Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G11740 Arabidopsis lyrata HOM05D006551 ORTHO05D008546 5.9e-180 634.0 308 100.0
AT2G22260 Arabidopsis thaliana HOM05D006551 ORTHO05D008546 4.7e-161 571.2 311 90.4
Carub.0004s0140 Capsella rubella HOM05D006551 ORTHO05D008546 2.8e-145 518.8 308 83.4
BraA09t41161Z Brassica rapa HOM05D006551 ORTHO05D008546 2.8e-129 465.7 306 78.8
A09p57680 Brassica napus HOM05D006551 ORTHO05D008546 4.7e-129 464.9 306 78.1
BolC8t51654H Brassica oleracea HOM05D006551 ORTHO05D008546 8.1e-129 464.2 307 77.2
BcaC07g41085 Brassica carinata HOM05D006551 ORTHO05D008546 2.4e-125 452.6 310 75.2
C08p40880 Brassica napus HOM05D006551 ORTHO05D008546 2.4e-125 452.6 310 75.2
BcaC07g41084 Brassica carinata HOM05D006551 ORTHO05D008546 2.0e-119 433.0 281 77.9
CARHR113490 Cardamine hirsuta HOM05D006551 ORTHO05D008546 1.1e-117 427.2 309 72.8
Aa31LG2G12400 Aethionema arabicum HOM05D006551 ORTHO05D008546 5.1e-115 418.3 239 81.6
BcaB08g35054 Brassica carinata HOM05D006551 ORTHO05D008546 2.5e-114 416.0 282 76.6
THA.LOC104815473 Tarenaya hassleriana HOM05D006551 ORTHO05D008546 7.6e-103 377.9 240 75.4
Lalb_Chr20g0119561 Lupinus albus HOM05D006551 ORTHO05D008546 9.6e-98 360.9 239 69.9
Lj6g0027493 Lotus japonicus HOM05D006551 ORTHO05D008546 4.8e-97 358.6 240 70.4
Phvul.006G137400 Phaseolus vulgaris HOM05D006551 ORTHO05D008546 8.1e-97 357.8 239 69.0
Thecc.06G241400 Theobroma cacao HOM05D006551 ORTHO05D008546 1.8e-96 356.7 242 68.6
Medtr2g027110 Medicago truncatula HOM05D006551 ORTHO05D008546 3.1e-96 355.9 233 72.5
Phvul.006G137611 Phaseolus vulgaris HOM05D006551 ORTHO05D008546 5.3e-96 355.1 239 68.6
TPR.G17557 Trifolium pratense HOM05D006551 ORTHO05D008546 1.5e-95 353.6 294 59.9
Duzib160G0007 Durio zibethinus HOM05D006551 ORTHO05D008546 2.6e-95 352.8 239 69.0
Manes.09G083300 Manihot esculenta HOM05D006551 ORTHO05D008546 4.5e-95 352.1 219 73.1
TWI38G1730 Tripterygium wilfordii HOM05D006551 ORTHO05D008546 5.8e-95 351.7 239 69.5
Glyma.09G014800 Glycine max HOM05D006551 ORTHO05D008546 9.9e-95 350.9 240 67.9
Sopen04g007100 Solanum pennellii HOM05D006551 ORTHO05D008546 1.7e-94 350.1 231 69.7
Ca_00765_v3 Cicer arietinum L. HOM05D006551 ORTHO05D008546 2.2e-94 349.7 233 71.2
Potri.006G004500 Populus trichocarpa HOM05D006551 ORTHO05D008546 3.8e-94 349.0 218 73.4
Dinv15335 Davidia involucrata HOM05D006551 ORTHO05D008546 4.9e-94 348.6 241 68.5
CSS0008489 Camellia sinensis var. sinensis HOM05D006551 ORTHO05D008546 1.4e-93 347.1 228 69.3
TAR629G1611 Trochodendron aralioides HOM05D006551 ORTHO05D008546 2.4e-93 346.3 231 69.3
Sabra06G0003800 Salix brachista HOM05D006551 ORTHO05D008546 4.2e-93 345.5 218 72.5
CSS0047745 Camellia sinensis var. sinensis HOM05D006551 ORTHO05D008546 7.1e-93 344.7 228 68.9
PGSC0003DMG400015008 Solanum tuberosum HOM05D006551 ORTHO05D008546 9.3e-93 344.4 231 68.0
