Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G47720 Arabidopsis lyrata HOM05D006016 ORTHO05D007553 2.9e-169 598.6 326 100.0
Carub.0004s3083 Capsella rubella HOM05D006016 ORTHO05D007553 6.3e-148 527.7 328 87.2
CARHR124900 Cardamine hirsuta HOM05D006016 ORTHO05D007553 1.1e-136 490.3 326 83.4
AT2G48120 Arabidopsis thaliana HOM05D006016 ORTHO05D007553 5.2e-134 481.5 328 86.3
Thhalv10001558m.g Eutrema salsugineum HOM05D006016 ORTHO05D007553 2.0e-130 469.5 328 81.4
BcaB02g08738 Brassica carinata HOM05D006016 ORTHO05D007553 4.2e-128 461.8 327 81.3
BraA05t18997Z Brassica rapa HOM05D006016 ORTHO05D007553 1.4e-126 456.8 328 80.2
Sp4g30040 Schrenkiella parvula HOM05D006016 ORTHO05D007553 8.3e-124 447.6 332 79.5
BolC4t21679H Brassica oleracea HOM05D006016 ORTHO05D007553 1.1e-123 447.2 347 76.7
BolSC55t61226H Brassica oleracea HOM05D006016 ORTHO05D007553 3.1e-123 445.7 347 76.4
A05p00010 Brassica napus HOM05D006016 ORTHO05D007553 2.9e-121 439.1 319 79.6
Aa31LG4G3290 Aethionema arabicum HOM05D006016 ORTHO05D007553 2.3e-118 429.5 334 73.4
BcaC02g12797 Brassica carinata HOM05D006016 ORTHO05D007553 1.3e-116 423.7 328 77.4
THA.LOC104823056 Tarenaya hassleriana HOM05D006016 ORTHO05D007553 1.5e-109 400.2 329 72.0
PGR044G1280 Punica granatum HOM05D006016 ORTHO05D007553 5.4e-107 391.7 326 66.0
Haze_04746 Corylus avellana HOM05D006016 ORTHO05D007553 4.6e-106 388.7 288 71.9
BcaC02g12566 Brassica carinata HOM05D006016 ORTHO05D007553 7.8e-106 387.9 329 73.3
ClCG07G000070 Citrullus lanatus HOM05D006016 ORTHO05D007553 1.0e-105 387.5 274 73.7
Cfa006104 Carpinus fangiana HOM05D006016 ORTHO05D007553 3.0e-105 386.0 288 71.9
Ciclev10020923m.g Citrus clementina HOM05D006016 ORTHO05D007553 3.9e-105 385.6 274 76.3
QL12p022630 Quercus lobata HOM05D006016 ORTHO05D007553 8.6e-105 384.4 330 65.8
RcHm_v2.0_Chr1g0321311 Rosa chinensis HOM05D006016 ORTHO05D007553 8.6e-105 384.4 274 77.0
COL.COLO4_09142 Corchorus olitorius HOM05D006016 ORTHO05D007553 1.5e-104 383.6 274 73.4
CANSAT80G0718 Cannabis sativa HOM05D006016 ORTHO05D007553 2.5e-104 382.9 323 67.8
BolSC55t61222H Brassica oleracea HOM05D006016 ORTHO05D007553 3.3e-104 382.5 274 78.5
GSVIVG01011095001 Vitis vinifera HOM05D006016 ORTHO05D007553 5.6e-104 381.7 326 67.2
BNapus_Darmor_BZH_scaffold_188p00120 Brassica napus HOM05D006016 ORTHO05D007553 9.5e-104 380.9 230 87.8
BNapus_Darmor_BZH_scaffold_188p00130 Brassica napus HOM05D006016 ORTHO05D007553 9.5e-104 380.9 230 87.8
MD11G1289700 Malus domestica HOM05D006016 ORTHO05D007553 1.6e-103 380.2 274 74.5
MD03G1268900 Malus domestica HOM05D006016 ORTHO05D007553 2.1e-103 379.8 274 74.5
Sed0013000 Sechium edule HOM05D006016 ORTHO05D007553 2.8e-103 379.4 279 72.8
Duzib138G0992 Durio zibethinus HOM05D006016 ORTHO05D007553 6.2e-103 378.3 279 72.0
Manes.01G210000 Manihot esculenta HOM05D006016 ORTHO05D007553 6.2e-103 378.3 273 72.5
