Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G17700 Arabidopsis lyrata HOM05D004433 ORTHO05D005251 0.0e+00 1147.1 585 100.0
AT2G25870 Arabidopsis thaliana HOM05D004433 ORTHO05D005251 0.0e+00 1084.3 585 94.4
Carub.0004s0569 Capsella rubella HOM05D004433 ORTHO05D005251 4.5e-306 1053.9 586 92.7
CARHR115360 Cardamine hirsuta HOM05D004433 ORTHO05D005251 3.5e-298 1027.7 588 90.1
BcaB06g29638 Brassica carinata HOM05D004433 ORTHO05D005251 5.7e-293 1010.4 602 87.2
Sp4g05710 Schrenkiella parvula HOM05D004433 ORTHO05D005251 4.9e-292 1007.3 598 88.3
BcaB06g29637 Brassica carinata HOM05D004433 ORTHO05D005251 8.3e-292 1006.5 593 88.0
A04p20080 Brassica napus HOM05D004433 ORTHO05D005251 8.3e-292 1006.5 596 88.4
BolC4t27102H Brassica oleracea HOM05D004433 ORTHO05D005251 8.3e-292 1006.5 593 88.0
BraA04t17590Z Brassica rapa HOM05D004433 ORTHO05D005251 8.3e-292 1006.5 595 88.2
Thhalv10001936m.g Eutrema salsugineum HOM05D004433 ORTHO05D005251 3.1e-291 1004.6 599 89.0
C04p55760 Brassica napus HOM05D004433 ORTHO05D005251 1.2e-290 1002.7 593 87.7
Aa31LG5G9810 Aethionema arabicum HOM05D004433 ORTHO05D005251 2.7e-266 921.8 564 86.0
THA.LOC104818595 Tarenaya hassleriana HOM05D004433 ORTHO05D005251 3.3e-248 861.7 597 76.2
RcHm_v2.0_Chr6g0306711 Rosa chinensis HOM05D004433 ORTHO05D005251 1.0e-225 786.9 592 69.3
Eucgr.C00613 Eucalyptus grandis HOM05D004433 ORTHO05D005251 4.8e-223 778.1 507 76.1
FvH4_2g35220 Fragaria vesca HOM05D004433 ORTHO05D005251 2.4e-222 775.8 573 69.6
Cfa013388 Carpinus fangiana HOM05D004433 ORTHO05D005251 3.1e-222 775.4 577 70.9
TAR639G0002 Trochodendron aralioides HOM05D004433 ORTHO05D005251 4.1e-222 775.0 542 72.9
TWI34G1917 Tripterygium wilfordii HOM05D004433 ORTHO05D005251 5.3e-222 774.6 547 71.7
FAN15G1676 Fragaria x ananassa HOM05D004433 ORTHO05D005251 1.7e-220 769.6 591 67.7
Atru.chr7.2050 Acer truncatum HOM05D004433 ORTHO05D005251 3.8e-220 768.5 578 69.4
PGR031G3150 Punica granatum HOM05D004433 ORTHO05D005251 1.9e-219 766.1 574 68.6
CsaV3_3G048450 Cucumis sativus L. HOM05D004433 ORTHO05D005251 5.5e-219 764.6 595 66.2
MELO3C003474.2 Cucumis melo HOM05D004433 ORTHO05D005251 9.3e-219 763.8 596 66.6
CSS0005257 Camellia sinensis var. sinensis HOM05D004433 ORTHO05D005251 1.6e-218 763.1 557 70.4
CSS0005508 Camellia sinensis var. sinensis HOM05D004433 ORTHO05D005251 1.6e-218 763.1 557 70.4
QL12p040912 Quercus lobata HOM05D004433 ORTHO05D005251 1.6e-218 763.1 587 68.0
Duzib150G0295 Durio zibethinus HOM05D004433 ORTHO05D005251 7.9e-218 760.8 544 71.0
CiPaw.08G027400 Carya illinoinensis HOM05D004433 ORTHO05D005251 1.3e-217 760.0 598 67.7
Ciclev10007803m.g Citrus clementina HOM05D004433 ORTHO05D005251 1.8e-217 759.6 599 67.4
ClCG11G015050 Citrullus lanatus HOM05D004433 ORTHO05D005251 2.3e-217 759.2 595 66.7