Cfa000032 Carpinus fangiana HOM05D006551 ORTHO05D008546 2.1e-92 343.2 220 70.5
arahy.Tifrunner.gnm1.ann1.TFI8LM Arachis hypogaea HOM05D006551 ORTHO05D008546 3.5e-92 342.4 239 66.9
VMungo0540G0952 Vigna mungo HOM05D006551 ORTHO05D008546 1.0e-91 340.9 240 66.2
arahy.Tifrunner.gnm1.ann1.HFV92P Arachis hypogaea HOM05D006551 ORTHO05D008546 1.8e-91 340.1 239 66.5
Ciclev10016440m.g Citrus clementina HOM05D006551 ORTHO05D008546 2.3e-91 339.7 218 71.6
QL05p067740 Quercus lobata HOM05D006551 ORTHO05D008546 5.1e-91 338.6 226 68.6
Prupe.4G003400 Prunus persica HOM05D006551 ORTHO05D008546 1.3e-89 334.0 224 69.2
Sc17g0008010 Simmondsia chinensis HOM05D006551 ORTHO05D008546 1.3e-89 334.0 219 68.9
Atru.chr1.1073 Acer truncatum HOM05D006551 ORTHO05D008546 1.6e-89 333.6 231 66.2
FvH4_3g00300 Fragaria vesca HOM05D006551 ORTHO05D008546 1.6e-89 333.6 223 69.5
RcHm_v2.0_Chr5g0000451 Rosa chinensis HOM05D006551 ORTHO05D008546 1.6e-89 333.6 244 65.2
CiPaw.10G082200 Carya illinoinensis HOM05D006551 ORTHO05D008546 2.1e-89 333.2 216 70.4
Gorai.011G008500 Gossypium raimondii HOM05D006551 ORTHO05D008546 4.8e-89 332.0 222 69.4
SpUn1059_0010 Schrenkiella parvula HOM05D006551 ORTHO05D008546 8.2e-89 331.3 169 92.9
COL.COLO4_31943 Corchorus olitorius HOM05D000879 ORTHO05D002864 5.3e-88 328.6 218 69.3
Gohir.A10G007900 Gossypium hirsutum HOM05D006551 ORTHO05D008546 5.3e-88 328.6 222 68.5
PSO210G1263 Papaver somniferum HOM05D006551 ORTHO05D008546 5.3e-88 328.6 234 65.8
Gohir.D10G007800 Gossypium hirsutum HOM05D006551 ORTHO05D008546 9.0e-88 327.8 222 68.5
PSO210G0886 Papaver somniferum HOM05D006551 ORTHO05D008546 4.5e-87 325.5 234 64.5
Cc09_g00290 Coffea canephora HOM05D006551 ORTHO05D008546 1.3e-86 323.9 217 69.6
Hma1.2p1_1175F.1_g264070 Hydrangea macrophylla HOM05D006551 ORTHO05D008546 1.7e-86 323.6 218 69.7
MD10G1339500 Malus domestica HOM05D006551 ORTHO05D008546 6.5e-86 321.6 218 67.9
SalBow8G1397 Salvia bowleyana HOM05D006551 ORTHO05D008546 6.5e-86 321.6 248 61.7
SalBow8G2449 Salvia bowleyana HOM05D006551 ORTHO05D008546 6.5e-86 321.6 248 61.7
Migut.M01446 Erythranthe guttata HOM05D006551 ORTHO05D008546 8.4e-86 321.2 229 64.2
Eucgr.L00150 Eucalyptus grandis HOM05D006551 ORTHO05D008546 1.1e-85 320.9 202 73.3
Aqoxy1G04265 Aquilegia oxysepala HOM05D006551 ORTHO05D008546 2.5e-85 319.7 222 66.2
Eucgr.E03850 Eucalyptus grandis HOM05D006551 ORTHO05D008546 2.5e-85 319.7 235 62.6
MELO3C008006.2 Cucumis melo HOM05D006551 ORTHO05D008546 2.1e-84 316.6 224 65.2
Lsat_1_v5_gn_7_12961 Lactuca sativa HOM05D006551 ORTHO05D008546 2.7e-84 316.2 217 65.0
Nitab4.5_0000147g0330 Nicotiana tabacum HOM05D006551 ORTHO05D008546 2.7e-84 316.2 219 65.8
Hund08692 Selenicereus undatus HOM05D006551 ORTHO05D008546 3.5e-84 315.8 258 59.3
HPP92_018202 Vanilla planifolia HOM05D006551 ORTHO05D008546 3.5e-84 315.8 224 68.8
