Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G27320 Arabidopsis lyrata HOM05D005045 ORTHO05D006386 0.0e+00 2405.6 1317 100.0
AT2G31970 Arabidopsis thaliana HOM05D005045 ORTHO05D006386 0.0e+00 2325.1 1317 97.0
Carub.0004s1329 Capsella rubella HOM05D005045 ORTHO05D006386 0.0e+00 2289.6 1317 92.2
Thhalv10016151m.g Eutrema salsugineum HOM05D005045 ORTHO05D006386 0.0e+00 2233.8 1317 89.5
Sp4g14350 Schrenkiella parvula HOM05D005045 ORTHO05D006386 0.0e+00 2217.2 1317 91.6
BcaB01g04004 Brassica carinata HOM05D005045 ORTHO05D006386 0.0e+00 2152.5 1317 89.0
A03p17990 Brassica napus HOM05D005045 ORTHO05D006386 0.0e+00 2122.8 1340 87.2
C03p21030 Brassica napus HOM05D005045 ORTHO05D006386 0.0e+00 2117.8 1332 87.5
BraA03t11060Z Brassica rapa HOM05D005045 ORTHO05D006386 0.0e+00 2117.8 1359 86.1
BolC3t14484H Brassica oleracea HOM05D005045 ORTHO05D006386 0.0e+00 2117.4 1332 87.5
THA.LOC104826172 Tarenaya hassleriana HOM05D005045 ORTHO05D006386 0.0e+00 2052.7 1317 82.5
Aa31LG5G5040 Aethionema arabicum HOM05D005045 ORTHO05D006386 0.0e+00 2007.3 1343 80.5
CiPaw.01G116800 Carya illinoinensis HOM05D005045 ORTHO05D006386 0.0e+00 1924.8 1317 76.8
Cpa.g.sc157.48 Carica papaya HOM05D005045 ORTHO05D006386 0.0e+00 1897.5 1317 75.7
TWI53G1845 Tripterygium wilfordii HOM05D005045 ORTHO05D006386 0.0e+00 1881.3 1317 75.2
Cfa014961 Carpinus fangiana HOM05D005045 ORTHO05D006386 0.0e+00 1877.4 1303 76.1
Potri.001G320300 Populus trichocarpa HOM05D005045 ORTHO05D006386 0.0e+00 1834.3 1317 72.8
Sed0026716 Sechium edule HOM05D005045 ORTHO05D006386 0.0e+00 1828.1 1317 72.9
Ciclev10004166m.g Citrus clementina HOM05D005045 ORTHO05D006386 0.0e+00 1815.8 1317 72.7
MELO3C006292.2 Cucumis melo HOM05D005045 ORTHO05D006386 0.0e+00 1781.1 1317 71.6
Haze_11653 Corylus avellana HOM05D005045 ORTHO05D006386 0.0e+00 1780.8 1549 66.6
Dinv38168 Davidia involucrata HOM05D005045 ORTHO05D006386 0.0e+00 1773.4 1317 71.9
Glyma.18G002400 Glycine max HOM05D005045 ORTHO05D006386 0.0e+00 1770.7 1317 70.9
Actinidia28996 Actinidia chinensis HOM05D005045 ORTHO05D006386 0.0e+00 1761.5 1321 71.7
Phvul.001G266800 Phaseolus vulgaris HOM05D005045 ORTHO05D006386 0.0e+00 1761.5 1317 70.1
PGR142G0016 Punica granatum HOM05D005045 ORTHO05D006386 0.0e+00 1752.6 1317 71.0
Lj6g0005100 Lotus japonicus HOM05D005045 ORTHO05D006386 0.0e+00 1749.9 1317 69.9
CsaV3_3G010730 Cucumis sativus L. HOM05D005045 ORTHO05D006386 0.0e+00 1745.7 1317 70.4
Prupe.1G165000 Prunus persica HOM05D005045 ORTHO05D006386 0.0e+00 1734.5 1317 69.8
Lalb_Chr11g0075871 Lupinus albus HOM05D005045 ORTHO05D006386 0.0e+00 1733.4 1317 69.3
