Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G21540 Arabidopsis lyrata HOM05D032695 ORTHO05D080217 6.2e-64 247.3 124 100.0
AL1G63000 Arabidopsis lyrata HOM05D032695 ORTHO05D079498 2.7e-19 99.0 57 86.0
AL7G32280 Arabidopsis lyrata HOM05D032695 ORTHO05D079940 3.6e-19 98.6 57 86.0
AL1G37840 Arabidopsis lyrata HOM05D002781 ORTHO05D021411 4.8e-16 88.2 53 84.9
AL5G34940 Arabidopsis lyrata HOM05D002781 ORTHO05D003382 2.4e-15 85.9 52 82.7
AL7G20890 Arabidopsis lyrata HOM05D002781 ORTHO05D003382 4.1e-15 85.1 55 76.4
BcaB01g00260 Brassica carinata HOM05D002781 ORTHO05D003382 4.1e-15 85.1 52 78.8
A09p46610 Brassica napus HOM05D002781 ORTHO05D003382 4.1e-15 85.1 52 78.8
Carub.0005s2052 Capsella rubella HOM05D002781 ORTHO05D003382 4.1e-15 85.1 52 78.8
AT4G31180 Arabidopsis thaliana HOM05D002781 ORTHO05D003382 1.6e-14 83.2 52 78.8
SGA_v2.0_scaffold20G09307 Striga asiatica HOM05D002781 ORTHO05D003382 2.0e-14 82.8 52 78.8
Thhalv10023019m.g Eutrema salsugineum HOM05D002781 ORTHO05D003382 3.5e-14 82.0 55 72.7
THA.LOC104803886 Tarenaya hassleriana HOM05D002781 ORTHO05D003382 3.5e-14 82.0 52 76.9
TAR383G0197 Trochodendron aralioides HOM05D002781 ORTHO05D003382 3.5e-14 82.0 55 70.9
CSS0008198 Camellia sinensis var. sinensis HOM05D002781 ORTHO05D003382 4.5e-14 81.6 52 76.9
Carub.0007s0935 Capsella rubella HOM05D002781 ORTHO05D003382 4.5e-14 81.6 52 75.0
Rhsim07G0113300 Rhododendron simsii HOM05D002781 ORTHO05D003382 4.5e-14 81.6 52 75.0
Rhsim07G0113700 Rhododendron simsii HOM05D002781 ORTHO05D003382 4.5e-14 81.6 52 75.0
MBI13_g33568_MAGBIO Magnolia biondii HOM05D002781 ORTHO05D003382 5.9e-14 81.3 52 75.0
SGA_v2.0_scaffold17G08122 Striga asiatica HOM05D002781 ORTHO05D003382 5.9e-14 81.3 52 76.9
AL6G12900 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 7.7e-14 80.9 48 85.4
CDE02G0432 Ceratophyllum demersum HOM05D002781 ORTHO05D003382 7.7e-14 80.9 55 67.3
Dinv09454 Davidia involucrata HOM05D002781 ORTHO05D003382 7.7e-14 80.9 53 75.5
Sp7g29070 Schrenkiella parvula HOM05D002781 ORTHO05D003382 7.7e-14 80.9 55 72.7
SGA_v2.0_scaffold51G18727 Striga asiatica HOM05D002781 ORTHO05D003382 7.7e-14 80.9 52 76.9
MSTRG.13933 Avicennia marina HOM05D002781 ORTHO05D003382 1.0e-13 80.5 52 73.1
Thhalv10024945m.g Eutrema salsugineum HOM05D002781 ORTHO05D003382 1.0e-13 80.5 55 69.1
Manes.18G112500 Manihot esculenta HOM05D002781 ORTHO05D003382 1.0e-13 80.5 55 72.7
SGA_v2.0_scaffold17G08116 Striga asiatica HOM05D002781 ORTHO05D003382 1.0e-13 80.5 52 75.0
CSS0040336 Camellia sinensis var. sinensis HOM05D002781 ORTHO05D003382 1.3e-13 80.1 52 75.0