Lj1C1247T0 Lonicera japonica HOM05D006551 ORTHO05D008546 7.9e-84 314.7 230 65.7
MSTRG.7126 Avicennia marina HOM05D006551 ORTHO05D008546 1.3e-83 313.9 230 62.2
CAN.G1263.6 Capsicum annuum HOM05D006551 ORTHO05D008546 5.1e-83 312.0 206 68.9
ECA248G0604 Erigeron canadensis HOM05D006551 ORTHO05D008546 8.7e-83 311.2 216 63.9
Cpa.g.sc27.224 Carica papaya HOM05D006551 ORTHO05D008546 1.1e-82 310.8 221 66.5
Peaxi162Scf00811g00222 Petunia axillaris HOM05D006551 ORTHO05D008546 1.1e-82 310.8 207 68.1
Ah.14g087400 Amaranthus hybridus HOM05D006551 ORTHO05D008546 1.5e-82 310.5 290 53.8
CsaV3_6G048230 Cucumis sativus L. HOM05D006551 ORTHO05D008546 1.5e-82 310.5 226 64.2
ClCG01G021210 Citrullus lanatus HOM05D006551 ORTHO05D008546 1.3e-81 307.4 226 63.7
EL10Ac8g20269 Beta vulgaris HOM05D006551 ORTHO05D008546 3.7e-81 305.8 224 64.7
SGA_v2.0_scaffold7G03692 Striga asiatica HOM05D006551 ORTHO05D008546 4.8e-81 305.4 204 66.7
PGR042G3561 Punica granatum HOM05D006551 ORTHO05D008546 6.3e-81 305.1 218 63.8
Sed0011139 Sechium edule HOM05D006551 ORTHO05D008546 6.3e-81 305.1 242 60.3
HanXRQChr05g0129031 Helianthus annuus HOM05D006551 ORTHO05D008546 4.1e-80 302.4 214 63.6
DCAR_002245 Daucus carota HOM05D006551 ORTHO05D008546 5.3e-80 302.0 217 64.1
Nitab4.5_0006294g0080 Nicotiana tabacum HOM05D006551 ORTHO05D008546 6.9e-80 301.6 219 64.4
Zm00001eb380830 Zea mays HOM05D006551 ORTHO05D008546 1.3e-78 297.4 214 65.0
unitig_37.g12177 Utricularia gibba HOM05D006551 ORTHO05D008546 3.6e-76 289.3 253 56.9
AUR62021809 Chenopodium quinoa HOM05D006551 ORTHO05D008546 6.1e-76 288.5 221 61.1
Oeu025969.1 Olea europaea HOM05D006551 ORTHO05D008546 8.2e-73 278.1 183 68.3
Psat1g172360 Pisum sativum HOM05D006551 ORTHO05D008546 4.1e-72 275.8 171 75.4
Solyc04g015080.4 Solanum lycopersicum HOM05D006551 ORTHO05D008546 5.5e-69 265.4 158 72.8
Hma1.2p1_1175F.1_g264060 Hydrangea macrophylla HOM05D006551 ORTHO05D008546 3.9e-67 259.2 147 76.9
PGR004G0828 Punica granatum HOM05D006551 ORTHO05D008546 8.8e-67 258.1 166 68.7
Nn1g07524 Nelumbo nucifera HOM05D006551 ORTHO05D008546 1.5e-66 257.3 156 73.1
vmacro03605 Vaccinium macrocarpon HOM05D006551 ORTHO05D008546 5.7e-66 255.4 171 70.8
Haze_07021 Corylus avellana HOM05D006551 ORTHO05D008546 2.4e-64 250.0 216 56.5
Eucgr.E03848 Eucalyptus grandis HOM05D006551 ORTHO05D008546 5.9e-63 245.4 164 63.4
ATR0751G145 Amborella trichopoda HOM05D006551 ORTHO05D008546 9.7e-58 228.0 168 64.3
AUR62012856 Chenopodium quinoa HOM05D006551 ORTHO05D008546 3.7e-57 226.1 171 62.6
Rhsim13G0140300 Rhododendron simsii HOM05D006551 ORTHO05D008546 8.2e-57 224.9 147 67.3
AagrBONN_evm.TU.Sc2ySwM_362.1805 Anthoceros agrestis HOM05D006551 ORTHO05D008546 2.2e-54 216.9 291 39.2
AagrBONN_evm.TU.Sc2ySwM_369.541 Anthoceros agrestis HOM05D006551 ORTHO05D008546 3.1e-48 196.4 245 40.0