FvH4_4g13300 Fragaria vesca HOM05D005045 ORTHO05D006386 0.0e+00 1731.5 1317 69.4
Manes.03G144200 Manihot esculenta HOM05D005045 ORTHO05D006386 0.0e+00 1729.9 1317 69.9
RcHm_v2.0_Chr4g0413591 Rosa chinensis HOM05D005045 ORTHO05D006386 0.0e+00 1728.8 1317 69.3
ClCG05G003110 Citrullus lanatus HOM05D005045 ORTHO05D006386 0.0e+00 1727.6 1365 68.4
Cc03_g08470 Coffea canephora HOM05D005045 ORTHO05D006386 0.0e+00 1725.3 1318 71.3
MD05G1230300 Malus domestica HOM05D005045 ORTHO05D006386 0.0e+00 1711.0 1317 68.3
Sabra16G0202900 Salix brachista HOM05D005045 ORTHO05D006386 0.0e+00 1705.6 1431 64.6
Peaxi162Scf00423g00410 Petunia axillaris HOM05D005045 ORTHO05D006386 0.0e+00 1666.4 1317 67.4
FAN22G0494 Fragaria x ananassa HOM05D005045 ORTHO05D006386 0.0e+00 1664.8 1370 65.7
Migut.G00767 Erythranthe guttata HOM05D005045 ORTHO05D006386 0.0e+00 1664.0 1317 66.1
Thecc.04G195000 Theobroma cacao HOM05D005045 ORTHO05D006386 0.0e+00 1660.6 1317 67.7
CAN.G765.38 Capsicum annuum HOM05D005045 ORTHO05D006386 0.0e+00 1660.2 1317 67.4
CSS0020032 Camellia sinensis var. sinensis HOM05D005045 ORTHO05D006386 0.0e+00 1656.7 1317 67.2
FAN12G2321 Fragaria x ananassa HOM05D005045 ORTHO05D006386 0.0e+00 1632.8 1318 66.5
PSO017G0058 Papaver somniferum HOM05D005045 ORTHO05D006386 0.0e+00 1632.8 1317 66.0
Psat5g100040 Pisum sativum HOM05D005045 ORTHO05D006386 0.0e+00 1632.8 1317 66.5
Sopen05g032270 Solanum pennellii HOM05D005045 ORTHO05D006386 0.0e+00 1620.1 1317 65.8
VMungo1383G3533 Vigna mungo HOM05D005045 ORTHO05D006386 0.0e+00 1619.8 1311 66.0
Eucgr.H00025 Eucalyptus grandis HOM05D005045 ORTHO05D006386 0.0e+00 1617.4 1210 70.7
HPP92_024209 Vanilla planifolia HOM05D005045 ORTHO05D006386 0.0e+00 1615.5 1317 65.4
Aqoxy2G03932 Aquilegia oxysepala HOM05D005045 ORTHO05D006386 0.0e+00 1614.7 1317 65.6
Duzib151G0179 Durio zibethinus HOM05D005045 ORTHO05D006386 0.0e+00 1607.8 1317 66.1
MSTRG.9796 Avicennia marina HOM05D005045 ORTHO05D006386 0.0e+00 1602.4 1317 64.8
Solyc05g053800.3 Solanum lycopersicum HOM05D005045 ORTHO05D006386 0.0e+00 1602.4 1317 65.3
Nn3g20083 Nelumbo nucifera HOM05D005045 ORTHO05D006386 0.0e+00 1599.3 1325 64.5
Medtr3g084300 Medicago truncatula HOM05D005045 ORTHO05D006386 0.0e+00 1586.6 1317 65.5
Sc19g0007360 Simmondsia chinensis HOM05D005045 ORTHO05D006386 0.0e+00 1585.5 1210 69.0
Atru.chr4.1578 Acer truncatum HOM05D005045 ORTHO05D006386 0.0e+00 1579.3 1317 65.8
Nitab4.5_0002260g0080 Nicotiana tabacum HOM05D005045 ORTHO05D006386 0.0e+00 1567.7 1261 66.1
TPR.G25379 Trifolium pratense HOM05D005045 ORTHO05D006386 0.0e+00 1559.7 1337 63.3
FAN07G1455 Fragaria x ananassa HOM05D005045 ORTHO05D006386 0.0e+00 1552.7 1256 66.6
