Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G48690 Arabidopsis lyrata HOM05D004528 ORTHO05D005815 3.6e-233 811.2 414 100.0
Carub.0003s3385 Capsella rubella HOM05D004528 ORTHO05D005815 2.2e-230 802.0 414 98.6
C07p02330 Brassica napus HOM05D004528 ORTHO05D005815 3.0e-227 791.6 414 97.3
CARHR109990 Cardamine hirsuta HOM05D004528 ORTHO05D005815 3.0e-227 791.6 414 97.3
BcaC06g36598 Brassica carinata HOM05D004528 ORTHO05D005815 5.1e-227 790.8 414 96.9
BraA07t27910Z Brassica rapa HOM05D004528 ORTHO05D005815 5.1e-227 790.8 414 96.9
A07p01220 Brassica napus HOM05D004528 ORTHO05D005815 2.5e-226 788.5 414 96.6
BolC7t40641H Brassica oleracea HOM05D004528 ORTHO05D005815 4.3e-226 787.7 414 97.1
AT2G19560 Arabidopsis thaliana HOM05D004528 ORTHO05D005815 7.3e-226 786.9 414 96.1
Thhalv10022707m.g Eutrema salsugineum HOM05D004528 ORTHO05D005815 4.0e-224 781.2 414 96.1
BcaB08g34873 Brassica carinata HOM05D004528 ORTHO05D005815 2.0e-223 778.9 414 95.9
C05p19590 Brassica napus HOM05D004528 ORTHO05D005815 5.8e-223 777.3 426 93.9
BolC5t30662H Brassica oleracea HOM05D004528 ORTHO05D005815 5.8e-223 777.3 426 93.9
BcaC05g26001 Brassica carinata HOM05D004528 ORTHO05D005815 2.9e-222 775.0 426 93.7
Sp3g32930 Schrenkiella parvula HOM05D004528 ORTHO05D005815 4.7e-217 757.7 414 94.0
Aa31LG8G16570 Aethionema arabicum HOM05D004528 ORTHO05D005815 1.2e-212 743.0 414 90.1
THA.LOC104820025 Tarenaya hassleriana HOM05D004528 ORTHO05D005815 1.2e-212 743.0 414 90.8
BcaB04g16932 Brassica carinata HOM05D004528 ORTHO05D005815 3.1e-208 728.4 416 90.6
Gorai.010G082500 Gossypium raimondii HOM05D004528 ORTHO05D005815 1.1e-200 703.4 414 85.3
COL.COLO4_18209 Corchorus olitorius HOM05D004528 ORTHO05D005815 4.9e-198 694.5 414 83.8
Thecc.09G090300 Theobroma cacao HOM05D004528 ORTHO05D005815 8.4e-198 693.7 414 84.5
Duzib150G1454 Durio zibethinus HOM05D004528 ORTHO05D005815 9.3e-197 690.3 409 84.4
Manes.16G102700 Manihot esculenta HOM05D004528 ORTHO05D005815 4.6e-196 688.0 414 83.1
RcHm_v2.0_Chr2g0093221 Rosa chinensis HOM05D004528 ORTHO05D005815 3.9e-195 684.9 414 82.1
Potri.006G221700 Populus trichocarpa HOM05D004528 ORTHO05D005815 8.1e-193 677.2 414 81.9
Ciclev10008462m.g Citrus clementina HOM05D004528 ORTHO05D005815 1.4e-192 676.4 414 82.6
QL02p062827 Quercus lobata HOM05D004528 ORTHO05D005815 2.4e-192 675.6 410 82.7
CANSAT56G0596 Cannabis sativa HOM05D004528 ORTHO05D005815 3.1e-192 675.2 414 82.4
CANSAT56G1313 Cannabis sativa HOM05D004528 ORTHO05D005815 3.1e-192 675.2 414 82.4
CiPaw.03G217000 Carya illinoinensis HOM05D004528 ORTHO05D005815 3.1e-192 675.2 416 82.5