Cc11_g01270 Coffea canephora HOM05D002781 ORTHO05D003382 1.3e-13 80.1 52 73.1
MELO3C003651.2 Cucumis melo HOM05D002781 ORTHO05D003382 1.3e-13 80.1 52 73.1
CsaV3_3G046850 Cucumis sativus L. HOM05D002781 ORTHO05D003382 1.3e-13 80.1 52 73.1
Migut.E00796 Erythranthe guttata HOM05D002781 ORTHO05D003382 1.3e-13 80.1 60 63.3
Thhalv10015942m.g Eutrema salsugineum HOM05D002781 ORTHO05D003382 1.3e-13 80.1 55 69.1
Nn4g24942 Nelumbo nucifera HOM05D002781 ORTHO05D003382 1.3e-13 80.1 55 67.3
PGR044G1761 Punica granatum HOM05D002781 ORTHO05D003382 1.3e-13 80.1 52 75.0
BcaNung01536 Brassica carinata HOM05D002781 ORTHO05D003382 1.7e-13 79.7 55 70.9
Manes.02G204300 Manihot esculenta HOM05D002781 ORTHO05D003382 2.2e-13 79.3 55 70.9
SalBow8G0076 Salvia bowleyana HOM05D002781 ORTHO05D003382 2.2e-13 79.3 52 71.2
SGA_v2.0_scaffold63G21766 Striga asiatica HOM05D002781 ORTHO05D003382 2.2e-13 79.3 52 75.0
CiPaw.07G216300 Carya illinoinensis HOM05D002781 ORTHO05D003382 2.9e-13 79.0 52 71.2
Ciclev10004669m.g Citrus clementina HOM05D002781 ORTHO05D003382 2.9e-13 79.0 52 75.0
Oeu014115.1 Olea europaea HOM05D002781 ORTHO05D003382 2.9e-13 79.0 46 80.4
AT4G26870 Arabidopsis thaliana HOM05D002781 ORTHO05D003382 3.8e-13 78.6 55 69.1
BcaNung01331 Brassica carinata HOM05D002781 ORTHO05D003382 3.8e-13 78.6 55 69.1
A01p08930 Brassica napus HOM05D004115 ORTHO05D005004 3.8e-13 78.6 55 69.1
CANSAT78G1421 Cannabis sativa HOM05D002781 ORTHO05D003382 3.8e-13 78.6 52 71.2
ClCG05G017340 Citrullus lanatus HOM05D002781 ORTHO05D003382 3.8e-13 78.6 52 73.1
Migut.E01411 Erythranthe guttata HOM05D002781 ORTHO05D003382 3.8e-13 78.6 52 71.2
PSO017G0307 Papaver somniferum HOM05D002781 ORTHO05D003382 3.8e-13 78.6 52 73.1
PSO478G0309 Papaver somniferum HOM05D002781 ORTHO05D003382 3.8e-13 78.6 52 73.1
Peaxi162Scf00619g00214 Petunia axillaris HOM05D002781 ORTHO05D003382 3.8e-13 78.6 52 71.2
Sabra06G0064900 Salix brachista HOM05D002781 ORTHO05D003382 3.8e-13 78.6 52 75.0
unitig_747.g21377 Utricularia gibba HOM05D002781 ORTHO05D003382 3.8e-13 78.6 52 73.1
BcaC09g51686 Brassica carinata HOM05D004115 ORTHO05D005004 5.0e-13 78.2 59 62.7
CAN.G1921.4 Capsicum annuum HOM05D002781 ORTHO05D003382 5.0e-13 78.2 52 73.1
CARHR239090 Cardamine hirsuta HOM05D002781 ORTHO05D003382 5.0e-13 78.2 52 75.0
CDE09G0887 Ceratophyllum demersum HOM05D002781 ORTHO05D003382 5.0e-13 78.2 55 63.6
Potri.006G085400 Populus trichocarpa HOM05D002781 ORTHO05D003382 5.0e-13 78.2 52 75.0
QL12p029302 Quercus lobata HOM05D002781 ORTHO05D003382 5.0e-13 78.2 52 69.2