MELO3C014346.2 Cucumis melo HOM05D006016 ORTHO05D007553 1.1e-102 377.5 274 71.2
Potri.014G138500 Populus trichocarpa HOM05D006016 ORTHO05D007553 1.1e-102 377.5 268 71.3
Nn1g02145 Nelumbo nucifera HOM05D006016 ORTHO05D007553 5.2e-102 375.2 327 64.2
CiPaw.07G094500 Carya illinoinensis HOM05D006016 ORTHO05D007553 8.9e-102 374.4 285 71.6
Ca_09774_v3 Cicer arietinum L. HOM05D006016 ORTHO05D007553 8.9e-102 374.4 301 69.8
Prupe.8G244900 Prunus persica HOM05D006016 ORTHO05D007553 1.2e-101 374.0 313 65.8
Aqoxy2G03243 Aquilegia oxysepala HOM05D006016 ORTHO05D007553 2.6e-101 372.9 329 61.1
Medtr1g072640 Medicago truncatula HOM05D006016 ORTHO05D007553 2.6e-101 372.9 321 65.1
SGA_v2.0_scaffold1G00448 Striga asiatica HOM05D006016 ORTHO05D007553 2.6e-101 372.9 274 70.8
Hma1.2p1_0628F.1_g191900 Hydrangea macrophylla HOM05D006016 ORTHO05D007553 3.4e-101 372.5 263 73.8
Sc05g0005010 Simmondsia chinensis HOM05D006016 ORTHO05D007553 4.4e-101 372.1 265 75.1
Eucgr.K03395 Eucalyptus grandis HOM05D006016 ORTHO05D007553 1.7e-100 370.2 318 65.4
Gorai.004G083400 Gossypium raimondii HOM05D006016 ORTHO05D007553 2.9e-100 369.4 279 71.7
Oeu011169.1 Olea europaea HOM05D006016 ORTHO05D007553 8.3e-100 367.9 268 68.7
Gohir.A08G069800 Gossypium hirsutum HOM05D006016 ORTHO05D007553 1.1e-99 367.5 274 71.9
Eucgr.K03393 Eucalyptus grandis HOM05D006016 ORTHO05D007553 1.9e-99 366.7 326 64.7
Thecc.01G283800 Theobroma cacao HOM05D006016 ORTHO05D007553 2.4e-99 366.3 328 65.2
FvH4_7g02610 Fragaria vesca HOM05D006016 ORTHO05D007553 3.2e-99 365.9 327 64.8
MSTRG.18215 Avicennia marina HOM05D006016 ORTHO05D007553 4.1e-99 365.5 284 70.4
Cpa.g.sc485.5 Carica papaya HOM05D006016 ORTHO05D007553 5.4e-99 365.2 253 78.3
TPR.G1544 Trifolium pratense HOM05D000563 ORTHO05D000536 7.0e-99 364.8 276 72.8
Glyma.10G024400 Glycine max HOM05D006016 ORTHO05D007553 9.2e-99 364.4 328 63.1
CSS0041846 Camellia sinensis var. sinensis HOM05D006016 ORTHO05D007553 1.6e-98 363.6 274 70.1
AUR62004906 Chenopodium quinoa HOM05D006016 ORTHO05D007553 2.0e-98 363.2 262 69.1
Atru.chr5.1361 Acer truncatum HOM05D006016 ORTHO05D007553 2.7e-98 362.8 274 73.0
Nitab4.5_0006180g0080 Nicotiana tabacum HOM05D006016 ORTHO05D007553 2.7e-98 362.8 328 62.5
Hund06953 Selenicereus undatus HOM05D006016 ORTHO05D007553 2.7e-98 362.8 278 72.3
FAN03G2867 Fragaria x ananassa HOM05D006016 ORTHO05D007553 3.5e-98 362.5 285 70.2
DCAR_002754 Daucus carota HOM05D006016 ORTHO05D007553 1.0e-97 360.9 274 69.3
EL10Ac4g09090 Beta vulgaris HOM05D006016 ORTHO05D007553 1.3e-97 360.5 262 69.1
Nitab4.5_0007392g0030 Nicotiana tabacum HOM05D006016 ORTHO05D007553 1.7e-97 360.1 329 60.5
Cc02_g34480 Coffea canephora HOM05D006016 ORTHO05D007553 5.0e-97 358.6 315 62.2
Migut.D00263 Erythranthe guttata HOM05D006016 ORTHO05D007553 6.6e-97 358.2 280 65.0
