Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G18680 Arabidopsis lyrata HOM05D004008 ORTHO05D005383 6.6e-213 743.8 383 100.0
AT5G08280 Arabidopsis thaliana HOM05D004008 ORTHO05D005383 2.0e-209 732.3 383 98.2
Carub.0006s0716 Capsella rubella HOM05D004008 ORTHO05D005383 3.2e-207 724.9 383 97.4
CARHR204850 Cardamine hirsuta HOM05D004008 ORTHO05D005383 8.0e-203 710.3 383 94.5
Thhalv10013814m.g Eutrema salsugineum HOM05D004008 ORTHO05D005383 4.4e-201 704.5 383 93.5
Sp6g34680 Schrenkiella parvula HOM05D004008 ORTHO05D005383 4.9e-200 701.0 383 93.7
A10p28400 Brassica napus HOM05D004008 ORTHO05D005383 2.0e-198 695.7 383 92.7
BraA10t44887Z Brassica rapa HOM05D004008 ORTHO05D005383 2.0e-198 695.7 383 92.7
C09p68660 Brassica napus HOM05D004008 ORTHO05D005383 3.0e-197 691.8 383 92.7
BolC9t59612H Brassica oleracea HOM05D004008 ORTHO05D005383 1.9e-196 689.1 383 92.4
Aa31LG3G18290 Aethionema arabicum HOM05D004008 ORTHO05D005383 2.5e-196 688.7 383 92.2
BraA02t04947Z Brassica rapa HOM05D004008 ORTHO05D005383 4.4e-193 677.9 384 90.9
C02p03470 Brassica napus HOM05D004008 ORTHO05D005383 3.7e-192 674.9 384 90.6
BolC2t06308H Brassica oleracea HOM05D004008 ORTHO05D005383 4.1e-191 671.4 384 89.8
BcaNung05097 Brassica carinata HOM05D004008 ORTHO05D005383 4.3e-188 661.4 386 89.4
C03p04200 Brassica napus HOM05D004008 ORTHO05D005383 4.3e-188 661.4 384 89.1
A03p03710 Brassica napus HOM05D004008 ORTHO05D005383 2.1e-187 659.1 385 89.1
BraA03t09719Z Brassica rapa HOM05D004008 ORTHO05D005383 2.1e-187 659.1 385 89.1
BcaB01g05618 Brassica carinata HOM05D004008 ORTHO05D005383 8.1e-187 657.1 384 88.8
BolC3t12952H Brassica oleracea HOM05D004008 ORTHO05D005383 8.1e-187 657.1 384 88.8
BcaB08g37268 Brassica carinata HOM05D004008 ORTHO05D005383 9.9e-185 650.2 383 88.0
THA.LOC104800860 Tarenaya hassleriana HOM05D004008 ORTHO05D005383 2.1e-179 632.5 381 84.0
BcaC03g13214 Brassica carinata HOM05D004008 ORTHO05D005383 2.2e-176 622.5 384 85.2
Cpa.g.sc43.43 Carica papaya HOM05D004008 ORTHO05D005383 3.6e-163 578.6 375 78.9
CANSAT78G1304 Cannabis sativa HOM05D004008 ORTHO05D005383 1.1e-159 567.0 386 78.2
Haze_11762 Corylus avellana HOM05D004008 ORTHO05D005383 2.7e-158 562.4 383 77.0
Prupe.1G348400 Prunus persica HOM05D004008 ORTHO05D005383 1.8e-157 559.7 374 77.0
Cfa008746 Carpinus fangiana HOM05D004008 ORTHO05D005383 8.7e-157 557.4 383 76.2
RcHm_v2.0_Chr4g0446801 Rosa chinensis HOM05D004008 ORTHO05D005383 1.1e-156 557.0 354 79.7
COL.COLO4_33043 Corchorus olitorius HOM05D004008 ORTHO05D005383 1.5e-156 556.6 395 75.4
