Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G17960 Arabidopsis lyrata HOM05D004712 ORTHO05D005306 8.0e-202 706.8 343 100.0
AT2G25910 Arabidopsis thaliana HOM05D004712 ORTHO05D005306 3.8e-196 688.0 343 97.7
Sp4g05810 Schrenkiella parvula HOM05D004712 ORTHO05D005306 2.0e-192 675.6 343 95.6
BcaB06g29616 Brassica carinata HOM05D004712 ORTHO05D005306 6.3e-191 670.6 343 94.8
CARHR115280 Cardamine hirsuta HOM05D004712 ORTHO05D005306 1.8e-190 669.1 342 94.7
Thhalv10002033m.g Eutrema salsugineum HOM05D004712 ORTHO05D005306 2.4e-190 668.7 343 94.8
A04p20130 Brassica napus HOM05D004712 ORTHO05D005306 5.3e-190 667.5 344 94.8
BraA04t17594Z Brassica rapa HOM05D004712 ORTHO05D005306 5.3e-190 667.5 344 94.8
C04p55830 Brassica napus HOM05D004712 ORTHO05D005306 1.2e-189 666.4 344 94.5
BcaC02g08320 Brassica carinata HOM05D004712 ORTHO05D005306 1.0e-188 663.3 344 94.2
BolC4t27113H Brassica oleracea HOM05D004712 ORTHO05D005306 1.0e-188 663.3 344 94.2
Aa31LG5G9770 Aethionema arabicum HOM05D004712 ORTHO05D005306 5.9e-181 637.5 354 87.9
THA.LOC104803739 Tarenaya hassleriana HOM05D004712 ORTHO05D005306 3.8e-172 608.2 342 84.8
GSVIVG01035336001 Vitis vinifera HOM05D004712 ORTHO05D005306 4.6e-157 558.1 341 77.7
QL02p001773 Quercus lobata HOM05D004712 ORTHO05D005306 3.0e-156 555.4 344 78.5
Thecc.09G050100 Theobroma cacao HOM05D004712 ORTHO05D005306 9.5e-155 550.4 343 77.8
Dinv23416 Davidia involucrata HOM05D004712 ORTHO05D005306 2.8e-154 548.9 341 76.2
Prupe.1G416100 Prunus persica HOM05D004712 ORTHO05D005306 5.8e-152 541.2 341 76.0
Ciclev10008867m.g Citrus clementina HOM05D004712 ORTHO05D005306 8.3e-151 537.3 339 74.9
Atru.chr7.2032 Acer truncatum HOM05D004712 ORTHO05D005306 1.1e-150 537.0 324 78.1
Duzib168G2010 Durio zibethinus HOM05D004712 ORTHO05D005306 1.4e-150 536.6 346 76.0
Manes.03G046000 Manihot esculenta HOM05D004712 ORTHO05D005306 3.2e-150 535.4 345 75.9
Potri.018G058900 Populus trichocarpa HOM05D004712 ORTHO05D005306 4.1e-150 535.0 341 75.1
COL.COLO4_21017 Corchorus olitorius HOM05D004712 ORTHO05D005306 5.4e-150 534.6 323 78.3
Hund03367 Selenicereus undatus HOM05D004712 ORTHO05D005306 5.4e-150 534.6 341 76.2
TAR624G0834 Trochodendron aralioides HOM05D004712 ORTHO05D005306 5.4e-150 534.6 339 75.2
Gohir.D05G046000 Gossypium hirsutum HOM05D004712 ORTHO05D005306 1.2e-149 533.5 343 74.6
Cc08_g10100 Coffea canephora HOM05D004712 ORTHO05D005306 6.0e-149 531.2 338 73.7
Gohir.A05G044400 Gossypium hirsutum HOM05D004712 ORTHO05D005306 6.0e-149 531.2 336 75.0
AUR62009206 Chenopodium quinoa HOM05D004712 ORTHO05D005306 1.3e-148 530.0 341 74.2
Aqoxy7G03946 Aquilegia oxysepala HOM05D004712 ORTHO05D005306 3.0e-148 528.9 323 76.8
CANSAT25G2372 Cannabis sativa HOM05D004712 ORTHO05D005306 3.0e-148 528.9 341 74.5
Nn6g35377 Nelumbo nucifera HOM05D004712 ORTHO05D005306 8.6e-148 527.3 339 75.2
Peaxi162Scf00840g00117 Petunia axillaris HOM05D004712 ORTHO05D005306 1.1e-147 526.9 343 73.8