Lalb_Chr21g0306561 Lupinus albus HOM05D006016 ORTHO05D007553 5.6e-96 355.1 317 64.4
PGSC0003DMG400000944 Solanum tuberosum HOM05D006016 ORTHO05D007553 5.6e-96 355.1 333 62.2
PSO170G1401 Papaver somniferum HOM05D006016 ORTHO05D007553 7.3e-96 354.8 329 58.4
PSO407G0301 Papaver somniferum HOM05D006016 ORTHO05D007553 7.3e-96 354.8 265 67.9
Solyc09g064790.3 Solanum lycopersicum HOM05D006016 ORTHO05D007553 7.3e-96 354.8 327 62.7
TAR633G0970 Trochodendron aralioides HOM05D006016 ORTHO05D007553 1.6e-95 353.6 253 75.9
CAN.G962.6 Capsicum annuum HOM05D006016 ORTHO05D007553 2.1e-95 353.2 326 62.9
Sopen09g026490 Solanum pennellii HOM05D006016 ORTHO05D007553 4.7e-95 352.1 327 63.0
arahy.Tifrunner.gnm1.ann1.Q6PPUG Arachis hypogaea HOM05D006016 ORTHO05D007553 8.9e-94 347.8 272 67.3
FAN01G1545 Fragaria x ananassa HOM05D006016 ORTHO05D007553 1.5e-93 347.1 326 62.9
arahy.Tifrunner.gnm1.ann1.NXI6YJ Arachis hypogaea HOM05D006016 ORTHO05D007553 2.0e-93 346.7 272 67.6
CsaV3_6G036870 Cucumis sativus L. HOM05D006016 ORTHO05D007553 2.0e-93 346.7 275 66.9
CDE01G0302 Ceratophyllum demersum HOM05D006016 ORTHO05D007553 3.4e-93 345.9 264 70.1
ATR0626G088 Amborella trichopoda HOM05D006016 ORTHO05D007553 1.3e-92 344.0 272 66.9
AUR62032753 Chenopodium quinoa HOM05D006016 ORTHO05D007553 3.7e-92 342.4 251 69.3
Peaxi162Scf00104g00220 Petunia axillaris HOM05D006016 ORTHO05D007553 1.9e-91 340.1 274 64.2
Lj2C1178T3 Lonicera japonica HOM05D006016 ORTHO05D007553 7.1e-91 338.2 229 75.5
TWI14G0073 Tripterygium wilfordii HOM05D006016 ORTHO05D007553 9.2e-91 337.8 276 67.8
Lsat_1_v5_gn_5_187441 Lactuca sativa HOM05D006016 ORTHO05D007553 6.0e-90 335.1 290 60.3
Phvul.007G169400 Phaseolus vulgaris HOM05D006016 ORTHO05D007553 1.0e-89 334.3 272 71.0
Lj5g0023557 Lotus japonicus HOM05D006016 ORTHO05D007553 2.3e-89 333.2 280 70.0
Sabra14G0104500 Salix brachista HOM05D006016 ORTHO05D007553 2.3e-89 333.2 265 65.3
Rhsim01G0276200 Rhododendron simsii HOM05D006016 ORTHO05D007553 1.9e-88 330.1 384 50.3
Os05g0393400 Oryza sativa ssp. japonica HOM05D006016 ORTHO05D007553 2.5e-88 329.7 267 62.5
SalBow4G2498 Salvia bowleyana HOM05D006016 ORTHO05D007553 3.3e-88 329.3 274 63.9
BolSC55t61219H Brassica oleracea HOM05D006016 ORTHO05D007553 4.3e-88 328.9 231 82.7
HanXRQChr01g0002401 Helianthus annuus HOM05D006016 ORTHO05D007553 5.6e-88 328.6 273 60.8
HPP92_025128 Vanilla planifolia HOM05D006016 ORTHO05D007553 4.7e-87 325.5 280 61.8
unitig_61.g26325 Utricularia gibba HOM05D006016 ORTHO05D007553 6.2e-87 325.1 320 58.1
arahy.Tifrunner.gnm1.ann1.95RMVD Arachis hypogaea HOM05D006016 ORTHO05D007553 8.1e-87 324.7 271 65.3
ECA248G0902 Erigeron canadensis HOM05D006016 ORTHO05D007553 4.0e-86 322.4 262 65.3
BolSC55t61223H Brassica oleracea HOM05D006016 ORTHO05D007553 4.4e-85 318.9 229 81.7
Psat6g138080 Pisum sativum HOM05D006016 ORTHO05D007553 5.4e-83 312.0 231 71.0
