Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G19260 Arabidopsis lyrata HOM05D004199 ORTHO05D005905 0.0e+00 1550.8 917 100.0
AT5G08550 Arabidopsis thaliana HOM05D004199 ORTHO05D005905 0.0e+00 1416.7 917 89.4
Carub.0006s0751 Capsella rubella HOM05D004199 ORTHO05D005905 0.0e+00 1416.4 921 91.6
CARHR204430 Cardamine hirsuta HOM05D004199 ORTHO05D005905 0.0e+00 1257.7 923 75.4
Sp6g34340 Schrenkiella parvula HOM05D004199 ORTHO05D005905 0.0e+00 1224.9 923 81.6
Thhalv10012615m.g Eutrema salsugineum HOM05D004199 ORTHO05D005905 0.0e+00 1219.5 920 79.6
A10p28170 Brassica napus HOM05D004199 ORTHO05D005905 0.0e+00 1205.3 922 77.8
BraA10t44866Z Brassica rapa HOM05D004199 ORTHO05D005905 0.0e+00 1205.3 922 77.8
C09p68380 Brassica napus HOM05D004199 ORTHO05D005905 0.0e+00 1195.3 923 77.2
Aa31LG3G17980 Aethionema arabicum HOM05D004199 ORTHO05D005905 0.0e+00 1194.5 927 72.7
BolC9t59585H Brassica oleracea HOM05D004199 ORTHO05D005905 0.0e+00 1191.8 925 77.6
BcaB08g37246 Brassica carinata HOM05D004199 ORTHO05D005905 0.0e+00 1186.0 930 74.7
C03p04430 Brassica napus HOM05D004199 ORTHO05D005905 0.0e+00 1169.5 920 79.9
BraA03t09739Z Brassica rapa HOM05D004199 ORTHO05D005905 0.0e+00 1169.1 919 76.7
BolC3t12974H Brassica oleracea HOM05D004199 ORTHO05D005905 0.0e+00 1156.4 920 79.5
A03p03960 Brassica napus HOM05D004199 ORTHO05D005905 0.0e+00 1147.5 920 72.2
BcaB01g05585 Brassica carinata HOM05D004199 ORTHO05D005905 0.0e+00 1109.4 924 72.4
THA.LOC104800384 Tarenaya hassleriana HOM05D004199 ORTHO05D005905 0.0e+00 1085.1 926 65.2
Eucgr.K00868 Eucalyptus grandis HOM05D004199 ORTHO05D005905 1.1e-229 800.8 958 52.3
MELO3C012214.2 Cucumis melo HOM05D004199 ORTHO05D005905 6.4e-222 775.0 963 49.8
Sed0023765 Sechium edule HOM05D004199 ORTHO05D005905 8.3e-222 774.6 952 49.8
Eucgr.G02350 Eucalyptus grandis HOM05D004199 ORTHO05D005905 1.1e-221 774.2 983 50.4
CsaV3_5G033970 Cucumis sativus L. HOM05D004199 ORTHO05D005905 3.2e-221 772.7 967 50.1
CSS0043668 Camellia sinensis var. sinensis HOM05D004199 ORTHO05D005905 3.5e-220 769.2 910 51.4
COL.COLO4_31201 Corchorus olitorius HOM05D004199 ORTHO05D005905 1.0e-219 767.7 940 50.4
Gorai.011G063300 Gossypium raimondii HOM05D004199 ORTHO05D005905 3.9e-219 765.8 944 50.5
Gohir.A10G057500 Gossypium hirsutum HOM05D004199 ORTHO05D005905 1.9e-218 763.5 947 50.3
Manes.04G160500 Manihot esculenta HOM05D004199 ORTHO05D005905 2.5e-218 763.1 892 52.0
CiPaw.16G003100 Carya illinoinensis HOM05D004199 ORTHO05D005905 4.7e-217 758.8 863 52.0
Gohir.D10G059300 Gossypium hirsutum HOM05D004199 ORTHO05D005905 4.7e-217 758.8 944 50.3