Nn6g35381 Nelumbo nucifera HOM05D004712 ORTHO05D005306 2.5e-147 525.8 346 73.4
Hma1.2p1_1266F.1_g271360 Hydrangea macrophylla HOM05D004712 ORTHO05D005306 7.3e-147 524.2 311 79.7
MD08G1074400 Malus domestica HOM05D004712 ORTHO05D005306 7.3e-147 524.2 341 74.2
Potri.006G234000 Populus trichocarpa HOM05D004712 ORTHO05D005306 7.3e-147 524.2 340 73.8
Phvul.001G032800 Phaseolus vulgaris HOM05D004712 ORTHO05D005306 9.5e-147 523.9 348 73.0
RcHm_v2.0_Chr6g0310381 Rosa chinensis HOM05D004712 ORTHO05D005306 2.1e-146 522.7 341 73.3
CiPaw.15G042700 Carya illinoinensis HOM05D004712 ORTHO05D005306 2.8e-146 522.3 341 74.2
SalBow4G3242 Salvia bowleyana HOM05D004712 ORTHO05D005306 2.8e-146 522.3 339 73.7
Ca_13194_v3 Cicer arietinum L. HOM05D004712 ORTHO05D005306 6.2e-146 521.2 340 72.9
Duzib150G0899 Durio zibethinus HOM05D004712 ORTHO05D005306 8.1e-146 520.8 342 74.0
TWI63G0904 Tripterygium wilfordii HOM05D004712 ORTHO05D005306 8.1e-146 520.8 339 73.5
EL10Ac2g03950 Beta vulgaris HOM05D004712 ORTHO05D005306 1.8e-145 519.6 341 73.6
Lalb_Chr22g0355941 Lupinus albus HOM05D004712 ORTHO05D005306 1.8e-145 519.6 347 71.8
CsaV3_2G025770 Cucumis sativus L. HOM05D004712 ORTHO05D005306 6.8e-145 517.7 341 71.6
Glyma.14G091700 Glycine max HOM05D004712 ORTHO05D005306 6.8e-145 517.7 345 73.0
Migut.A00161 Erythranthe guttata HOM05D004712 ORTHO05D005306 8.9e-145 517.3 340 72.6
ClCG08G016850 Citrullus lanatus HOM05D004712 ORTHO05D005306 1.2e-144 516.9 341 71.3
Glyma.17G231700 Glycine max HOM05D004712 ORTHO05D005306 4.4e-144 515.0 344 72.4
Psat6g019200 Pisum sativum HOM05D004712 ORTHO05D005306 5.8e-144 514.6 334 72.8
FAN20G0488 Fragaria x ananassa HOM05D004712 ORTHO05D005306 9.9e-144 513.8 331 73.4
FAN27G0349 Fragaria x ananassa HOM05D004712 ORTHO05D005306 9.9e-144 513.8 331 73.1
FvH4_2g32310 Fragaria vesca HOM05D004712 ORTHO05D005306 2.2e-143 512.7 331 73.4
HanXRQChr17g0538901 Helianthus annuus HOM05D004712 ORTHO05D005306 2.9e-143 512.3 341 71.8
Lj5g0015176 Lotus japonicus HOM05D004712 ORTHO05D005306 4.9e-143 511.5 339 73.2
GSVIVG01016906001 Vitis vinifera HOM05D004712 ORTHO05D005306 6.4e-143 511.1 339 73.5
CSS0042817 Camellia sinensis var. sinensis HOM05D004712 ORTHO05D005306 1.9e-142 509.6 326 75.8
ECA246G0363 Erigeron canadensis HOM05D004712 ORTHO05D005306 2.4e-142 509.2 341 72.4
Sc09g0009600 Simmondsia chinensis HOM05D004712 ORTHO05D005306 2.4e-142 509.2 341 71.6
TPR.G13042 Trifolium pratense HOM05D004712 ORTHO05D005306 3.2e-142 508.8 344 71.2
FAN24G2925 Fragaria x ananassa HOM05D004712 ORTHO05D005306 5.4e-142 508.1 331 73.4
QL05p017273 Quercus lobata HOM05D004712 ORTHO05D005306 5.4e-142 508.1 339 72.3
Solyc08g065880.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 5.4e-142 508.1 331 71.6
Sabra06G0182200 Salix brachista HOM05D004712 ORTHO05D005306 7.1e-142 507.7 341 73.0
Sopen08g019580 Solanum pennellii HOM05D004712 ORTHO05D005306 7.1e-142 507.7 331 71.6
DCAR_004451 Daucus carota HOM05D004712 ORTHO05D005306 9.2e-142 507.3 342 71.9