MD16G1003400 Malus domestica HOM05D004008 ORTHO05D005383 1.9e-156 556.2 386 75.4
Eucgr.C00142 Eucalyptus grandis HOM05D004008 ORTHO05D005383 4.3e-156 555.1 384 76.0
Gohir.A03G165100 Gossypium hirsutum HOM05D004008 ORTHO05D005383 9.6e-156 553.9 357 78.7
Gohir.D02G188300 Gossypium hirsutum HOM05D004008 ORTHO05D005383 1.3e-155 553.5 378 75.9
Gorai.005G211000 Gossypium raimondii HOM05D004008 ORTHO05D005383 1.3e-155 553.5 378 75.9
Sed0006741 Sechium edule HOM05D004008 ORTHO05D005383 1.3e-155 553.5 360 78.6
MD13G1004100 Malus domestica HOM05D004008 ORTHO05D005383 3.7e-155 552.0 385 75.3
Manes.11G103000 Manihot esculenta HOM05D004008 ORTHO05D005383 1.1e-154 550.4 357 80.1
CsaV3_3G031800 Cucumis sativus L. HOM05D004008 ORTHO05D005383 1.4e-154 550.1 359 76.9
Duzib132G0865 Durio zibethinus HOM05D004008 ORTHO05D005383 1.8e-154 549.7 383 75.5
Thecc.02G158900 Theobroma cacao HOM05D004008 ORTHO05D005383 3.1e-154 548.9 380 75.8
Ciclev10031858m.g Citrus clementina HOM05D004008 ORTHO05D005383 6.9e-154 547.7 374 75.9
Potri.007G072500 Populus trichocarpa HOM05D004008 ORTHO05D005383 2.0e-153 546.2 381 75.6
PGR142G0362 Punica granatum HOM05D004008 ORTHO05D005383 2.0e-153 546.2 371 76.3
Migut.M01552 Erythranthe guttata HOM05D004008 ORTHO05D005383 3.4e-153 545.4 356 80.1
Gorai.012G134300 Gossypium raimondii HOM05D004008 ORTHO05D005383 7.6e-153 544.3 354 79.4
MSTRG.13067 Avicennia marina HOM05D004008 ORTHO05D005383 1.3e-152 543.5 382 74.6
Peaxi162Scf00452g00831 Petunia axillaris HOM05D004008 ORTHO05D005383 2.9e-152 542.3 361 76.5
VMungo1215G1012 Vigna mungo HOM05D004008 ORTHO05D005383 2.9e-152 542.3 347 79.3
Oeu052004.1 Olea europaea HOM05D004008 ORTHO05D005383 3.8e-152 542.0 355 78.6
MSTRG.14544 Avicennia marina HOM05D004008 ORTHO05D005383 6.5e-152 541.2 383 74.7
ClCG10G012060 Citrullus lanatus HOM05D004008 ORTHO05D005383 6.5e-152 541.2 374 74.3
Actinidia12791 Actinidia chinensis HOM05D004008 ORTHO05D005383 1.1e-151 540.4 355 78.0
Duzib248G1235 Durio zibethinus HOM05D004008 ORTHO05D005383 1.1e-151 540.4 380 74.7
Glyma.01G227400 Glycine max HOM05D004008 ORTHO05D005383 1.1e-151 540.4 346 78.6
Glyma.11G094700 Glycine max HOM05D004008 ORTHO05D005383 1.1e-151 540.4 354 78.0
Lsat_1_v5_gn_7_112100 Lactuca sativa HOM05D004008 ORTHO05D005383 1.1e-151 540.4 355 78.6
Potri.005G091600 Populus trichocarpa HOM05D004008 ORTHO05D005383 1.1e-151 540.4 368 76.1
Cc05_g16090 Coffea canephora HOM05D004008 ORTHO05D005383 3.2e-151 538.9 386 72.0
Medtr4g076600 Medicago truncatula HOM05D004008 ORTHO05D005383 4.2e-151 538.5 342 80.4
CiPaw.01G129500 Carya illinoinensis HOM05D004008 ORTHO05D005383 5.5e-151 538.1 348 80.2
