOM05D006110 ORTHO05D007774 3.0e-257 891.7 602 74.3
Eucgr.E03954 Eucalyptus grandis HOM05D006110 ORTHO05D007774 3.0e-257 891.7 601 75.5
Sed0024249 Sechium edule HOM05D006110 ORTHO05D007774 5.2e-257 891.0 601 74.0
Dinv11233 Davidia involucrata HOM05D006110 ORTHO05D007774 2.0e-256 889.0 586 76.8
Potri.003G194000 Populus trichocarpa HOM05D006110 ORTHO05D007774 2.6e-256 888.6 587 77.0
MELO3C022813.2 Cucumis melo HOM05D006110 ORTHO05D007774 7.5e-256 887.1 602 74.1
MSTRG.16978 Avicennia marina HOM05D006110 ORTHO05D007774 4.9e-255 884.4 602 74.6
CANSAT56G0825 Cannabis sativa HOM05D006110 ORTHO05D007774 2.4e-254 882.1 609 73.9
VMungo1080G0231 Vigna mungo HOM05D006110 ORTHO05D007774 1.2e-253 879.8 598 74.6
EL10Ac7g17197 Beta vulgaris HOM05D006110 ORTHO05D007774 2.7e-253 878.6 601 74.2
FAN03G2625 Fragaria x ananassa HOM05D006110 ORTHO05D007774 2.7e-253 878.6 598 74.4
Glyma.04G133800 Glycine max HOM05D006110 ORTHO05D007774 2.7e-253 878.6 598 74.2
RcHm_v2.0_Chr1g0327151 Rosa chinensis HOM05D006110 ORTHO05D007774 4.5e-253 877.9 606 73.4
FvH4_7g03810 Fragaria vesca HOM05D006110 ORTHO05D007774 5.9e-253 877.5 587 75.8
TPR.G7074 Trifolium pratense HOM05D006110 ORTHO05D007774 1.0e-252 876.7 594 74.6
Gohir.D04G016600 Gossypium hirsutum HOM05D006110 ORTHO05D007774 1.9e-251 872.5 603 74.8
Actinidia07968 Actinidia chinensis HOM05D006110 ORTHO05D007774 2.5e-251 872.1 524 81.7
Phvul.005G004500 Phaseolus vulgaris HOM05D006110 ORTHO05D007774 3.3e-251 871.7 583 75.5
arahy.Tifrunner.gnm1.ann1.P4BN3A Arachis hypogaea HOM05D006110 ORTHO05D007774 9.5e-251 870.2 598 73.7
arahy.Tifrunner.gnm1.ann1.Y0U2QZ Arachis hypogaea HOM05D006110 ORTHO05D007774 6.1e-250 867.5 598 73.6
FAN10G4343 Fragaria x ananassa HOM05D006110 ORTHO05D007774 3.0e-249 865.1 593 74.5
Lj3g0023685 Lotus japonicus HOM05D006110 ORTHO05D007774 8.9e-249 863.6 594 73.1
CAN.G134.27 Capsicum annuum HOM05D006110 ORTHO05D007774 1.2e-248 863.2 586 75.3
Rhsim07G0069200 Rhododendron simsii HOM05D006110 ORTHO05D007774 2.0e-248 862.4 634 70.5
Haze_02994 Corylus avellana HOM05D006110 ORTHO05D007774 3.4e-248 861.7 600 72.5
MD14G1003800 Malus domestica HOM05D006110 ORTHO05D007774 5.7e-248 860.9 596 74.7
Solyc01g096600.4 Solanum lycopersicum HOM05D006110 ORTHO05D007774 7.5e-248 860.5 587 74.6
Sopen01g040330 Solanum pennellii HOM05D006110 ORTHO05D007774 2.2e-247 859.0 592 74.2
FAN06G2813 Fragaria x ananassa HOM05D006110 ORTHO05D007774 6.4e-247 857.4 612 72.5
Sc17g0003940 Simmondsia chinensis HOM05D006110 ORTHO05D007774 8.3e-247 857.1 524 80.9
Psat5g221960 Pisum sativum HOM05D006110 ORTHO05D007774 4.1e-246 854.7 595 72.4
HanXRQChr02g0048711 Helianthus annuus HOM05D006110 ORTHO05D007774 7.0e-246 854.0 593 73.0
Peaxi162Scf00220g00411 Petunia axillaris HOM05D006110 ORTHO05D007774 7.0e-246 854.0 601 71.9