FAN19G1322 Fragaria x ananassa HOM05D004528 ORTHO05D005815 9.0e-192 673.7 414 80.9
FAN23G0078 Fragaria x ananassa HOM05D004528 ORTHO05D005815 9.0e-192 673.7 414 80.7
FvH4_1g07290 Fragaria vesca HOM05D004528 ORTHO05D005815 1.2e-191 673.3 414 80.7
GSVIVG01015212001 Vitis vinifera HOM05D004528 ORTHO05D005815 1.5e-191 672.9 414 81.6
FAN28G2769 Fragaria x ananassa HOM05D004528 ORTHO05D005815 2.0e-191 672.5 414 80.7
Prupe.7G211100 Prunus persica HOM05D004528 ORTHO05D005815 2.0e-191 672.5 414 80.7
CSS0033534 Camellia sinensis var. sinensis HOM05D004528 ORTHO05D005815 3.4e-191 671.8 414 81.4
ECA240G0155 Erigeron canadensis HOM05D004528 ORTHO05D005815 4.5e-191 671.4 413 82.1
BcaB04g16933 Brassica carinata HOM05D004528 ORTHO05D005815 1.0e-190 670.2 418 84.2
TWI34G0432 Tripterygium wilfordii HOM05D004528 ORTHO05D005815 1.0e-190 670.2 414 80.4
MD15G1206300 Malus domestica HOM05D004528 ORTHO05D005815 1.3e-190 669.8 414 80.7
Haze_25904 Corylus avellana HOM05D004528 ORTHO05D005815 3.8e-190 668.3 411 82.0
MD02G1077700 Malus domestica HOM05D004528 ORTHO05D005815 3.8e-190 668.3 414 80.4
Glyma.17G055500 Glycine max HOM05D004528 ORTHO05D005815 1.6e-188 662.9 414 80.9
Migut.J00603 Erythranthe guttata HOM05D004528 ORTHO05D005815 2.1e-188 662.5 413 80.9
VMungo1215G0680 Vigna mungo HOM05D004528 ORTHO05D005815 3.5e-188 661.8 414 80.9
SalBow6G2464 Salvia bowleyana HOM05D004528 ORTHO05D005815 4.6e-188 661.4 413 79.7
Dinv36760 Davidia involucrata HOM05D004528 ORTHO05D005815 6.0e-188 661.0 414 80.7
MSTRG.17774 Avicennia marina HOM05D004528 ORTHO05D005815 7.9e-188 660.6 413 80.4
vmacro17227 Vaccinium macrocarpon HOM05D004528 ORTHO05D005815 7.9e-188 660.6 445 76.2
Lalb_Chr13g0299741 Lupinus albus HOM05D004528 ORTHO05D005815 5.1e-187 657.9 414 80.9
Phvul.003G137300 Phaseolus vulgaris HOM05D004528 ORTHO05D005815 6.7e-187 657.5 414 80.2
SGA_v2.0_scaffold62G21604 Striga asiatica HOM05D004528 ORTHO05D005815 6.7e-187 657.5 413 79.9
Cc06_g11330 Coffea canephora HOM05D004528 ORTHO05D005815 1.1e-186 656.8 411 80.3
Hma1.2p1_0800F.1_g220090 Hydrangea macrophylla HOM05D004528 ORTHO05D005815 1.1e-186 656.8 411 80.0
Glyma.13G103500 Glycine max HOM05D004528 ORTHO05D005815 1.9e-186 656.0 411 80.5
Lj7A674G30 Lonicera japonica HOM05D004528 ORTHO05D005815 1.9e-186 656.0 409 81.4
CsaV3_2G001490 Cucumis sativus L. HOM05D004528 ORTHO05D005815 3.3e-186 655.2 409 79.5
Sed0012435 Sechium edule HOM05D004528 ORTHO05D005815 1.3e-185 653.3 414 79.0
MBI01_g09956_MAGBIO Magnolia biondii HOM05D004528 ORTHO05D005815 2.1e-185 652.5 411 80.0