Ca_26057_v3 Cicer arietinum L. HOM05D004008 ORTHO05D005383 7.1e-151 537.7 327 82.9
Migut.H01689 Erythranthe guttata HOM05D004008 ORTHO05D005383 7.1e-151 537.7 383 74.7
Glyma.12G021100 Glycine max HOM05D004008 ORTHO05D005383 7.1e-151 537.7 354 77.7
SalBow8G2118 Salvia bowleyana HOM05D004008 ORTHO05D005383 7.1e-151 537.7 353 77.1
GSVIVG01002505001 Vitis vinifera HOM05D004008 ORTHO05D005383 7.1e-151 537.7 324 83.0
QL12p007515 Quercus lobata HOM05D004008 ORTHO05D005383 9.3e-151 537.3 371 76.8
Dinv19616 Davidia involucrata HOM05D004008 ORTHO05D005383 1.2e-150 537.0 358 77.7
Lj1A905T43 Lonicera japonica HOM05D004008 ORTHO05D005383 1.2e-150 537.0 378 75.7
FAN12G0417 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.6e-150 536.6 363 76.9
Hma1.2p1_0637F.1_g193530 Hydrangea macrophylla HOM05D004008 ORTHO05D005383 2.7e-150 535.8 355 76.1
CSS0024885 Camellia sinensis var. sinensis HOM05D004008 ORTHO05D005383 4.6e-150 535.0 358 78.2
Sopen07g034650 Solanum pennellii HOM05D004008 ORTHO05D005383 7.9e-150 534.3 361 77.0
arahy.Tifrunner.gnm1.ann1.6Z73IP Arachis hypogaea HOM05D004008 ORTHO05D005383 1.0e-149 533.9 365 75.1
Dinv42507 Davidia involucrata HOM05D004008 ORTHO05D005383 1.3e-149 533.5 358 76.8
FAN07G1552 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.3e-149 533.5 363 76.3
Hma1.2p1_0334F.1_g128730 Hydrangea macrophylla HOM05D004008 ORTHO05D005383 1.8e-149 533.1 385 73.2
Solyc07g066470.3 Solanum lycopersicum HOM05D004008 ORTHO05D005383 1.8e-149 533.1 361 76.7
SGA_v2.0_scaffold186G40215 Striga asiatica HOM05D004008 ORTHO05D005383 1.8e-149 533.1 399 70.9
LjContig00222g0009052 Lotus japonicus HOM05D004008 ORTHO05D005383 2.3e-149 532.7 324 81.8
FvH4_7g04700 Fragaria vesca HOM05D004008 ORTHO05D005383 3.0e-149 532.3 368 74.5
FAN10G2193 Fragaria x ananassa HOM05D004008 ORTHO05D005383 3.0e-149 532.3 368 74.5
Psat7g172760 Pisum sativum HOM05D004008 ORTHO05D005383 3.0e-149 532.3 356 76.7
Phvul.002G034500 Phaseolus vulgaris HOM05D004008 ORTHO05D005383 3.9e-149 531.9 344 77.6
TWI75G1091 Tripterygium wilfordii HOM05D004008 ORTHO05D005383 3.9e-149 531.9 351 78.1
RcHm_v2.0_Chr1g0330101 Rosa chinensis HOM05D004008 ORTHO05D005383 5.1e-149 531.6 369 74.3
PGSC0003DMG400022126 Solanum tuberosum HOM05D004008 ORTHO05D005383 5.1e-149 531.6 361 76.2
TPR.G11683 Trifolium pratense HOM05D004008 ORTHO05D005383 5.1e-149 531.6 364 76.4
Phvul.011G177100 Phaseolus vulgaris HOM05D004008 ORTHO05D005383 8.7e-149 530.8 355 76.6
TAR626G0539 Trochodendron aralioides HOM05D004008 ORTHO05D005383 2.5e-148 529.3 352 77.0