Sed0005675 Sechium edule HOM05D004433 ORTHO05D005251 3.9e-217 758.4 550 69.8
GSVIVG01035316001 Vitis vinifera HOM05D004433 ORTHO05D005251 2.5e-216 755.7 537 70.9
Dinv27935 Davidia involucrata HOM05D004433 ORTHO05D005251 4.3e-216 755.0 545 71.4
Nitab4.5_0008242g0010 Nicotiana tabacum HOM05D004433 ORTHO05D005251 4.3e-216 755.0 590 68.5
Sopen08g019860 Solanum pennellii HOM05D004433 ORTHO05D005251 4.3e-216 755.0 581 69.0
Solyc08g066180.3 Solanum lycopersicum HOM05D004433 ORTHO05D005251 7.4e-216 754.2 581 68.8
Duzib168G1809 Durio zibethinus HOM05D004433 ORTHO05D005251 9.7e-216 753.8 546 70.1
Oeu019243.1 Olea europaea HOM05D004433 ORTHO05D005251 1.7e-215 753.1 509 73.9
Thecc.09G048300 Theobroma cacao HOM05D004433 ORTHO05D005251 2.8e-215 752.3 543 70.9
Medtr1g007320 Medicago truncatula HOM05D004433 ORTHO05D005251 3.7e-215 751.9 500 75.2
Gohir.D06G090400 Gossypium hirsutum HOM05D004433 ORTHO05D005251 4.8e-215 751.5 546 70.5
Potri.018G057500 Populus trichocarpa HOM05D004433 ORTHO05D005251 8.2e-215 750.7 599 65.3
CANSAT21G1878 Cannabis sativa HOM05D004433 ORTHO05D005251 1.1e-214 750.4 541 71.2
Gohir.A06G091200 Gossypium hirsutum HOM05D004433 ORTHO05D005251 1.1e-214 750.4 569 68.5
arahy.Tifrunner.gnm1.ann1.AK26AV Arachis hypogaea HOM05D004433 ORTHO05D005251 4.1e-214 748.4 603 66.3
Migut.A00179 Erythranthe guttata HOM05D004433 ORTHO05D005251 6.9e-214 747.7 596 66.4
Aqoxy5G01364 Aquilegia oxysepala HOM05D004433 ORTHO05D005251 5.9e-213 744.6 509 72.5
AUR62040221 Chenopodium quinoa HOM05D004433 ORTHO05D005251 1.7e-212 743.0 588 67.0
MD08G1110200 Malus domestica HOM05D004433 ORTHO05D005251 1.7e-212 743.0 578 66.4
AUR62009222 Chenopodium quinoa HOM05D004433 ORTHO05D005251 1.1e-211 740.3 593 66.6
Nn8g39044 Nelumbo nucifera HOM05D004433 ORTHO05D005251 1.1e-211 740.3 579 67.5
Actinidia14688 Actinidia chinensis HOM05D004433 ORTHO05D005251 1.4e-211 740.0 553 70.2
Gorai.010G104100 Gossypium raimondii HOM05D004433 ORTHO05D005251 1.4e-211 740.0 572 67.3
MSTRG.25921 Avicennia marina HOM05D004433 ORTHO05D005251 1.9e-211 739.6 505 72.3
Psat6g036080 Pisum sativum HOM05D004433 ORTHO05D005251 1.9e-211 739.6 506 74.1
Sc23g0005440 Simmondsia chinensis HOM05D004433 ORTHO05D005251 2.5e-211 739.2 579 66.0
CANSAT21G2561 Cannabis sativa HOM05D004433 ORTHO05D005251 5.5e-211 738.0 541 70.4
CAN.G1444.6 Capsicum annuum HOM05D004433 ORTHO05D005251 9.4e-211 737.3 522 72.2
HanXRQChr02g0047921 Helianthus annuus HOM05D004433 ORTHO05D005251 1.2e-210 736.9 521 71.6
Ah.10g034740 Amaranthus hybridus HOM05D004433 ORTHO05D005251 2.1e-210 736.1 584 65.9
Lsat_1_v5_gn_6_7781 Lactuca sativa HOM05D004433 ORTHO05D005251 2.1e-210 736.1 596 64.8
Glyma.14G144100 Glycine max HOM05D004433 ORTHO05D005251 3.6e-210 735.3 587 65.9