ClCG11G001780 Citrullus lanatus HOM05D004528 ORTHO05D005815 3.7e-185 651.7 414 79.0
DCAR_011978 Daucus carota HOM05D004528 ORTHO05D005815 1.1e-184 650.2 415 79.5
Eucgr.C00900 Eucalyptus grandis HOM05D004528 ORTHO05D005815 3.1e-184 648.7 413 78.9
arahy.Tifrunner.gnm1.ann1.A138U3 Arachis hypogaea HOM05D004528 ORTHO05D005815 6.9e-184 647.5 414 78.5
arahy.Tifrunner.gnm1.ann1.PT0GJ5 Arachis hypogaea HOM05D004528 ORTHO05D005815 5.8e-183 644.4 414 78.3
Lsat_1_v5_gn_7_37341 Lactuca sativa HOM05D004528 ORTHO05D005815 5.8e-183 644.4 413 79.2
PGR142G0229 Punica granatum HOM05D004528 ORTHO05D005815 1.0e-182 643.7 413 78.9
TPR.G3725 Trifolium pratense HOM05D004528 ORTHO05D005815 2.9e-182 642.1 414 78.7
Psat3g072560 Pisum sativum HOM05D004528 ORTHO05D005815 1.1e-181 640.2 414 78.3
PGSC0003DMG400013151 Solanum tuberosum HOM05D004528 ORTHO05D005815 4.2e-181 638.3 413 77.7
Oeu018425.1 Olea europaea HOM05D004528 ORTHO05D005815 5.5e-181 637.9 413 79.2
Solyc07g039210.4 Solanum lycopersicum HOM05D004528 ORTHO05D005815 7.2e-181 637.5 413 77.0
TAR626G1836 Trochodendron aralioides HOM05D004528 ORTHO05D005815 9.3e-181 637.1 414 77.8
Aqoxy7G01232 Aquilegia oxysepala HOM05D004528 ORTHO05D005815 1.2e-180 636.7 414 77.5
CAN.G1208.1 Capsicum annuum HOM05D004528 ORTHO05D005815 2.1e-180 636.0 410 77.6
Sopen07g017560 Solanum pennellii HOM05D004528 ORTHO05D005815 3.5e-180 635.2 413 76.8
Nitab4.5_0011030g0010 Nicotiana tabacum HOM05D004528 ORTHO05D005815 1.8e-179 632.9 414 77.1
Lj4g0008156 Lotus japonicus HOM05D004528 ORTHO05D005815 2.3e-179 632.5 416 77.4
Nitab4.5_0005634g0070 Nicotiana tabacum HOM05D004528 ORTHO05D005815 2.2e-177 625.9 420 76.2
Peaxi162Scf00709g00003 Petunia axillaris HOM05D004528 ORTHO05D005815 3.7e-177 625.2 420 75.7
Gohir.A06G072200 Gossypium hirsutum HOM05D004528 ORTHO05D005815 1.1e-176 623.6 375 83.5
Gohir.D06G070800 Gossypium hirsutum HOM05D004528 ORTHO05D005815 1.1e-176 623.6 371 84.4
AUR62033986 Chenopodium quinoa HOM05D004528 ORTHO05D005815 1.4e-176 623.2 412 76.5
Medtr7g091650 Medicago truncatula HOM05D004528 ORTHO05D005815 1.8e-176 622.9 415 77.8
unitig_748.g7306 Utricularia gibba HOM05D004528 ORTHO05D005815 2.4e-176 622.5 430 74.2
Actinidia25256 Actinidia chinensis HOM05D004528 ORTHO05D005815 9.0e-176 620.5 410 77.3
EL10Ac8g19227 Beta vulgaris HOM05D004528 ORTHO05D005815 3.4e-175 618.6 439 72.9
PSO832G3660 Papaver somniferum HOM05D004528 ORTHO05D005815 1.4e-171 606.7 415 74.0
PSO063G0639 Papaver somniferum HOM05D004528 ORTHO05D005815 1.8e-171 606.3 415 74.2