TAR626G1776 Trochodendron aralioides HOM05D004008 ORTHO05D005383 2.5e-148 529.3 352 77.0
TWI12G0055 Tripterygium wilfordii HOM05D004008 ORTHO05D005383 5.7e-148 528.1 348 78.7
arahy.Tifrunner.gnm1.ann1.416KLQ Arachis hypogaea HOM05D004008 ORTHO05D005383 7.4e-148 527.7 356 76.1
arahy.Tifrunner.gnm1.ann1.KXDS8S Arachis hypogaea HOM05D004008 ORTHO05D005383 1.3e-147 526.9 367 74.4
FAN03G0704 Fragaria x ananassa HOM05D004008 ORTHO05D005383 2.8e-147 525.8 364 74.5
unitig_21.g20251 Utricularia gibba HOM05D004008 ORTHO05D005383 3.7e-147 525.4 385 72.5
Sc10g0004580 Simmondsia chinensis HOM05D004008 ORTHO05D005383 6.2e-147 524.6 353 76.5
CAN.G943.40 Capsicum annuum HOM05D004008 ORTHO05D005383 8.2e-147 524.2 364 73.6
HanXRQChr01g0007731 Helianthus annuus HOM05D004008 ORTHO05D005383 8.2e-147 524.2 343 78.4
Gohir.A04G108500 Gossypium hirsutum HOM05D004008 ORTHO05D005383 1.4e-146 523.5 352 77.6
VMungo1127G2017 Vigna mungo HOM05D004008 ORTHO05D005383 1.8e-146 523.1 350 76.0
Nitab4.5_0001791g0020 Nicotiana tabacum HOM05D004008 ORTHO05D005383 2.4e-146 522.7 353 77.1
FAN06G1123 Fragaria x ananassa HOM05D004008 ORTHO05D005383 5.3e-146 521.5 365 74.0
FAN06G2867 Fragaria x ananassa HOM05D004008 ORTHO05D005383 5.3e-146 521.5 365 74.0
HanXRQChr05g0153591 Helianthus annuus HOM05D004008 ORTHO05D005383 1.5e-145 520.0 355 76.3
Peaxi162Scf00006g00139 Petunia axillaris HOM05D004008 ORTHO05D005383 2.0e-145 519.6 376 72.1
Nitab4.5_0000134g0020 Nicotiana tabacum HOM05D004008 ORTHO05D005383 3.4e-145 518.8 353 76.5
Lalb_Chr09g0320431 Lupinus albus HOM05D004008 ORTHO05D005383 7.6e-145 517.7 365 73.7
Nitab4.5_0001749g0010 Nicotiana tabacum HOM05D004008 ORTHO05D005383 1.3e-144 516.9 356 74.2
ATR0763G059 Amborella trichopoda HOM05D004008 ORTHO05D005383 6.5e-144 514.6 322 81.4
Rhsim06G0054400 Rhododendron simsii HOM05D004008 ORTHO05D005383 1.1e-143 513.8 358 74.3
Aqoxy6G00207 Aquilegia oxysepala HOM05D004008 ORTHO05D005383 2.5e-143 512.7 339 77.9
ECA248G2166 Erigeron canadensis HOM05D004008 ORTHO05D005383 9.3e-143 510.8 317 81.4
FAN17G0554 Fragaria x ananassa HOM05D004008 ORTHO05D005383 9.3e-143 510.8 301 83.4
Ah.10g029970 Amaranthus hybridus HOM05D004008 ORTHO05D005383 1.2e-142 510.4 348 74.7
Sabra07G0061100 Salix brachista HOM05D004008 ORTHO05D005383 4.6e-142 508.4 459 62.5
EL10Ac2g02758 Beta vulgaris HOM05D004008 ORTHO05D005383 1.8e-141 506.5 332 77.1
CDE05G3126 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 2.3e-141 506.1 357 73.7
PSO541G2232 Papaver somniferum HOM05D004008 ORTHO05D005383 2.3e-141 506.1 355 73.8