Rhsim02G0061900 Rhododendron simsii HOM05D005045 ORTHO05D006386 0.0e+00 1542.7 1401 61.2
Gohir.A02G019100 Gossypium hirsutum HOM05D005045 ORTHO05D006386 0.0e+00 1541.9 1318 64.3
ATR0561G148 Amborella trichopoda HOM05D005045 ORTHO05D006386 0.0e+00 1538.9 1303 63.3
Gohir.D02G022400 Gossypium hirsutum HOM05D005045 ORTHO05D006386 0.0e+00 1536.2 1318 64.0
Gorai.005G027800 Gossypium raimondii HOM05D005045 ORTHO05D006386 0.0e+00 1535.8 1318 64.0
EL10Ac3g07454 Beta vulgaris HOM05D005045 ORTHO05D006386 0.0e+00 1523.5 1317 62.8
SalBow8G0828 Salvia bowleyana HOM05D005045 ORTHO05D006386 0.0e+00 1518.4 1303 62.1
Lsat_1_v5_gn_6_59140 Lactuca sativa HOM05D005045 ORTHO05D006386 0.0e+00 1510.0 1317 61.6
HanXRQChr02g0058481 Helianthus annuus HOM05D005045 ORTHO05D006386 0.0e+00 1507.7 1317 61.5
ECA233G4939 Erigeron canadensis HOM05D005045 ORTHO05D006386 0.0e+00 1506.1 1317 61.4
CDE02G0777 Ceratophyllum demersum HOM05D005045 ORTHO05D006386 0.0e+00 1499.6 1318 62.5
SGA_v2.0_scaffold27G11679 Striga asiatica HOM05D005045 ORTHO05D006386 0.0e+00 1493.4 1317 61.6
vmacro15566 Vaccinium macrocarpon HOM05D005045 ORTHO05D006386 0.0e+00 1484.5 1370 62.8
DCAR_005488 Daucus carota HOM05D005045 ORTHO05D006386 0.0e+00 1464.9 1303 61.2
CARHR125720 Cardamine hirsuta HOM05D005045 ORTHO05D006386 0.0e+00 1273.8 743 89.9
Mapoly0027s0186 Marchantia polymorpha HOM05D005045 ORTHO05D006386 0.0e+00 1221.1 1317 52.2
BcaNung07126 Brassica carinata HOM05D005045 ORTHO05D006386 0.0e+00 1165.6 767 81.4
Pp3c10_3760 Physcomitrium patens HOM05D005045 ORTHO05D006386 0.0e+00 1134.0 1318 48.0
Zm00001eb181120 Zea mays HOM05D005045 ORTHO05D006386 0.0e+00 1111.7 1062 56.7
AagrBONN_evm.TU.Sc2ySwM_368.995 Anthoceros agrestis HOM05D002013 ORTHO05D002293 0.0e+00 1083.9 1314 47.2
BcaC01g05925 Brassica carinata HOM05D005045 ORTHO05D006386 1.8e-310 1069.7 790 75.8
SMO356G0717 Selaginella moellendorffii HOM05D005045 ORTHO05D006386 8.7e-289 997.7 1318 45.1
unitig_0.g1961 Utricularia gibba HOM05D005045 ORTHO05D006386 6.2e-287 991.5 1059 52.2
Nitab4.5_0003358g0080 Nicotiana tabacum HOM05D005045 ORTHO05D006386 5.3e-286 988.4 1025 54.6
Oeu034322.3 Olea europaea HOM05D005045 ORTHO05D006386 8.7e-281 971.1 902 58.8
MBI07_g27365_MAGBIO Magnolia biondii HOM05D005045 ORTHO05D006386 1.1e-278 964.1 759 66.8
AUR62020863 Chenopodium quinoa HOM05D005045 ORTHO05D006386 4.5e-269 932.2 888 57.0
SMO217G0009 Selaginella moellendorffii HOM05D005045 ORTHO05D006386 4.5e-269 932.2 1252 48.0
Ah.04g149410 Amaranthus hybridus HOM05D005045 ORTHO05D006386 1.0e-252 877.9 1102 48.0
TAR362G1154 Trochodendron aralioides HOM05D005045 ORTHO05D006386 2.2e-244 850.1 669 68.8