Ca_13063_v3 Cicer arietinum L. HOM05D002781 ORTHO05D003382 6.5e-13 77.8 55 65.5
Dinv00780 Davidia involucrata HOM05D000309 ORTHO05D000271 6.5e-13 77.8 52 73.1
MD08G1134400 Malus domestica HOM05D002781 ORTHO05D003382 6.5e-13 77.8 52 71.2
Oeu019276.1 Olea europaea HOM05D002781 ORTHO05D003382 6.5e-13 77.8 46 80.4
SalBow1G0367 Salvia bowleyana HOM05D002781 ORTHO05D003382 6.5e-13 77.8 46 78.3
SalBow1G1421 Salvia bowleyana HOM05D002781 ORTHO05D003382 6.5e-13 77.8 46 78.3
Solyc05g056250.3 Solanum lycopersicum HOM05D002781 ORTHO05D003382 6.5e-13 77.8 52 71.2
TAR626G1626 Trochodendron aralioides HOM05D002781 ORTHO05D003382 6.5e-13 77.8 55 65.5
Actinidia03329 Actinidia chinensis HOM05D002781 ORTHO05D003382 8.5e-13 77.4 52 69.2
Actinidia25730 Actinidia chinensis HOM05D002781 ORTHO05D003382 8.5e-13 77.4 52 69.2
AL7G11530 Arabidopsis lyrata HOM05D002781 ORTHO05D003382 8.5e-13 77.4 55 67.3
BolC1t01007H Brassica oleracea HOM05D002781 ORTHO05D003382 8.5e-13 77.4 55 67.3
BraA01t00839Z Brassica rapa HOM05D004115 ORTHO05D005004 8.5e-13 77.4 55 67.3
Gohir.D07G001600 Gossypium hirsutum HOM05D002781 ORTHO05D003382 8.5e-13 77.4 52 71.2
Gorai.001G001300 Gossypium raimondii HOM05D002781 ORTHO05D003382 8.5e-13 77.4 52 71.2
PSO832G2265 Papaver somniferum HOM05D002781 ORTHO05D003382 8.5e-13 77.4 54 68.5
SalBow1G4615 Salvia bowleyana HOM05D002781 ORTHO05D003382 8.5e-13 77.4 46 80.4
Aa31LG2G19130 Aethionema arabicum HOM05D002781 ORTHO05D003382 1.1e-12 77.0 53 73.6
A03p60590 Brassica napus HOM05D004522 ORTHO05D005887 1.1e-12 77.0 55 69.1
C05p23890 Brassica napus HOM05D002781 ORTHO05D003382 1.1e-12 77.0 55 67.3
BolC5t31108H Brassica oleracea HOM05D002781 ORTHO05D003382 1.1e-12 77.0 55 67.3
BolC5t31115H Brassica oleracea HOM05D002781 ORTHO05D003382 1.1e-12 77.0 55 67.3
BraA03t15099Z Brassica rapa HOM05D002781 ORTHO05D003382 1.1e-12 77.0 55 69.1
Cfa013226 Carpinus fangiana HOM05D002781 ORTHO05D003382 1.1e-12 77.0 46 76.1
Haze_21649 Corylus avellana HOM05D002781 ORTHO05D003382 1.1e-12 77.0 46 76.1
FvH4_2g30550 Fragaria vesca HOM05D002781 ORTHO05D003382 1.1e-12 77.0 55 65.5
FAN24G1450 Fragaria x ananassa HOM05D002781 ORTHO05D003382 1.1e-12 77.0 55 65.5
FAN27G0558 Fragaria x ananassa HOM05D002781 ORTHO05D003382 1.1e-12 77.0 55 65.5
HanXRQChr11g0342691 Helianthus annuus HOM05D002781 ORTHO05D003382 1.1e-12 77.0 52 71.2
Lsat_1_v5_gn_1_72341 Lactuca sativa HOM05D002781 ORTHO05D003382 1.1e-12 77.0 52 69.2
Lsat_1_v5_gn_5_33240 Lactuca sativa HOM05D002781 ORTHO05D003382 1.1e-12 77.0 55 63.6
Lj6A614T28 Lonicera japonica HOM05D002781 ORTHO05D003382 1.1e-12 77.0 52 69.2