CDE11G0020 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 3.0e-141 505.8 359 73.8
Hund13394 Selenicereus undatus HOM05D004008 ORTHO05D005383 3.9e-141 505.4 351 74.6
MBI18_g03839_MAGBIO Magnolia biondii HOM05D004008 ORTHO05D005383 5.1e-141 505.0 330 77.9
PSO675G0755 Papaver somniferum HOM05D004008 ORTHO05D005383 6.7e-141 504.6 355 73.8
Sabra05G0076100 Salix brachista HOM05D004008 ORTHO05D005383 1.9e-140 503.1 442 63.3
Nitab4.5_0001080g0030 Nicotiana tabacum HOM05D004008 ORTHO05D005383 4.3e-140 501.9 391 67.8
SGA_v2.0_scaffold7G03592 Striga asiatica HOM05D004008 ORTHO05D005383 4.3e-140 501.9 383 69.7
CDE02G2123 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 2.2e-139 499.6 321 78.8
CSS0025050 Camellia sinensis var. sinensis HOM05D004008 ORTHO05D005383 3.7e-139 498.8 357 75.1
AUR62031735 Chenopodium quinoa HOM05D004008 ORTHO05D005383 1.1e-138 497.3 364 70.6
HPP92_002271 Vanilla planifolia HOM05D004008 ORTHO05D005383 1.8e-138 496.5 345 73.3
AUR62032620 Chenopodium quinoa HOM05D004008 ORTHO05D005383 2.4e-138 496.1 369 69.6
Gohir.D04G148100 Gossypium hirsutum HOM05D004008 ORTHO05D005383 5.9e-137 491.5 286 86.0
Lj4g0025599 Lotus japonicus HOM05D004008 ORTHO05D005383 1.3e-136 490.3 321 77.6
vmacro11667 Vaccinium macrocarpon HOM05D004008 ORTHO05D005383 2.2e-136 489.6 447 62.0
MELO3C024010.2 Cucumis melo HOM05D004008 ORTHO05D005383 5.0e-136 488.4 286 84.3
Os02g0168800 Oryza sativa ssp. japonica HOM05D004008 ORTHO05D005383 1.4e-133 480.3 323 74.6
Mapoly0015s0060 Marchantia polymorpha HOM05D004008 ORTHO05D005383 3.9e-133 478.8 384 65.9
Zm00001eb207370 Zea mays HOM05D004008 ORTHO05D005383 5.1e-133 478.4 323 73.7
Pp3c5_16770 Physcomitrium patens HOM05D004008 ORTHO05D005383 8.8e-133 477.6 348 71.3
Pp3c15_6300 Physcomitrium patens HOM05D004008 ORTHO05D005383 5.7e-132 474.9 328 74.1
Pp3c6_15990 Physcomitrium patens HOM05D004008 ORTHO05D005383 7.4e-132 474.6 321 74.5
DCAR_013737 Daucus carota HOM05D004008 ORTHO05D005383 1.1e-130 470.7 330 74.5
SEGI_21965 Sequoiadendron giganteum HOM05D004008 ORTHO05D005383 1.2e-129 467.2 299 77.6
SMO364G0819 Selaginella moellendorffii HOM05D004008 ORTHO05D005383 4.5e-129 465.3 319 75.5
Zm00001eb233020 Zea mays HOM05D004008 ORTHO05D005383 2.2e-128 463.0 299 76.3
CBR_g48425 Chara braunii HOM05D004008 ORTHO05D005383 9.4e-127 457.6 338 69.2
TAR624G0715 Trochodendron aralioides HOM05D004008 ORTHO05D005383 4.1e-122 442.2 309 74.8
Cre16.g663900 Chlamydomonas reinhardtii HOM05D004008 ORTHO05D005383 2.0e-113 413.3 311 68.2
MCO01G747 Micromonas commoda HOM05D004008 ORTHO05D005383 8.0e-110 401.4 322 64.3