Prupe.1G444400 Prunus persica HOM05D004433 ORTHO05D005251 4.7e-210 734.9 580 65.5
Ca_03360_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 7.9e-210 734.2 499 74.5
TPR.G24519 Trifolium pratense HOM05D004433 ORTHO05D005251 1.0e-209 733.8 503 74.0
Lalb_Chr22g0360911 Lupinus albus HOM05D004433 ORTHO05D005251 1.8e-209 733.0 597 65.3
PSO210G3373 Papaver somniferum HOM05D004433 ORTHO05D005251 3.0e-209 732.3 568 66.4
vmacro00182 Vaccinium macrocarpon HOM05D004433 ORTHO05D005251 3.0e-209 732.3 521 71.6
Lj1g0025930 Lotus japonicus HOM05D004433 ORTHO05D005251 3.9e-209 731.9 500 74.0
FAN20G2992 Fragaria x ananassa HOM05D004433 ORTHO05D005251 8.8e-209 730.7 581 66.6
Nitab4.5_0000318g0140 Nicotiana tabacum HOM05D004433 ORTHO05D005251 1.4e-206 723.4 597 65.5
Phvul.001G078300 Phaseolus vulgaris HOM05D004433 ORTHO05D005251 1.8e-206 723.0 593 65.6
ATR0705G146 Amborella trichopoda HOM05D004433 ORTHO05D005251 3.4e-205 718.8 583 64.5
CDE09G0966 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 1.0e-204 717.2 514 70.2
ECA233G5497 Erigeron canadensis HOM05D004433 ORTHO05D005251 5.0e-204 714.9 523 69.0
FAN27G1484 Fragaria x ananassa HOM05D004433 ORTHO05D005251 6.5e-204 714.5 611 62.8
VMungo1383G1648 Vigna mungo HOM05D004433 ORTHO05D005251 8.0e-202 707.6 509 70.5
DCAR_003083 Daucus carota HOM05D004433 ORTHO05D005251 1.0e-201 707.2 548 67.7
arahy.Tifrunner.gnm1.ann1.YGB7WG Arachis hypogaea HOM05D004433 ORTHO05D005251 7.4e-200 701.0 601 63.7
SalBow4G2164 Salvia bowleyana HOM05D004433 ORTHO05D005251 3.1e-198 695.7 595 64.0
SGA_v2.0_scaffold103G30047 Striga asiatica HOM05D004433 ORTHO05D005251 5.9e-197 691.4 664 57.8
COL.COLO4_21003 Corchorus olitorius HOM05D004433 ORTHO05D005251 3.8e-196 688.7 548 67.2
Lj7C697T10 Lonicera japonica HOM05D004433 ORTHO05D005251 1.5e-195 686.8 557 63.2
Peaxi162Scf00699g00520 Petunia axillaris HOM05D004433 ORTHO05D005251 1.6e-194 683.3 541 66.9
Prupe.1G444500 Prunus persica HOM05D004433 ORTHO05D005251 4.7e-194 681.8 537 66.1
MBI04_g07004_MAGBIO Magnolia biondii HOM05D004433 ORTHO05D005251 5.2e-193 678.3 510 67.3
Actinidia18212 Actinidia chinensis HOM05D004433 ORTHO05D005251 1.8e-190 669.8 460 73.5
Manes.03G060700 Manihot esculenta HOM05D004433 ORTHO05D005251 1.7e-188 663.3 502 69.3
Manes.16G073200 Manihot esculenta HOM05D004433 ORTHO05D005251 7.2e-187 657.9 547 64.4
Rhsim11G0049500 Rhododendron simsii HOM05D004433 ORTHO05D005251 1.0e-185 654.1 561 62.2
FvH4_2g35230 Fragaria vesca HOM05D004433 ORTHO05D005251 1.8e-185 653.3 567 61.6
Hund03376 Selenicereus undatus HOM05D004433 ORTHO05D005251 1.3e-183 647.1 459 70.2
EL10Ac2g03971 Beta vulgaris HOM05D004433 ORTHO05D005251 4.1e-182 642.1 578 60.7
Zm00001eb153790 Zea mays HOM05D004433 ORTHO05D005251 2.0e-181 639.8 491 64.0