QL12p029213 Quercus lobata HOM05D002781 ORTHO05D003382 1.1e-12 77.0 52 67.3
RcHm_v2.0_Chr6g0312531 Rosa chinensis HOM05D002781 ORTHO05D003382 1.1e-12 77.0 55 65.5
vmacro05095 Vaccinium macrocarpon HOM05D002781 ORTHO05D003382 1.1e-12 77.0 51 70.6
COL.COLO4_18646 Corchorus olitorius HOM05D002781 ORTHO05D003382 1.5e-12 76.6 52 69.2
DCAR_027376 Daucus carota HOM05D002781 ORTHO05D003382 1.5e-12 76.6 60 61.7
Duzib168G0624 Durio zibethinus HOM05D002781 ORTHO05D003382 1.5e-12 76.6 52 71.2
Medtr5g028360 Medicago truncatula HOM05D002781 ORTHO05D003382 1.5e-12 76.6 55 63.6
Prupe.1G463800 Prunus persica HOM05D002781 ORTHO05D003382 1.5e-12 76.6 52 65.4
Sopen05g034640 Solanum pennellii HOM05D002781 ORTHO05D003382 1.5e-12 76.6 52 69.2
COL.COLO4_19460 Corchorus olitorius HOM05D002781 ORTHO05D003382 1.9e-12 76.3 55 65.5
ECA248G0538 Erigeron canadensis HOM05D002781 ORTHO05D003382 1.9e-12 76.3 52 69.2
QL12p029110 Quercus lobata HOM05D002781 ORTHO05D003382 1.9e-12 76.3 52 67.3
CAN.G786.5 Capsicum annuum HOM05D002781 ORTHO05D003382 2.5e-12 75.9 46 78.3
Ca_25166_v3 Cicer arietinum L. HOM05D002781 ORTHO05D003382 2.5e-12 75.9 54 64.8
Psat6g026040 Pisum sativum HOM05D002781 ORTHO05D003382 2.5e-12 75.9 54 64.8
TPR.G30251 Trifolium pratense HOM05D002781 ORTHO05D003382 2.5e-12 75.9 54 64.8
TPR.G38912 Trifolium pratense HOM05D002781 ORTHO05D003382 2.5e-12 75.9 54 64.8
Thhalv10023162m.g Eutrema salsugineum HOM05D002781 ORTHO05D003382 3.2e-12 75.5 59 61.0
Medtr1g014140 Medicago truncatula HOM05D002781 ORTHO05D003382 3.2e-12 75.5 54 64.8
Thecc.09G000700 Theobroma cacao HOM05D002781 ORTHO05D003382 3.2e-12 75.5 52 69.2
arahy.Tifrunner.gnm1.ann1.FW1LZ6 Arachis hypogaea HOM05D002781 ORTHO05D003382 4.2e-12 75.1 54 64.8
FAN20G1456 Fragaria x ananassa HOM05D002781 ORTHO05D003382 4.2e-12 75.1 55 63.6
Gohir.A07G001200 Gossypium hirsutum HOM05D002781 ORTHO05D003382 4.2e-12 75.1 51 68.6
Prupe.4G141600 Prunus persica HOM05D002781 ORTHO05D003382 4.2e-12 75.1 52 67.3
Hund22584 Selenicereus undatus HOM05D002781 ORTHO05D003382 4.2e-12 75.1 59 59.3
RcHm_v2.0_Chr6g0312361 Rosa chinensis HOM05D002781 ORTHO05D021411 5.5e-12 74.7 49 73.5
arahy.Tifrunner.gnm1.ann1.VR4H6N Arachis hypogaea HOM05D002781 ORTHO05D003382 7.2e-12 74.3 46 73.9
CARHR112510 Cardamine hirsuta HOM05D002781 ORTHO05D003382 7.2e-12 74.3 55 65.5
Eucgr.K02027 Eucalyptus grandis HOM05D002781 ORTHO05D003382 7.2e-12 74.3 52 67.3
Glyma.17G223600 Glycine max HOM05D002781 ORTHO05D003382 7.2e-12 74.3 54 63.0
Prupe.8G055000 Prunus persica HOM05D002781 ORTHO05D003382 7.2e-12 74.3 52 67.3