Haze_18228 Corylus avellana HOM05D004712 ORTHO05D005306 1.2e-141 506.9 341 73.9
VMungo0647G0552 Vigna mungo HOM05D004712 ORTHO05D005306 2.1e-141 506.1 348 71.8
Actinidia21731 Actinidia chinensis HOM05D004712 ORTHO05D005306 3.5e-141 505.4 340 71.2
CSS0005003 Camellia sinensis var. sinensis HOM05D004712 ORTHO05D005306 3.5e-141 505.4 340 71.2
FAN15G0413 Fragaria x ananassa HOM05D004712 ORTHO05D005306 3.5e-141 505.4 331 72.8
AUR62040203 Chenopodium quinoa HOM05D004712 ORTHO05D005306 1.3e-140 503.4 341 71.6
PSO210G7282 Papaver somniferum HOM05D004712 ORTHO05D005306 1.3e-140 503.4 329 72.3
Sabra18G0050600 Salix brachista HOM05D004712 ORTHO05D005306 1.3e-140 503.4 352 70.2
PSO210G0832 Papaver somniferum HOM05D004712 ORTHO05D005306 1.7e-140 503.1 309 75.7
QL05p017569 Quercus lobata HOM05D004712 ORTHO05D005306 1.7e-140 503.1 339 72.0
Medtr1g016970 Medicago truncatula HOM05D004712 ORTHO05D005306 9.6e-139 497.3 339 70.2
Lsat_1_v5_gn_3_27140 Lactuca sativa HOM05D004712 ORTHO05D005306 1.8e-137 493.0 310 74.5
Nitab4.5_0005029g0040 Nicotiana tabacum HOM05D004712 ORTHO05D005306 4.0e-137 491.9 339 70.2
ATR0789G022 Amborella trichopoda HOM05D004712 ORTHO05D005306 9.0e-137 490.7 339 70.2
Nitab4.5_0000359g0220 Nicotiana tabacum HOM05D004712 ORTHO05D005306 1.2e-136 490.3 339 70.2
PGR031G0938 Punica granatum HOM05D004712 ORTHO05D005306 2.0e-136 489.6 311 73.3
arahy.Tifrunner.gnm1.ann1.QZ1T53 Arachis hypogaea HOM05D004712 ORTHO05D005306 2.6e-136 489.2 338 69.5
TWI34G1658 Tripterygium wilfordii HOM05D004712 ORTHO05D005306 3.4e-136 488.8 323 73.1
arahy.Tifrunner.gnm1.ann1.289CQF Arachis hypogaea HOM05D004712 ORTHO05D005306 1.3e-135 486.9 338 69.5
Rhsim08G0230100 Rhododendron simsii HOM05D004712 ORTHO05D005306 1.7e-135 486.5 388 62.6
Cfa017921 Carpinus fangiana HOM05D004712 ORTHO05D005306 1.4e-134 483.4 341 69.5
MELO3C010771.2 Cucumis melo HOM05D004712 ORTHO05D005306 4.2e-134 481.9 319 71.5
Gorai.009G047400 Gossypium raimondii HOM05D004712 ORTHO05D005306 4.2e-134 481.9 317 73.5
SEGI_23712 Sequoiadendron giganteum HOM05D004712 ORTHO05D005306 9.3e-134 480.7 326 70.9
Os01g0566900 Oryza sativa ssp. japonica HOM05D004712 ORTHO05D005306 2.7e-133 479.2 324 69.4
HPP92_009150 Vanilla planifolia HOM05D004712 ORTHO05D005306 7.3e-131 471.1 344 65.1
Rhsim12G0204300 Rhododendron simsii HOM05D004712 ORTHO05D005306 1.6e-130 469.9 341 65.7
PGSC0003DMG401002514 Solanum tuberosum HOM05D004712 ORTHO05D005306 4.8e-130 468.4 341 65.4
Peaxi162Scf00038g01243 Petunia axillaris HOM05D004712 ORTHO05D005306 4.0e-129 465.3 341 66.6
CAN.G20.6 Capsicum annuum HOM05D004712 ORTHO05D005306 5.3e-129 464.9 301 72.1
Nitab4.5_0005661g0020 Nicotiana tabacum HOM05D004712 ORTHO05D005306 1.2e-128 463.8 341 66.6
Zm00001eb159970 Zea mays HOM05D004712 ORTHO05D005306 1.7e-127 459.9 318 69.5
Zm00001eb356940 Zea mays HOM05D004712 ORTHO05D005306 2.2e-127 459.5 323 69.0
Ah.10g034640 Amaranthus hybridus HOM05D004712 ORTHO05D005306 3.8e-127 458.8 363 62.8