FAN27G0398 Fragaria x ananassa HOM05D004433 ORTHO05D005251 6.5e-180 634.8 592 57.8
Sabra18G0052000 Salix brachista HOM05D004433 ORTHO05D005251 5.7e-176 621.7 641 54.3
PSO210G0672 Papaver somniferum HOM05D004433 ORTHO05D005251 7.5e-176 621.3 579 58.7
RcHm_v2.0_Chr6g0306701 Rosa chinensis HOM05D004433 ORTHO05D005251 2.2e-175 619.8 570 58.1
MD08G1110300 Malus domestica HOM05D004433 ORTHO05D005251 2.8e-162 576.2 439 66.5
Glyma.17G192300 Glycine max HOM05D004433 ORTHO05D005251 2.9e-159 566.2 472 64.0
Dinv23396 Davidia involucrata HOM05D004433 ORTHO05D005251 6.4e-159 565.1 372 74.7
ATR1159G027 Amborella trichopoda HOM05D004433 ORTHO05D005251 1.1e-158 564.3 559 55.3
Os01g0739400 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 9.2e-158 561.2 440 61.8
FAN15G3540 Fragaria x ananassa HOM05D004433 ORTHO05D005251 8.1e-154 548.1 523 56.6
unitig_32.g11476 Utricularia gibba HOM05D004433 ORTHO05D005251 8.7e-132 474.9 594 48.0
Os02g0227000 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 3.6e-130 469.5 443 52.8
Pp3c15_25010 Physcomitrium patens HOM05D004433 ORTHO05D005251 3.1e-129 466.5 491 50.7
Lj8A567T31 Lonicera japonica HOM05D004433 ORTHO05D005251 5.3e-129 465.7 345 69.0
Zm00001eb239610 Zea mays HOM05D004433 ORTHO05D005251 1.3e-127 461.1 542 47.2
Mapoly0124s0034 Marchantia polymorpha HOM05D004433 ORTHO05D005251 6.0e-125 452.2 499 48.1
Cc08_g09950 Coffea canephora HOM05D004433 ORTHO05D005251 7.6e-120 435.3 423 58.9
Haze_21925 Corylus avellana HOM05D004433 ORTHO05D005251 8.4e-119 431.8 382 64.9
HPP92_005557 Vanilla planifolia HOM05D004433 ORTHO05D005251 1.9e-118 430.6 471 51.4
Oeu008300.1 Olea europaea HOM05D004433 ORTHO05D005251 3.9e-116 422.9 509 49.1
Ciclev10010169m.g Citrus clementina HOM05D004433 ORTHO05D005251 1.4e-110 404.4 456 52.4
CBR_g31496 Chara braunii HOM05D004433 ORTHO05D005251 2.0e-104 384.0 487 44.1
Ca_19223_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 3.9e-100 369.8 267 71.5
Os09g0388400 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 5.5e-94 349.4 283 61.5
Cc08_g09960 Coffea canephora HOM05D004433 ORTHO05D005251 1.4e-84 318.2 204 73.5
Cpa.g.sc7.220 Carica papaya HOM05D004433 ORTHO05D005251 7.5e-75 285.8 173 78.6
HPP92_003623 Vanilla planifolia HOM05D004433 ORTHO05D005251 2.4e-73 280.8 271 55.4
SMO352G0038 Selaginella moellendorffii HOM05D004433 ORTHO05D005251 1.1e-70 271.9 262 50.8
SEGI_35823 Sequoiadendron giganteum HOM05D004433 ORTHO05D005251 8.8e-68 262.3 202 60.9
Cpa.g.sc7.222 Carica papaya HOM05D004433 ORTHO05D005251 3.4e-67 260.4 196 69.9
PRCOL_00001006 Prasinoderma coloniale HOM05D004433 ORTHO05D005251 1.4e-65 255.0 391 38.6
SEGI_12418 Sequoiadendron giganteum HOM05D004433 ORTHO05D005251 2.5e-62 244.2 279 49.5
Potri.006G235301 Populus trichocarpa HOM05D004433 ORTHO05D005251 3.4e-59 233.8 178 65.2