SEGI_03959 Sequoiadendron giganteum HOM05D005045 ORTHO05D006386 8.2e-239 831.6 761 58.9
Os02g0497500 Oryza sativa ssp. japonica HOM05D005045 ORTHO05D006386 5.9e-237 825.5 728 59.2
arahy.Tifrunner.gnm1.ann1.RK3EBX Arachis hypogaea HOM05D005045 ORTHO05D006386 1.3e-236 824.3 631 69.1
arahy.Tifrunner.gnm1.ann1.2Y4S4L Arachis hypogaea HOM05D005045 ORTHO05D006386 6.5e-236 822.0 631 69.1
Lju912A1G33 Lonicera japonica HOM05D005045 ORTHO05D006386 4.1e-230 802.7 729 59.1
Ca_16407_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 4.5e-229 799.3 594 70.4
Ca_16416_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 4.5e-229 799.3 594 70.4
Ca_16406_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 5.7e-216 755.7 631 65.3
CBR_g44539 Chara braunii HOM05D005045 ORTHO05D006386 1.6e-210 737.6 1277 37.7
MBI07_g27366_MAGBIO Magnolia biondii HOM05D005045 ORTHO05D006386 1.6e-202 711.1 558 69.0
SHI26063 Sapria himalayana HOM05D005045 ORTHO05D006386 6.2e-194 682.6 735 54.3
Lj6C381G5 Lonicera japonica HOM05D005045 ORTHO05D006386 1.9e-182 644.4 593 61.4
MCO01G132 Micromonas commoda HOM05D005045 ORTHO05D006386 7.9e-165 585.9 1384 32.6
BcaB01g04007 Brassica carinata HOM05D005045 ORTHO05D006386 1.1e-155 555.4 394 78.9
CSS0025820 Camellia sinensis var. sinensis HOM05D005045 ORTHO05D006386 4.3e-155 553.5 350 80.6
BcaNung07125 Brassica carinata HOM05D005045 ORTHO05D006386 9.3e-150 535.8 322 89.1
arahy.Tifrunner.gnm1.ann1.KK4CMR Arachis hypogaea HOM05D005045 ORTHO05D006386 3.3e-147 527.3 436 66.3
AUR62018556 Chenopodium quinoa HOM05D005045 ORTHO05D006386 4.3e-147 526.9 375 72.5
Cre03.g192550 Chlamydomonas reinhardtii HOM05D005045 ORTHO05D006386 3.0e-140 504.2 1389 29.4
AUR62020862 Chenopodium quinoa HOM05D005045 ORTHO05D006386 1.1e-139 502.3 431 64.0
Aqoxy430s001 Aquilegia oxysepala HOM05D005045 ORTHO05D006386 2.4e-137 494.6 524 55.0
FAN17G1875 Fragaria x ananassa HOM05D005045 ORTHO05D006386 1.1e-134 485.7 296 83.4
PRCOL_00000463 Prasinoderma coloniale HOM05D005045 ORTHO05D006386 1.6e-133 481.9 1339 29.6
Lju912C0T2 Lonicera japonica HOM05D005045 ORTHO05D006386 5.5e-126 456.8 457 57.3
Cfa022909 Carpinus fangiana HOM05D005045 ORTHO05D006386 2.0e-123 448.4 1350 28.6
Ca_16414_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 1.5e-118 432.2 222 95.9
COL.COLO4_20233 Corchorus olitorius HOM05D005045 ORTHO05D006386 8.0e-117 426.4 244 87.7
QL06p025788 Quercus lobata HOM05D005045 ORTHO05D006386 1.1e-113 416.0 264 81.1
unitig_0.g1960 Utricularia gibba HOM05D005045 ORTHO05D006386 6.5e-111 406.8 224 89.7
COL.COLO4_20231 Corchorus olitorius HOM05D005045 ORTHO05D006386 1.7e-106 392.1 853 35.9