C07p58490 Brassica napus HOM05D004522 ORTHO05D005887 9.4e-12 73.9 55 63.6
BolC7t46304H Brassica oleracea HOM05D004522 ORTHO05D005887 9.4e-12 73.9 55 63.6
Lalb_Chr04g0248401 Lupinus albus HOM05D002781 ORTHO05D003382 9.4e-12 73.9 55 61.8
Os02g0686400 Oryza sativa ssp. japonica HOM05D002781 ORTHO05D003382 9.4e-12 73.9 59 55.9
Atru.chr7.2704 Acer truncatum HOM05D002781 ORTHO05D003382 1.2e-11 73.6 52 71.2
Aa31LG10G520 Aethionema arabicum HOM05D002781 ORTHO05D003382 1.2e-11 73.6 55 63.6
Aqoxy4G02333 Aquilegia oxysepala HOM05D002781 ORTHO05D003382 1.2e-11 73.6 55 63.6
COL.COLO4_25680 Corchorus olitorius HOM05D002781 ORTHO05D003382 1.2e-11 73.6 46 73.9
Lj5g0001123 Lotus japonicus HOM05D002781 ORTHO05D003382 1.2e-11 73.6 52 65.4
Lalb_Chr10g0107001 Lupinus albus HOM05D002781 ORTHO05D003382 1.2e-11 73.6 55 61.8
Nitab4.5_0000080g0320 Nicotiana tabacum HOM05D002781 ORTHO05D003382 1.2e-11 73.6 43 79.1
Nitab4.5_0001449g0030 Nicotiana tabacum HOM05D002781 ORTHO05D003382 1.2e-11 73.6 43 79.1
BcaC09g51901 Brassica carinata HOM05D002781 ORTHO05D003382 1.6e-11 73.2 55 65.5
A01p07050 Brassica napus HOM05D002781 ORTHO05D003382 1.6e-11 73.2 55 65.5
C01p07800 Brassica napus HOM05D002781 ORTHO05D003382 1.6e-11 73.2 55 65.5
BolC1t00766H Brassica oleracea HOM05D002781 ORTHO05D003382 1.6e-11 73.2 55 65.5
BraA01t00657Z Brassica rapa HOM05D002781 ORTHO05D003382 1.6e-11 73.2 55 65.5
Thecc.02G023900 Theobroma cacao HOM05D002781 ORTHO05D003382 1.6e-11 73.2 52 65.4
GSVIVG01035583001 Vitis vinifera HOM05D002781 ORTHO05D003382 1.6e-11 73.2 52 65.4
Zm00001eb338990 Zea mays HOM05D002781 ORTHO05D003382 1.6e-11 73.2 59 55.9
Phvul.001G030000 Phaseolus vulgaris HOM05D002781 ORTHO05D003382 2.1e-11 72.8 54 61.1
Sed0013692 Sechium edule HOM05D002781 ORTHO05D003382 2.1e-11 72.8 52 65.4
VMungo0647G0806 Vigna mungo HOM05D002781 ORTHO05D003382 2.1e-11 72.8 54 61.1
RcHm_v2.0_Chr6g0278871 Rosa chinensis HOM05D002781 ORTHO05D003382 2.7e-11 72.4 55 60.0
Sed0018818 Sechium edule HOM05D002781 ORTHO05D003382 2.7e-11 72.4 52 63.5
Ah.13g073200 Amaranthus hybridus HOM05D002781 ORTHO05D003382 4.7e-11 71.6 52 61.5
TWI34G0804 Tripterygium wilfordii HOM05D002781 ORTHO05D003382 4.7e-11 71.6 52 65.4
SEGI_02968 Sequoiadendron giganteum HOM05D002781 ORTHO05D003382 6.1e-11 71.2 52 65.4
HPP92_010332 Vanilla planifolia HOM05D002781 ORTHO05D003382 6.1e-11 71.2 60 53.3
Zm00001eb231430 Zea mays HOM05D002781 ORTHO05D003382 8.0e-11 70.9 52 59.6
ATR0665G581 Amborella trichopoda HOM05D002781 ORTHO05D003382 1.0e-10 70.5 79 45.6