FAN20G0434 Fragaria x ananassa HOM05D004433 ORTHO05D005251 2.8e-58 230.7 273 49.8
MCO02G391 Micromonas commoda HOM05D004433 ORTHO05D005251 8.3e-58 229.2 291 44.0
CDE02G1264 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 1.5e-54 218.4 133 76.7
Hund19490 Selenicereus undatus HOM05D004433 ORTHO05D005251 2.1e-45 188.0 126 72.2
Hma1.2p1_0049F.1_g028280 Hydrangea macrophylla HOM05D004433 ORTHO05D005251 3.1e-44 184.1 113 77.0
Ca_12764_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 5.2e-44 183.3 177 57.1
Cre06.g252150 Chlamydomonas reinhardtii HOM05D004433 ORTHO05D005251 3.5e-40 170.6 272 39.0
Hund19491 Selenicereus undatus HOM05D004433 ORTHO05D005251 2.4e-33 147.9 122 61.5
MCO10G003 Micromonas commoda HOM05D004433 ORTHO05D005251 2.5e-30 137.9 269 34.6
Gohir.A08G152250 Gossypium hirsutum HOM05D004433 ORTHO05D005251 7.3e-30 136.3 122 56.6
Oeu059683.2 Olea europaea HOM05D004433 ORTHO05D005251 1.6e-29 135.2 106 61.3
CDE02G2445 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 1.9e-25 121.7 95 67.4
Cre09.g402997 Chlamydomonas reinhardtii HOM05D004433 ORTHO05D005251 9.3e-25 119.4 120 51.7
Solyc06g011570.3 Solanum lycopersicum HOM05D004433 ORTHO05D005251 3.3e-22 110.9 112 50.9
PRCOL_00006247 Prasinoderma coloniale HOM05D004433 ORTHO05D005251 7.3e-22 109.8 267 31.1
Os09g0393801 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 3.1e-20 104.4 96 54.2
VMungo1215G2735 Vigna mungo HOM05D004433 ORTHO05D005251 6.9e-20 103.2 83 56.6
Os09g0393501 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 1.2e-19 102.4 91 56.0
Sopen06g006790 Solanum pennellii HOM05D004433 ORTHO05D005251 5.8e-19 100.1 88 56.8
Lj8A567T30 Lonicera japonica HOM05D004433 ORTHO05D005251 7.6e-19 99.8 56 87.5
TAR383G0959 Trochodendron aralioides HOM05D004433 ORTHO05D005251 7.6e-19 99.8 232 35.3
SGA_v2.0_scaffold266G46140 Striga asiatica HOM05D004433 ORTHO05D005251 4.2e-17 94.0 57 80.7
RcHm_v2.0_Chr6g0271151 Rosa chinensis HOM05D004433 ORTHO05D005251 2.3e-15 88.2 69 63.8
HPP92_005558 Vanilla planifolia HOM05D004433 ORTHO05D005251 5.1e-15 87.0 54 77.8
RcHm_v2.0_Chr6g0310261 Rosa chinensis HOM05D004433 ORTHO05D005251 3.3e-14 84.3 69 60.9
AT5G38747 Arabidopsis thaliana HOM05D004433 ORTHO05D081644 3.6e-13 80.9 59 69.5
Pp3s32_540 Physcomitrium patens HOM05D004878 ORTHO05D021266 1.2e-11 75.9 273 25.6
Ca_28629_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 2.2e-10 71.6 249 27.3
Ca_29420_v3 Cicer arietinum L. HOM05D003834 ORTHO05D044391 7.1e-09 66.6 109 37.6
TAR625G0121 Trochodendron aralioides HOM05D004433 ORTHO05D005251 1.8e-07 62.0 40 77.5
MD15G1112400 Malus domestica HOM05D004433 ORTHO05D005251 1.5e-06 58.9 36 77.8


User provided reference genes

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