Cfa018630 Carpinus fangiana HOM05D004199 ORTHO05D005905 7.5e-215 751.5 955 49.7
ClCG05G023030 Citrullus lanatus HOM05D004199 ORTHO05D005905 1.3e-214 750.7 939 50.2
CANSAT56G2350 Cannabis sativa HOM05D004199 ORTHO05D005905 2.2e-214 750.0 926 50.6
Lj6A766T32 Lonicera japonica HOM05D004199 ORTHO05D005905 7.0e-213 745.0 896 50.4
AUR62044199 Chenopodium quinoa HOM05D004199 ORTHO05D005905 2.5e-210 736.5 931 50.4
MD13G1046700 Malus domestica HOM05D004199 ORTHO05D005905 6.2e-209 731.9 956 49.4
TWI53G1601 Tripterygium wilfordii HOM05D004199 ORTHO05D005905 8.1e-209 731.5 834 52.5
RcHm_v2.0_Chr4g0435851 Rosa chinensis HOM05D004199 ORTHO05D005905 1.1e-208 731.1 946 49.7
EL10Ac9g22638 Beta vulgaris HOM05D004199 ORTHO05D005905 1.2e-207 727.6 941 48.5
FAN07G1167 Fragaria x ananassa HOM05D004199 ORTHO05D005905 1.5e-207 727.2 950 49.4
Thecc.10G125100 Theobroma cacao HOM05D004199 ORTHO05D005905 2.9e-206 723.0 889 51.5
FAN12G0509 Fragaria x ananassa HOM05D004199 ORTHO05D005905 8.3e-206 721.5 944 48.5
Atru.chr6.1864_Atru.chr6.1865 Acer truncatum HOM05D004199 ORTHO05D005905 2.4e-205 719.9 851 52.1
Hma1.2p1_0399F.1_g144220 Hydrangea macrophylla HOM05D004199 ORTHO05D005905 4.1e-205 719.2 858 51.5
vmacro14411 Vaccinium macrocarpon HOM05D004199 ORTHO05D005905 5.4e-205 718.8 844 51.3
Ah.04g153070 Amaranthus hybridus HOM05D004199 ORTHO05D005905 9.2e-205 718.0 950 47.7
TAR623G0314 Trochodendron aralioides HOM05D004199 ORTHO05D005905 1.6e-204 717.2 864 49.9
Ciclev10014191m.g Citrus clementina HOM05D004199 ORTHO05D005905 7.8e-204 714.9 869 49.4
FvH4_4g28100 Fragaria vesca HOM05D004199 ORTHO05D005905 1.0e-203 714.5 949 48.5
MD16G1048400 Malus domestica HOM05D004199 ORTHO05D005905 1.3e-203 714.1 953 48.5
DCAR_030084 Daucus carota HOM05D004199 ORTHO05D005905 3.9e-203 712.6 880 49.9
FAN17G3109 Fragaria x ananassa HOM05D004199 ORTHO05D005905 3.9e-203 712.6 853 50.5
Cc11_g10620 Coffea canephora HOM05D004199 ORTHO05D005905 5.1e-203 712.2 929 49.7
FAN22G1977 Fragaria x ananassa HOM05D004199 ORTHO05D005905 2.1e-201 706.8 945 46.9
Potri.008G002600 Populus trichocarpa HOM05D004199 ORTHO05D005905 6.2e-201 705.3 898 49.7
MBI01_g12859_MAGBIO Magnolia biondii HOM05D004199 ORTHO05D005905 2.9e-198 696.4 859 49.7
Nn6g35106 Nelumbo nucifera HOM05D004199 ORTHO05D005905 2.4e-197 693.3 857 49.4
Hma1.2p1_2265F.1_g318400 Hydrangea macrophylla HOM05D004199 ORTHO05D005905 7.1e-197 691.8 858 50.6
Phvul.001G030200 Phaseolus vulgaris HOM05D004199 ORTHO05D005905 7.1e-197 691.8 935 48.6