Sp4g01310 Schrenkiella parvula HOM05D006551 ORTHO05D008546 7.0e-48 195.3 144 69.4
Peaxi162Scf00827g00057 Petunia axillaris HOM05D006551 ORTHO05D008546 1.5e-45 187.6 164 60.4
SEGI_23146 Sequoiadendron giganteum HOM05D006551 ORTHO05D008546 4.2e-45 186.0 224 43.3
Psat2g019160 Pisum sativum HOM05D006551 ORTHO05D008546 6.6e-38 162.2 110 65.5
SHI31451 Sapria himalayana HOM05D006551 ORTHO05D008546 6.6e-38 162.2 115 67.8
CBR_g3891 Chara braunii HOM05D006551 ORTHO05D008546 1.0e-35 154.8 163 46.0
SHI31456 Sapria himalayana HOM05D006551 ORTHO05D008546 1.6e-31 141.0 116 54.3
Sed0010073 Sechium edule HOM05D006551 ORTHO05D008546 3.5e-31 139.8 189 39.2
Glyma.15G120500 Glycine max HOM05D006551 ORTHO05D008546 6.6e-30 135.6 114 62.3
VMungo0540G1474 Vigna mungo HOM05D006551 ORTHO05D008546 4.9e-17 92.8 64 75.0
Hma1.2p1_1322F.1_g275500 Hydrangea macrophylla HOM05D006551 ORTHO05D008546 4.1e-16 89.7 68 67.6
VMungo0540G1416 Vigna mungo HOM05D000555 ORTHO05D001906 7.8e-15 85.5 70 54.3
Cfa024106 Carpinus fangiana HOM05D006551 ORTHO05D008546 1.0e-14 85.1 119 37.0
Pp3c2_11520 Physcomitrium patens HOM05D006551 ORTHO05D008546 3.3e-13 80.1 120 36.7
Os06g0286310 Oryza sativa ssp. japonica HOM05D006551 ORTHO05D008546 1.2e-12 78.2 55 58.2
PRCOL_00002998 Prasinoderma coloniale HOM05D006551 ORTHO05D008546 8.9e-11 72.0 173 32.9
HanXRQChr17g0567191 Helianthus annuus HOM05D000289 ORTHO05D000208 1.5e-10 71.2 52 57.7
Solyc12g056880.2 Solanum lycopersicum HOM05D006551 ORTHO05D008546 2.0e-10 70.9 38 76.3
AL4G11760 Arabidopsis lyrata HOM05D001923 ORTHO05D001903 3.4e-10 70.1 77 55.8
Carub.0004s0142 Capsella rubella HOM05D001923 ORTHO05D001903 7.5e-10 68.9 78 53.8
CARHR113500 Cardamine hirsuta HOM05D001923 ORTHO05D001903 3.7e-09 66.6 72 52.8
PRCOL_00003886 Prasinoderma coloniale HOM05D006551 ORTHO05D044110 6.4e-09 65.9 190 27.4
AT2G22270 Arabidopsis thaliana HOM05D001923 ORTHO05D001903 1.1e-08 65.1 77 51.9
Sp4g01320 Schrenkiella parvula HOM05D001923 ORTHO05D001903 4.1e-08 63.2 77 53.2
BcaC02g08675 Brassica carinata HOM05D001923 ORTHO05D001903 2.7e-07 60.5 81 48.1
Thhalv10000268m.g Eutrema salsugineum HOM05D001923 ORTHO05D001903 2.7e-07 60.5 76 51.3
BraA04t17312Z Brassica rapa HOM05D001923 ORTHO05D001903 6.0e-07 59.3 82 45.1
BcaC02g08718 Brassica carinata HOM05D001923 ORTHO05D001903 7.8e-07 58.9 81 46.9
C04p51370 Brassica napus HOM05D001923 ORTHO05D001903 7.8e-07 58.9 81 46.9
BolC4t26728H Brassica oleracea HOM05D001923 ORTHO05D001903 7.8e-07 58.9 81 46.9
A04p16790 Brassica napus HOM05D001923 ORTHO05D001903 2.3e-06 57.4 81 45.7
Cfa024972 Carpinus fangiana HOM05D006551 ORTHO05D043702 2.3e-06 57.4 126 31.0
Psat1g141560 Pisum sativum HOM05D006551 ORTHO05D008546 2.3e-06 57.4 48 56.2
PGSC0003DMG400021797 Solanum tuberosum HOM05D001923 ORTHO05D001903 8.6e-06 55.5 54 51.9


User provided reference genes

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