Gohir.D03G057300 Gossypium hirsutum HOM05D004712 ORTHO05D005306 4.9e-127 458.4 341 64.5
Lj7A695G32 Lonicera japonica HOM05D004712 ORTHO05D005306 4.2e-126 455.3 320 71.2
vmacro05273 Vaccinium macrocarpon HOM05D004712 ORTHO05D005306 5.4e-126 454.9 335 68.1
AUR62040198 Chenopodium quinoa HOM05D004712 ORTHO05D005306 2.7e-125 452.6 321 69.8
Gohir.A02G116301 Gossypium hirsutum HOM05D004712 ORTHO05D005306 3.5e-125 452.2 308 68.5
MBI04_g12189_MAGBIO Magnolia biondii HOM05D004712 ORTHO05D005306 3.5e-125 452.2 355 64.5
Carub.0004s0573 Capsella rubella HOM05D004712 ORTHO05D005306 1.1e-123 447.2 225 96.4
Eucgr.C00628 Eucalyptus grandis HOM05D004712 ORTHO05D005306 9.0e-121 437.6 267 78.3
AagrBONN_evm.TU.Sc2ySwM_228.3302 Anthoceros agrestis HOM05D004712 ORTHO05D005306 2.6e-120 436.0 324 64.8
Sed0015351 Sechium edule HOM05D004712 ORTHO05D005306 2.6e-120 436.0 339 62.5
MD15G1062100 Malus domestica HOM05D004712 ORTHO05D005306 4.5e-120 435.3 341 63.9
Mapoly0072s0029 Marchantia polymorpha HOM05D004712 ORTHO05D005306 2.9e-119 432.6 342 61.7
Nitab4.5_0010821g0020 Nicotiana tabacum HOM05D004712 ORTHO05D005306 2.9e-119 432.6 320 65.9
Dinv30410 Davidia involucrata HOM05D004712 ORTHO05D005306 7.1e-118 427.9 265 77.4
Solyc03g121250.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 2.3e-116 422.9 285 69.1
AUR62031977 Chenopodium quinoa HOM05D004712 ORTHO05D005306 3.0e-116 422.5 305 64.6
Lj5A50G64 Lonicera japonica HOM05D004712 ORTHO05D005306 3.0e-116 422.5 290 69.7
Manes.16G077100 Manihot esculenta HOM05D004712 ORTHO05D005306 1.2e-112 410.6 247 80.6
SMO174G0103 Selaginella moellendorffii HOM05D004712 ORTHO05D005306 1.0e-111 407.5 317 61.5
Pp3c15_8210 Physcomitrium patens HOM05D004712 ORTHO05D005306 6.0e-109 398.3 309 62.5
Sopen03g040060 Solanum pennellii HOM05D004712 ORTHO05D005306 9.7e-107 391.0 289 65.4
Sopen01g026340 Solanum pennellii HOM05D000014 ORTHO05D005306 6.3e-106 388.3 315 60.6
vmacro17006 Vaccinium macrocarpon HOM05D004712 ORTHO05D005306 9.1e-97 357.8 407 48.6
Glyma.04G087900 Glycine max HOM05D004712 ORTHO05D005306 8.8e-92 341.3 307 58.6
AUR62022272 Chenopodium quinoa HOM05D004712 ORTHO05D005306 1.1e-89 334.3 227 67.0
COL.COLO4_30565 Corchorus olitorius HOM05D004712 ORTHO05D005306 1.4e-89 334.0 260 63.5
CAN.G1143.35 Capsicum annuum HOM05D004712 ORTHO05D005306 5.2e-84 315.5 243 61.7
Pp3c9_13080 Physcomitrium patens HOM05D004712 ORTHO05D005306 7.0e-81 305.1 247 59.5
unitig_748.g8268 Utricularia gibba HOM05D004712 ORTHO05D005306 7.7e-80 301.6 306 51.3
unitig_32.g10885 Utricularia gibba HOM05D004712 ORTHO05D005306 1.4e-73 280.8 270 54.4
Cpa.g.sc1834.1 Carica papaya HOM05D004712 ORTHO05D005306 2.2e-71 273.5 174 74.7
Solyc01g060200.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 7.2e-70 268.5 306 46.7
CDE06G1081 Ceratophyllum demersum HOM05D004712 ORTHO05D005306 6.1e-69 265.4 170 74.1
Gorai.003G060400 Gossypium raimondii HOM05D004712 ORTHO05D005306 4.5e-56 222.6 176 62.5