ECA233G5267 Erigeron canadensis HOM05D006110 ORTHO05D007774 5.0e-244 847.8 601 71.4
Lsat_1_v5_gn_6_13001 Lactuca sativa HOM05D006110 ORTHO05D007774 3.3e-243 845.1 533 77.9
TAR625G0603 Trochodendron aralioides HOM05D006110 ORTHO05D007774 2.1e-242 842.4 585 73.8
CSS0009585 Camellia sinensis var. sinensis HOM05D006110 ORTHO05D007774 4.7e-242 841.3 596 73.5
Lalb_Chr20g0109671 Lupinus albus HOM05D006110 ORTHO05D007774 1.4e-241 839.7 600 71.8
Migut.B01193 Erythranthe guttata HOM05D006110 ORTHO05D007774 1.2e-240 836.6 539 76.8
Lalb_Chr20g0109811 Lupinus albus HOM05D006110 ORTHO05D007774 1.5e-240 836.3 600 71.7
Aqoxy3G04239 Aquilegia oxysepala HOM05D006110 ORTHO05D007774 4.3e-235 818.1 580 72.4
MBI03_g05118_MAGBIO Magnolia biondii HOM05D006110 ORTHO05D007774 5.6e-235 817.8 589 71.1
PSO782G1399 Papaver somniferum HOM05D006110 ORTHO05D007774 2.1e-234 815.8 586 71.8
Nn3g19142 Nelumbo nucifera HOM05D006110 ORTHO05D007774 4.7e-234 814.7 512 77.9
PGR031G3177 Punica granatum HOM05D006110 ORTHO05D007774 1.1e-233 813.5 569 73.5
PSO063G0799 Papaver somniferum HOM05D006110 ORTHO05D007774 5.2e-233 811.2 586 71.3
Nn8g38623 Nelumbo nucifera HOM05D006110 ORTHO05D007774 9.8e-232 807.0 606 70.1
Sabra01G0022800 Salix brachista HOM05D006110 ORTHO05D007774 1.7e-231 806.2 773 58.6
COL.COLO4_19610 Corchorus olitorius HOM05D006110 ORTHO05D007774 3.7e-231 805.1 632 68.0
ATR0618G428 Amborella trichopoda HOM05D006110 ORTHO05D007774 5.4e-230 801.2 591 70.6
vmacro13769 Vaccinium macrocarpon HOM05D006110 ORTHO05D007774 1.9e-227 792.7 683 63.1
Os03g0110400 Oryza sativa ssp. japonica HOM05D006110 ORTHO05D007774 1.9e-222 776.2 592 67.4
Zm00001eb000780 Zea mays HOM05D006110 ORTHO05D007774 1.9e-219 766.1 573 67.9
CDE05G1199 Ceratophyllum demersum HOM05D006110 ORTHO05D007774 7.3e-219 764.2 557 69.8
Ah.08g212940 Amaranthus hybridus HOM05D006110 ORTHO05D007774 3.6e-218 761.9 601 66.7
Nitab4.5_0002838g0090 Nicotiana tabacum HOM05D006110 ORTHO05D007774 1.3e-215 753.4 520 73.5
SalBow5G1256 Salvia bowleyana HOM05D006110 ORTHO05D007774 1.4e-214 750.0 616 65.3
Oeu014626.1 Olea europaea HOM05D006110 ORTHO05D007774 4.3e-211 738.4 494 75.3
SGA_v2.0_scaffold342G49409 Striga asiatica HOM05D006110 ORTHO05D007774 3.2e-206 722.2 653 61.3
SMO134G0202 Selaginella moellendorffii HOM05D006110 ORTHO05D007774 3.3e-203 712.2 525 67.4
unitig_26.g9755 Utricularia gibba HOM05D006110 ORTHO05D007774 2.8e-202 709.1 574 64.5
AUR62033702 Chenopodium quinoa HOM05D006110 ORTHO05D007774 6.2e-202 708.0 732 55.1
Mapoly0007s0076 Marchantia polymorpha HOM05D006110 ORTHO05D007774 1.1e-201 707.2 604 60.6
AagrBONN_evm.TU.Sc2ySwM_228.3473 Anthoceros agrestis HOM05D006110 ORTHO05D007774 6.0e-197 691.4 582 62.7
Thecc.10G142600 Theobroma cacao HOM05D006110 ORTHO05D007774 1.8e-196 689.9 451 77.6