Zm00001eb287380 Zea mays HOM05D006016 ORTHO05D007553 2.8e-79 299.7 253 61.3
Gohir.D08G079100 Gossypium hirsutum HOM05D006016 ORTHO05D007553 6.2e-79 298.5 275 62.9
Dinv32962 Davidia involucrata HOM05D006016 ORTHO05D007553 9.3e-75 284.6 189 75.1
SEGI_37912 Sequoiadendron giganteum HOM05D006016 ORTHO05D007553 5.6e-72 275.4 277 56.3
Hma1.2p1_0628F.1_g191890 Hydrangea macrophylla HOM05D006016 ORTHO05D007553 9.6e-72 274.6 243 64.2
vmacro14936 Vaccinium macrocarpon HOM05D006016 ORTHO05D007553 5.3e-70 268.9 189 70.4
QL10p008835 Quercus lobata HOM05D006016 ORTHO05D007553 9.3e-67 258.1 186 75.3
arahy.Tifrunner.gnm1.ann1.9IJ3BZ Arachis hypogaea HOM05D006016 ORTHO05D007553 2.3e-65 253.4 298 52.0
Actinidia21099 Actinidia chinensis HOM05D006016 ORTHO05D007553 8.4e-60 235.0 263 53.2
SMO360G0019 Selaginella moellendorffii HOM05D006016 ORTHO05D007553 1.0e-57 228.0 255 47.1
Mapoly0059s0024 Marchantia polymorpha HOM05D006016 ORTHO05D007553 1.7e-52 210.7 226 50.9
BraA05t18995Z Brassica rapa HOM05D006016 ORTHO05D007553 3.2e-51 206.5 133 80.5
Pp3c5_15510 Physcomitrium patens HOM05D006016 ORTHO05D007553 4.2e-51 206.1 255 49.0
BNapus_Darmor_BZH_scaffold_188p00100 Brassica napus HOM05D006016 ORTHO05D007553 2.8e-47 193.4 130 78.5
Glyma.02G149402 Glycine max HOM05D006016 ORTHO05D007553 2.8e-47 193.4 140 77.1
Lj9C654T2 Lonicera japonica HOM05D006016 ORTHO05D007553 2.8e-47 193.4 191 55.5
AagrBONN_evm.TU.Sc2ySwM_228.5509 Anthoceros agrestis HOM05D006016 ORTHO05D007553 3.0e-41 173.3 171 48.0
BNapus_Darmor_BZH_scaffold_188p00090 Brassica napus HOM05D001484 ORTHO05D007553 1.7e-39 167.5 108 88.0
CBR_g23747 Chara braunii HOM05D006016 ORTHO05D007553 3.2e-27 126.7 226 36.3
Actinidia24878 Actinidia chinensis HOM05D006016 ORTHO05D007553 4.2e-27 126.3 163 48.5
QL09p051040 Quercus lobata HOM05D006016 ORTHO05D007553 6.7e-25 119.0 119 53.8
BcaC08g43234 Brassica carinata HOM05D006016 ORTHO05D007553 3.7e-23 113.2 70 78.6
Oeu001432.1 Olea europaea HOM05D006016 ORTHO05D007553 6.3e-23 112.5 102 58.8
QL09p050526 Quercus lobata HOM05D006016 ORTHO05D337571 7.2e-19 99.0 101 53.5
AUR62004907 Chenopodium quinoa HOM05D006016 ORTHO05D007553 1.2e-18 98.2 83 62.7
MBI04_g32261_MAGBIO Magnolia biondii HOM05D006016 ORTHO05D007553 4.5e-13 79.7 72 59.7
Dinv13370 Davidia involucrata HOM05D006016 ORTHO05D007553 4.7e-10 69.7 78 52.6
Dinv16891 Davidia involucrata HOM05D006016 ORTHO05D007553 2.0e-08 64.3 65 63.1
Dinv01676 Davidia involucrata HOM05D006016 ORTHO05D007553 9.8e-08 62.0 65 56.9
BolC6t35694H Brassica oleracea HOM05D006016 ORTHO05D007553 6.3e-07 59.3 46 71.7
Lj9C654T3 Lonicera japonica HOM05D006016 ORTHO05D007553 5.4e-06 56.2 47 59.6
QL09p050966 Quercus lobata HOM05D001484 ORTHO05D001564 5.4e-06 56.2 34 64.7


User provided reference genes

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