SGA_v2.0_scaffold88G27214 Striga asiatica HOM05D004712 ORTHO05D005306 3.6e-53 213.0 141 69.5
Cpa.g.c30793.3 Carica papaya HOM05D004712 ORTHO05D005306 1.4e-52 211.1 132 75.8
CDE06G1637 Ceratophyllum demersum HOM05D004712 ORTHO05D005306 3.3e-46 189.9 118 75.4
Glyma.20G062400 Glycine max HOM05D004712 ORTHO05D005306 9.9e-35 151.8 96 75.0
ATR0626G141 Amborella trichopoda HOM05D004712 ORTHO05D005306 1.2e-29 134.8 169 48.5
Cpa.g.sc131.9 Carica papaya HOM05D004712 ORTHO05D005306 1.7e-23 114.4 98 56.1
Cpa.g.sc131.11 Carica papaya HOM05D004712 ORTHO05D005306 3.9e-23 113.2 64 79.7
Hma1.2p1_0051F.1_g029750 Hydrangea macrophylla HOM05D004712 ORTHO05D005306 3.9e-23 113.2 66 77.3
Cpa.g.sc131.8 Carica papaya HOM05D004712 ORTHO05D005306 1.5e-19 101.3 70 72.9
Cc04_g02330 Coffea canephora HOM05D004712 ORTHO05D005306 9.3e-17 92.0 158 35.4
COL.COLO4_30564 Corchorus olitorius HOM05D004712 ORTHO05D005306 3.9e-15 86.7 56 73.2
TAR636G2080 Trochodendron aralioides HOM05D000850 ORTHO05D000266 8.1e-13 79.0 80 51.2
Cre03.g152425 Chlamydomonas reinhardtii HOM05D004712 ORTHO05D005306 3.1e-12 77.0 198 29.8
MSTRG.22613 Avicennia marina HOM05D004712 ORTHO05D005306 6.9e-12 75.9 67 52.2
Cre03.g152400 Chlamydomonas reinhardtii HOM05D015906 ORTHO05D028597 3.4e-11 73.6 196 29.6
MCO09G663 Micromonas commoda HOM05D015906 ORTHO05D005306 2.9e-10 70.5 184 27.7
CARHR290840 Cardamine hirsuta HOM05D006128 ORTHO05D007466 3.8e-10 70.1 58 63.8
MCO15G238 Micromonas commoda HOM05D015906 ORTHO05D005306 9.3e-09 65.5 95 34.7
Cre03.g205921 Chlamydomonas reinhardtii HOM05D015906 ORTHO05D005306 1.2e-08 65.1 213 26.8
Carub.0004s0574 Capsella rubella HOM05D006128 ORTHO05D007466 1.3e-07 61.6 40 67.5
AL4G17994 Arabidopsis lyrata HOM05D006128 ORTHO05D007466 1.8e-07 61.2 36 80.6
Nn4g24691 Nelumbo nucifera HOM05D004712 ORTHO05D005306 1.8e-07 61.2 48 60.4
FAN23G2178 Fragaria x ananassa HOM05D002024 ORTHO05D004352 2.3e-07 60.8 154 28.6
AT2G25920 Arabidopsis thaliana HOM05D006128 ORTHO05D007466 5.1e-07 59.7 36 77.8
Cre03.g205300 Chlamydomonas reinhardtii HOM05D062317 ORTHO05D140869 1.5e-06 58.2 180 29.4
EL10Ac2g04414 Beta vulgaris HOM05D002024 ORTHO05D004352 2.5e-06 57.4 156 25.6
SMO351G0038 Selaginella moellendorffii HOM05D002024 ORTHO05D004352 2.5e-06 57.4 169 31.4
EL10Ac9g21163 Beta vulgaris HOM05D004712 ORTHO05D005306 3.3e-06 57.0 78 43.6
FAN26G3161 Fragaria x ananassa HOM05D002024 ORTHO05D004352 4.3e-06 56.6 153 26.1
FvH4_1g28500 Fragaria vesca HOM05D002024 ORTHO05D004352 5.6e-06 56.2 153 26.1
FAN19G0777 Fragaria x ananassa HOM05D002024 ORTHO05D004352 5.6e-06 56.2 153 26.1
Lsat_1_v5_gn_6_31721 Lactuca sativa HOM05D002024 ORTHO05D004352 7.4e-06 55.8 152 25.7
ATR0697G132 Amborella trichopoda HOM05D002024 ORTHO05D004352 9.6e-06 55.5 152 27.0
AT1G54440 Arabidopsis thaliana HOM05D002024 ORTHO05D004352 9.6e-06 55.5 153 26.8


User provided reference genes

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