Sed0020742 Sechium edule HOM05D004008 ORTHO05D005383 3.5e-105 386.0 246 79.7
Oeu001944.1 Olea europaea HOM05D004008 ORTHO05D005383 1.1e-103 380.9 260 76.9
FvH4_4g37020 Fragaria vesca HOM05D004008 ORTHO05D005383 3.6e-102 375.9 268 76.1
PRCOL_00005560 Prasinoderma coloniale HOM05D004008 ORTHO05D005383 2.8e-94 349.7 290 62.4
AagrBONN_evm.TU.Sc2ySwM_117.3714 Anthoceros agrestis HOM05D004008 ORTHO05D005383 2.0e-92 343.6 259 73.0
Psat5g025240 Pisum sativum HOM05D004008 ORTHO05D005383 2.1e-73 280.4 310 54.5
Haze_26918 Corylus avellana HOM05D004008 ORTHO05D163716 3.3e-71 273.1 308 51.0
arahy.Tifrunner.gnm1.ann1.VI50KN Arachis hypogaea HOM05D004008 ORTHO05D005383 2.6e-68 263.5 203 69.5
Nn7g38125 Nelumbo nucifera HOM05D004008 ORTHO05D005383 1.9e-66 257.3 192 71.9
BcaC07g39332 Brassica carinata HOM05D004008 ORTHO05D032875 3.2e-66 256.5 228 67.5
Actinidia07354 Actinidia chinensis HOM05D004008 ORTHO05D005383 2.0e-60 237.3 205 60.5
C08p23470 Brassica napus HOM05D004008 ORTHO05D032875 7.6e-60 235.3 228 63.2
BolC8t49976H Brassica oleracea HOM05D004008 ORTHO05D032875 7.6e-60 235.3 228 63.2
Glyma.11G015433 Glycine max HOM05D004008 ORTHO05D005383 2.3e-48 197.2 112 81.2
Psat5g278360 Pisum sativum HOM05D004008 ORTHO05D000002 2.9e-43 180.3 161 62.7
BcaC08g43816 Brassica carinata HOM05D004008 ORTHO05D013026 6.7e-40 169.1 104 80.8
BcaC04g20718 Brassica carinata HOM05D004008 ORTHO05D027220 4.3e-39 166.4 102 82.4
C09p39940 Brassica napus HOM05D004008 ORTHO05D027220 4.3e-39 166.4 102 82.4
C03p57930 Brassica napus HOM05D004008 ORTHO05D027220 2.8e-38 163.7 102 81.4
BolC9t56891H Brassica oleracea HOM05D004008 ORTHO05D013026 2.4e-37 160.6 106 77.4
C02p56520 Brassica napus HOM05D000109 ORTHO05D000210 1.2e-36 158.3 98 80.6
BcaC03g17816 Brassica carinata HOM05D003055 ORTHO05D013026 7.6e-36 155.6 107 72.9
C02p58390 Brassica napus HOM05D003055 ORTHO05D013026 1.1e-34 151.8 106 72.6
Cre02.g113850 Chlamydomonas reinhardtii HOM05D004008 ORTHO05D145669 1.1e-31 141.7 284 34.2
BolC3t18065H Brassica oleracea HOM05D003055 ORTHO05D013026 2.4e-21 107.5 64 81.2
TPR.G13755 Trifolium pratense HOM05D004008 ORTHO05D410752 3.6e-17 93.6 67 74.6
Psat6g163360 Pisum sativum HOM05D005575 ORTHO05D000484 2.3e-16 90.9 49 91.8
Rhsim06G0151600 Rhododendron simsii HOM05D001371 ORTHO05D001319 6.3e-14 82.8 61 73.8
C05p24790 Brassica napus HOM05D003055 ORTHO05D013026 4.5e-12 76.6 38 92.1
BcaC01g02956 Brassica carinata HOM05D003055 ORTHO05D013026 5.0e-11 73.2 38 89.5


User provided reference genes

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