arahy.Tifrunner.gnm1.ann1.4T50W5 Arachis hypogaea HOM05D002781 ORTHO05D003382 1.0e-10 70.5 46 71.7
TWI63G0346 Tripterygium wilfordii HOM05D002781 ORTHO05D003382 1.0e-10 70.5 52 65.4
AUR62023712 Chenopodium quinoa HOM05D002781 ORTHO05D003382 1.4e-10 70.1 52 61.5
COL.COLO4_27085 Corchorus olitorius HOM05D002781 ORTHO05D003382 1.4e-10 70.1 42 76.2
FAN20G0887 Fragaria x ananassa HOM05D002781 ORTHO05D003382 1.4e-10 70.1 52 61.5
SEGI_10721 Sequoiadendron giganteum HOM05D002781 ORTHO05D003382 1.4e-10 70.1 52 63.5
Glyma.14G101500 Glycine max HOM05D002781 ORTHO05D003382 1.8e-10 69.7 54 59.3
AagrBONN_evm.TU.Sc2ySwM_228.801 Anthoceros agrestis HOM05D002781 ORTHO05D003382 2.3e-10 69.3 52 65.4
Carub.0007s0994 Capsella rubella HOM05D002781 ORTHO05D003382 2.3e-10 69.3 52 61.5
ATR0626G153 Amborella trichopoda HOM05D002781 ORTHO05D003382 3.0e-10 68.9 52 61.5
MD15G1113400 Malus domestica HOM05D002781 ORTHO05D003382 4.0e-10 68.6 52 63.5
ATR0618G057 Amborella trichopoda HOM05D002781 ORTHO05D003382 8.8e-10 67.4 52 59.6
EL10Ac3g06163 Beta vulgaris HOM05D002781 ORTHO05D003382 1.2e-09 67.0 52 59.6
AUR62002480 Chenopodium quinoa HOM05D002781 ORTHO05D003382 1.2e-09 67.0 46 65.2
Mapoly0132s0010 Marchantia polymorpha HOM05D002781 ORTHO05D003382 1.2e-09 67.0 52 59.6
FAN24G3093 Fragaria x ananassa HOM05D002781 ORTHO05D003382 1.5e-09 66.6 52 63.5
Lj6A614G27 Lonicera japonica HOM05D002781 ORTHO05D003382 1.5e-09 66.6 58 55.2
Peaxi162Scf02754g00004 Petunia axillaris HOM05D002781 ORTHO05D003382 7.5e-09 64.3 48 60.4
unitig_0.g2193 Utricularia gibba HOM05D002781 ORTHO05D003382 9.8e-09 63.9 66 54.5
SMO351G0410 Selaginella moellendorffii HOM05D002781 ORTHO05D003382 2.2e-08 62.8 59 49.2
CBR_g19622 Chara braunii HOM05D002781 ORTHO05D003382 2.8e-08 62.4 52 55.8
Pp3c21_10900 Physcomitrium patens HOM05D002781 ORTHO05D003382 2.8e-08 62.4 52 53.8
Aqoxy7G02657 Aquilegia oxysepala HOM05D002781 ORTHO05D003382 6.3e-08 61.2 52 61.5
MCO02G405 Micromonas commoda HOM05D002781 ORTHO05D003382 9.2e-07 57.4 53 56.6
CSS0028741 Camellia sinensis var. sinensis HOM05D002781 ORTHO05D003382 2.7e-06 55.8 29 93.1
arahy.Tifrunner.gnm1.ann1.WR8BUK Arachis hypogaea HOM05D002781 ORTHO05D003382 3.5e-06 55.5 36 66.7
C08p28930 Brassica napus HOM05D002781 ORTHO05D003382 3.5e-06 55.5 29 89.7
BolC8t50495H Brassica oleracea HOM05D002781 ORTHO05D003382 3.5e-06 55.5 29 89.7
Rhsim07G0171800 Rhododendron simsii HOM05D002781 ORTHO05D003382 3.5e-06 55.5 29 89.7
FAN27G2211 Fragaria x ananassa HOM05D002781 ORTHO05D003382 4.5e-06 55.1 43 55.8


User provided reference genes

Program Settings