AUR62036785 Chenopodium quinoa HOM05D006110 ORTHO05D007774 4.0e-193 678.7 601 62.1
Pp3c2_4660 Physcomitrium patens HOM05D006110 ORTHO05D007774 2.6e-192 676.0 562 62.5
AagrBONN_evm.TU.Sc2ySwM_228.3474 Anthoceros agrestis HOM05D006110 ORTHO05D007774 2.2e-191 672.9 561 63.8
Cc00_g06110 Coffea canephora HOM05D006110 ORTHO05D007774 3.6e-181 639.0 442 72.9
ClCG05G014210 Citrullus lanatus HOM05D006110 ORTHO05D007774 6.3e-178 628.2 452 70.6
TPR.G1403 Trifolium pratense HOM05D006110 ORTHO05D007774 8.2e-154 548.1 389 71.0
DCAR_022366 Daucus carota HOM05D006110 ORTHO05D007774 3.7e-138 496.1 377 66.6
HPP92_005051 Vanilla planifolia HOM05D006110 ORTHO05D007774 1.4e-129 467.6 324 72.5
Cpa.g.sc51.83 Carica papaya HOM05D006110 ORTHO05D007774 1.2e-128 464.5 270 81.1
Lj9C658T8 Lonicera japonica HOM05D006110 ORTHO05D007774 3.9e-127 459.5 288 81.2
SEGI_32708 Sequoiadendron giganteum HOM05D006110 ORTHO05D007774 1.5e-123 447.6 310 72.6
CBR_g45491 Chara braunii HOM05D006110 ORTHO05D007774 4.4e-123 446.0 564 45.7
Nitab4.5_0004168g0080 Nicotiana tabacum HOM05D006110 ORTHO05D007774 1.0e-103 381.7 386 57.0
Hund24435 Selenicereus undatus HOM05D006110 ORTHO05D007774 2.4e-92 344.0 259 69.5
Hund12548 Selenicereus undatus HOM05D006110 ORTHO05D007774 6.9e-92 342.4 246 71.5
Sed0017067 Sechium edule HOM05D006110 ORTHO05D007774 1.3e-90 338.2 188 86.2
HPP92_005075 Vanilla planifolia HOM05D006110 ORTHO05D007774 1.2e-83 315.1 210 71.4
PRCOL_00001172 Prasinoderma coloniale HOM05D006110 ORTHO05D007774 1.3e-74 285.0 446 37.7
Lj9A658T58 Lonicera japonica HOM05D006110 ORTHO05D007774 1.1e-65 255.4 217 63.6
CANSAT01G0073 Cannabis sativa HOM05D006110 ORTHO05D007774 4.3e-62 243.4 175 71.4
CDE05G0354 Ceratophyllum demersum HOM05D006110 ORTHO05D007774 2.0e-51 208.0 360 38.6
CANSAT01G1515 Cannabis sativa HOM05D006110 ORTHO05D007774 2.9e-50 204.1 108 84.3
Cc00_g06120 Coffea canephora HOM05D006110 ORTHO05D007774 1.4e-49 201.8 134 75.4
CDE05G3545 Ceratophyllum demersum HOM05D006110 ORTHO05D007774 1.2e-43 182.2 138 67.4
SEGI_24206 Sequoiadendron giganteum HOM05D006110 ORTHO05D007774 4.5e-43 180.3 174 60.3
SEGI_05467 Sequoiadendron giganteum HOM05D006110 ORTHO05D007774 2.4e-36 157.9 103 68.0
Oeu014625.1 Olea europaea HOM05D006110 ORTHO05D007774 7.5e-30 136.3 134 61.2
ClCG05G014240 Citrullus lanatus HOM05D006110 ORTHO05D007774 2.3e-26 124.8 181 45.9
Cre16.g695300 Chlamydomonas reinhardtii HOM05D006110 ORTHO05D007774 7.2e-25 119.8 267 31.8
Lj9C658T10 Lonicera japonica HOM05D006110 ORTHO05D007774 2.1e-24 118.2 66 75.8
Actinidia06221 Actinidia chinensis HOM05D006110 ORTHO05D007774 2.8e-21 107.8 165 46.7
QL04p021235 Quercus lobata HOM05D006110 ORTHO05D011410 1.2e-06 59.3 46 73.9


User provided reference genes

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