Sabra08G0000600 Salix brachista HOM05D004199 ORTHO05D005905 1.2e-196 691.0 925 47.7
SGA_v2.0_scaffold14G06820 Striga asiatica HOM05D004199 ORTHO05D005905 1.0e-195 688.0 977 45.5
VMungo1383G0908 Vigna mungo HOM05D004199 ORTHO05D005905 2.3e-195 686.8 936 48.0
Glyma.07G155300 Glycine max HOM05D004199 ORTHO05D005905 3.0e-195 686.4 944 48.6
Psat2g189000 Pisum sativum HOM05D004199 ORTHO05D005905 3.3e-194 682.9 943 47.0
EL10Ac8g19592 Beta vulgaris HOM05D004199 ORTHO05D005905 5.6e-194 682.2 943 47.6
Haze_17439 Corylus avellana HOM05D004199 ORTHO05D005905 9.6e-194 681.4 955 47.2
CDE05G0525 Ceratophyllum demersum HOM05D004199 ORTHO05D005905 2.4e-192 676.8 938 47.5
Rhsim03G0238800 Rhododendron simsii HOM05D004199 ORTHO05D005905 2.4e-192 676.8 942 45.5
Dinv05796 Davidia involucrata HOM05D004199 ORTHO05D005905 1.2e-191 674.5 863 48.4
Lj3g0002767 Lotus japonicus HOM05D004199 ORTHO05D005905 1.3e-190 671.0 940 47.6
Medtr5g007520 Medicago truncatula HOM05D004199 ORTHO05D005905 1.3e-190 671.0 940 46.3
Glyma.07G227400 Glycine max HOM05D004199 ORTHO05D005905 1.4e-189 667.5 947 47.4
Ca_25946_v3 Cicer arietinum L. HOM05D004199 ORTHO05D005905 4.2e-189 666.0 952 47.9
ECA234G0057 Erigeron canadensis HOM05D004199 ORTHO05D005905 1.2e-188 664.5 926 46.2
Sc17g0004690 Simmondsia chinensis HOM05D004199 ORTHO05D005905 1.2e-188 664.5 889 48.7
ATR0665G261 Amborella trichopoda HOM05D004199 ORTHO05D005905 2.7e-188 663.3 967 46.0
Aqoxy2G01512 Aquilegia oxysepala HOM05D004199 ORTHO05D005905 6.0e-188 662.1 861 46.3
CAN.G184.89 Capsicum annuum HOM05D004199 ORTHO05D005905 1.0e-187 661.4 895 46.6
Glyma.20G028100 Glycine max HOM05D004199 ORTHO05D005905 3.9e-187 659.4 907 49.1
Peaxi162Scf00102g00927 Petunia axillaris HOM05D004199 ORTHO05D005905 8.7e-187 658.3 876 47.0
PSO339G4136 Papaver somniferum HOM05D004199 ORTHO05D005905 7.3e-186 655.2 855 48.5
Lalb_Chr10g0099721 Lupinus albus HOM05D004199 ORTHO05D005905 1.3e-185 654.4 865 48.7
PSO801G0529 Papaver somniferum HOM05D004199 ORTHO05D005905 6.2e-185 652.1 944 46.2
Sopen05g005660 Solanum pennellii HOM05D004199 ORTHO05D005905 8.1e-185 651.7 889 46.2
PGSC0003DMG400000826 Solanum tuberosum HOM05D004199 ORTHO05D005905 1.4e-184 651.0 864 46.6
Prupe.1G305200 Prunus persica HOM05D004199 ORTHO05D005905 6.9e-184 648.7 961 46.5
Duzib235G0865 Durio zibethinus HOM05D004199 ORTHO05D005905 2.2e-182 643.7 873 48.1
CDE01G0057 Ceratophyllum demersum HOM05D004199 ORTHO05D005905 4.2e-181 639.4 902 46.5
arahy.Tifrunner.gnm1.ann1.9AQU5H Arachis hypogaea HOM05D004199 ORTHO05D005905 1.0e-179 634.8 870 48.9