AL80U10080 Arabidopsis lyrata HOM05D005045 ORTHO05D006386 1.8e-100 372.1 187 100.0
Ah.04g149400 Amaranthus hybridus HOM05D005045 ORTHO05D006386 4.4e-91 340.9 223 79.4
Ca_16415_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 3.5e-88 331.3 408 49.0
Lj6A381G13 Lonicera japonica HOM05D005045 ORTHO05D006386 3.9e-71 274.6 227 61.7
BcaB01g04008 Brassica carinata HOM05D005045 ORTHO05D006386 2.4e-65 255.4 230 66.5
Nitab4.5_0003358g0100 Nicotiana tabacum HOM05D005045 ORTHO05D006386 5.1e-63 247.7 126 95.2
Nitab4.5_0003358g0090 Nicotiana tabacum HOM05D005045 ORTHO05D006386 4.8e-53 214.5 140 80.7
Actinidia11455 Actinidia chinensis HOM05D005045 ORTHO05D006386 1.1e-49 203.4 139 78.4
Lj6A381G12 Lonicera japonica HOM05D005045 ORTHO05D006386 3.9e-47 194.9 192 54.2
Prupe.1G180400 Prunus persica HOM05D005045 ORTHO05D006386 1.4e-44 186.4 170 58.8
SHI26072 Sapria himalayana HOM05D005045 ORTHO05D006386 7.9e-40 170.6 165 56.4
SHI26076 Sapria himalayana HOM05D005045 ORTHO05D006386 4.8e-37 161.4 87 92.0
Actinidia11457 Actinidia chinensis HOM05D005045 ORTHO05D006386 2.9e-34 152.1 106 75.5
Rhsim02G0061800 Rhododendron simsii HOM05D005045 ORTHO05D006386 2.1e-32 146.0 72 93.1
SHI26068 Sapria himalayana HOM05D005045 ORTHO05D000014 1.0e-31 143.7 173 47.4
BcaC05g28670 Brassica carinata HOM05D005045 ORTHO05D006386 4.5e-27 128.3 77 93.5
SHI26067 Sapria himalayana HOM05D005045 ORTHO05D006386 3.6e-24 118.6 114 54.4
MBI07_g45033_MAGBIO Magnolia biondii HOM05D005045 ORTHO05D006386 1.9e-22 112.8 100 63.0
Lsat_1_v5_gn_2_13081 Lactuca sativa HOM05D005045 ORTHO05D006386 9.7e-22 110.5 64 85.9
Lsat_1_v5_gn_3_72140 Lactuca sativa HOM05D005045 ORTHO05D006386 1.5e-19 103.2 64 76.6
Lsat_1_v5_gn_5_127521 Lactuca sativa HOM05D005045 ORTHO05D006386 7.7e-19 100.9 106 55.7
ECA233G3942 Erigeron canadensis HOM05D005045 ORTHO05D006386 4.4e-14 85.1 260 29.2
Lsat_1_v5_gn_6_56800 Lactuca sativa HOM05D000112 ORTHO05D001918 3.7e-13 82.0 53 73.6
VMungo0331G0368 Vigna mungo HOM05D005045 ORTHO05D006386 2.4e-12 79.3 140 40.0
VMungo0251G0925 Vigna mungo HOM05D005045 ORTHO05D005612 6.9e-12 77.8 86 52.3
QL10p041126 Quercus lobata HOM05D005045 ORTHO05D006386 5.0e-10 71.6 91 49.5
Lsat_1_v5_gn_8_35100 Lactuca sativa HOM05D000324 ORTHO05D010724 4.2e-09 68.6 63 61.9
Lsat_1_v5_gn_4_149801 Lactuca sativa HOM05D000324 ORTHO05D010724 1.0e-07 63.9 61 62.3
Lsat_1_v5_gn_9_35481 Lactuca sativa HOM05D000324 ORTHO05D010724 1.4e-07 63.5 56 66.1
Lsat_1_v5_gn_1_5060 Lactuca sativa HOM05D001876 ORTHO05D002002 2.6e-06 59.3 33 87.9


User provided reference genes

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