TPR.G37944 Trifolium pratense HOM05D004199 ORTHO05D005905 5.1e-179 632.5 775 49.9
Nitab4.5_0004122g0060 Nicotiana tabacum HOM05D004199 ORTHO05D005905 6.7e-179 632.1 1003 42.6
HPP92_022758 Vanilla planifolia HOM05D004199 ORTHO05D005905 4.3e-178 629.4 945 44.9
Hma1.2p1_0592F.1_g185323 Hydrangea macrophylla HOM05D004199 ORTHO05D005905 4.8e-177 625.9 793 50.4
HanXRQChr17g0568011 Helianthus annuus HOM05D004199 ORTHO05D005905 1.4e-176 624.4 806 46.9
Lsat_1_v5_gn_4_1641 Lactuca sativa HOM05D004199 ORTHO05D005905 1.4e-176 624.4 898 44.8
arahy.Tifrunner.gnm1.ann1.P5TZTU Arachis hypogaea HOM05D004199 ORTHO05D005905 6.9e-176 622.1 892 47.6
unitig_22.g6876 Utricularia gibba HOM05D004199 ORTHO05D005905 4.9e-174 615.9 983 41.8
Nitab4.5_0011513g0020 Nicotiana tabacum HOM05D004199 ORTHO05D005905 1.4e-173 614.4 988 42.2
Lalb_Chr04g0254951 Lupinus albus HOM05D004199 ORTHO05D005905 1.8e-171 607.4 941 45.2
SEGI_39962 Sequoiadendron giganteum HOM05D004199 ORTHO05D005905 2.5e-170 603.6 946 43.4
Migut.E00297 Erythranthe guttata HOM05D004199 ORTHO05D005905 2.4e-168 597.0 952 44.0
Solyc05g009850.4 Solanum lycopersicum HOM05D004199 ORTHO05D005905 3.1e-152 543.5 614 49.5
Aqoxy6G00799 Aquilegia oxysepala HOM05D004199 ORTHO05D005905 4.1e-152 543.1 830 40.8
Actinidia38395 Actinidia chinensis HOM05D004199 ORTHO05D005905 8.2e-145 518.8 717 46.7
Zm00001eb064800 Zea mays HOM05D004199 ORTHO05D005905 5.0e-142 509.6 984 38.0
Os03g0853700 Oryza sativa ssp. japonica HOM05D004199 ORTHO05D005905 3.2e-141 506.9 980 37.8
AagrBONN_evm.TU.Sc2ySwM_228.4147 Anthoceros agrestis HOM05D004199 ORTHO05D005905 9.1e-136 488.8 923 37.2
GSVIVG01011956001 Vitis vinifera HOM05D004199 ORTHO05D005905 2.8e-129 467.2 485 52.8
AagrBONN_evm.TU.Sc2ySwM_368.435 Anthoceros agrestis HOM05D004199 ORTHO05D005905 1.1e-128 465.3 923 36.6
Mapoly0131s0026 Marchantia polymorpha HOM05D004199 ORTHO05D005905 2.3e-123 447.6 897 37.2
Oeu041359.1 Olea europaea HOM05D004199 ORTHO05D005905 2.0e-122 444.5 477 51.6
AUR62042759 Chenopodium quinoa HOM05D004199 ORTHO05D005905 8.3e-121 439.1 482 50.6
Pp3c5_20240 Physcomitrium patens HOM05D004199 ORTHO05D005905 1.8e-120 438.0 1002 34.9
SMO259G0010 Selaginella moellendorffii HOM05D004199 ORTHO05D005905 5.0e-118 429.9 835 37.2
CARHR203800 Cardamine hirsuta HOM05D004199 ORTHO05D005905 2.4e-104 384.4 263 79.8
AT5G09210 Arabidopsis thaliana HOM05D004199 ORTHO05D005905 1.0e-102 379.0 267 76.0
Rhsim01G0212500 Rhododendron simsii HOM05D004199 ORTHO05D005905 4.0e-91 340.5 548 41.4
CBR_g46838 Chara braunii HOM05D004199 ORTHO05D005905 9.2e-88 329.3 555 37.7
Nitab4.5_0007631g0010 Nicotiana tabacum HOM05D004199 ORTHO05D005905 3.8e-73 280.8 482 38.6
Oeu041360.1 Olea europaea HOM05D004199 ORTHO05D005905 1.9e-64 251.9 483 40.8
GSVIVG01011955001 Vitis vinifera HOM05D004199 ORTHO05D005905 5.1e-62 243.8 369 45.3
QL01p046262 Quercus lobata HOM05D004199 ORTHO05D005905 1.1e-61 242.7 367 45.5
Cpa.g.sc221.8 Carica papaya HOM05D004199 ORTHO05D005905 5.8e-58 230.3 419 48.0
Zm00001eb177730 Zea mays HOM05D004199 ORTHO05D005905 6.4e-57 226.9 396 36.6
Zm00001eb381810 Zea mays HOM05D004199 ORTHO05D005905 2.3e-54 218.4 387 37.7
Actinidia13676 Actinidia chinensis HOM05D004199 ORTHO05D005905 1.5e-53 215.7 170 65.9
AUR62033048 Chenopodium quinoa HOM05D004199 ORTHO05D005905 2.5e-53 214.9 429 42.0
Glyma.18G205900 Glycine max HOM05D004199 ORTHO05D005905 3.3e-53 214.5 294 44.2
MCO14G506 Micromonas commoda HOM05D004199 ORTHO05D005905 5.6e-53 213.8 520 31.0
EL10Ac6g14565 Beta vulgaris HOM05D004199 ORTHO05D005905 4.9e-49 200.7 164 60.4
Cre06.g269350 Chlamydomonas reinhardtii HOM05D004199 ORTHO05D005905 3.0e-46 191.4 584 26.4
Zm00001eb323900 Zea mays HOM05D004199 ORTHO05D005905 1.5e-45 189.1 313 38.3
Actinidia13675 Actinidia chinensis HOM05D004199 ORTHO05D005905 9.0e-43 179.9 432 38.7
CARHR069330 Cardamine hirsuta HOM05D004199 ORTHO05D005905 2.7e-31 141.7 88 85.2
EL10Ac6g13882 Beta vulgaris HOM05D004199 ORTHO05D005905 2.0e-29 135.6 95 67.4
Thecc.06G064500 Theobroma cacao HOM05D004199 ORTHO05D005905 1.0e-22 113.2 77 74.0
Potri.006G020200 Populus trichocarpa HOM05D004199 ORTHO05D005905 7.0e-19 100.5 96 60.4
Potri.006G020400 Populus trichocarpa HOM05D004199 ORTHO05D005905 4.5e-18 97.8 96 59.4
AagrBONN_evm.TU.Sc2ySwM_368.450 Anthoceros agrestis HOM05D004199 ORTHO05D005905 2.9e-17 95.1 84 51.2
CARHR147400 Cardamine hirsuta HOM05D004199 ORTHO05D005905 8.5e-17 93.6 129 47.3
Cpa.g.sc221.6 Carica papaya HOM05D004199 ORTHO05D005905 6.8e-14 84.0 65 64.6
COL.COLO4_32069 Corchorus olitorius HOM05D004199 ORTHO05D025158 5.3e-11 74.3 90 47.8
COL.COLO4_28252 Corchorus olitorius HOM05D004199 ORTHO05D025158 9.1e-11 73.6 90 51.1
Nitab4.5_0000520g0050 Nicotiana tabacum HOM05D004199 ORTHO05D005905 1.6e-10 72.8 155 32.9
Aqoxy5G02943 Aquilegia oxysepala HOM05D004199 ORTHO05D077991 8.0e-07 60.5 40 60.0
COL.COLO4_08066 Corchorus olitorius HOM05D004199 ORTHO05D025158 8.0e-07 60.5 110 42.7
AagrBONN_evm.TU.Sc2ySwM_368.453 Anthoceros agrestis HOM05D030179 ORTHO05D026588 1.4e-06 59.7 49 46.9


User provided reference genes

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