SEGI_06455 Sequoiadendron giganteum HOM05D004528 ORTHO05D005815 1.5e-167 593.2 413 68.8
Nn6g35452 Nelumbo nucifera HOM05D004528 ORTHO05D005815 2.6e-167 592.4 414 73.7
HPP92_010493 Vanilla planifolia HOM05D004528 ORTHO05D005815 3.8e-166 588.6 415 72.5
SHI24590 Sapria himalayana HOM05D004528 ORTHO05D005815 1.0e-163 580.5 410 73.7
A07p01200 Brassica napus HOM05D004528 ORTHO05D005815 1.4e-163 580.1 305 96.1
Ca_08460_v3 Cicer arietinum L. HOM05D004528 ORTHO05D005815 2.0e-162 576.2 406 73.6
MELO3C004622.2 Cucumis melo HOM05D004528 ORTHO05D005815 5.3e-160 568.2 414 71.0
Cpa.g.sc283.9 Carica papaya HOM05D004528 ORTHO05D005815 2.5e-157 559.3 411 72.0
Sc18g0002070 Simmondsia chinensis HOM05D004528 ORTHO05D005815 1.2e-156 557.0 371 76.8
Os09g0386400 Oryza sativa ssp. japonica HOM05D004528 ORTHO05D005815 3.3e-154 548.9 410 66.6
Mapoly0005s0151 Marchantia polymorpha HOM05D004528 ORTHO05D005815 5.3e-152 541.6 410 65.9
Rhsim05G0022000 Rhododendron simsii HOM05D004528 ORTHO05D005815 3.2e-149 532.3 323 82.4
Sabra06G0171200 Salix brachista HOM05D004528 ORTHO05D005815 4.0e-147 525.4 485 61.0
AUR62027494 Chenopodium quinoa HOM05D004528 ORTHO05D005815 2.2e-145 519.6 412 67.2
Pp3c17_12810 Physcomitrium patens HOM05D004528 ORTHO05D005815 8.0e-140 501.1 398 63.3
BcaB03g16691 Brassica carinata HOM05D004528 ORTHO05D005815 4.0e-139 498.8 313 83.7
SMO117G0048 Selaginella moellendorffii HOM05D004528 ORTHO05D005815 7.5e-138 494.6 405 58.5
AagrBONN_evm.TU.Sc2ySwM_344.906 Anthoceros agrestis HOM05D004528 ORTHO05D005815 1.7e-137 493.4 412 59.7
FAN26G2732 Fragaria x ananassa HOM05D004528 ORTHO05D005815 2.3e-134 483.0 282 85.1
FAN26G1375 Fragaria x ananassa HOM05D004528 ORTHO05D005815 1.1e-133 480.7 282 84.8
Atru.chr7.1579 Acer truncatum HOM05D004528 ORTHO05D005815 9.5e-133 477.6 296 80.4
BcaB03g16690 Brassica carinata HOM05D004528 ORTHO05D005815 1.2e-122 444.1 284 82.0
Hma1.2p1_0800F.1_g220100 Hydrangea macrophylla HOM05D004528 ORTHO05D005815 4.9e-121 438.7 256 85.2
BcaB03g16744 Brassica carinata HOM05D004528 ORTHO05D005815 3.4e-114 416.0 292 78.1
Zm00001eb311810 Zea mays HOM05D004528 ORTHO05D005815 1.6e-111 407.1 256 77.0
CDE02G2136 Ceratophyllum demersum HOM05D004528 ORTHO05D005815 1.6e-108 397.1 314 65.9
HPP92_010492 Vanilla planifolia HOM05D004528 ORTHO05D005815 4.0e-107 392.5 285 70.9
CBR_g78884 Chara braunii HOM05D004528 ORTHO05D005815 1.3e-97 360.9 415 47.0
CARHR052830 Cardamine hirsuta HOM05D004528 ORTHO05D005815 2.4e-91 340.1 238 73.9
Ca_30052_v3 Cicer arietinum L. HOM05D004528 ORTHO05D005815 4.5e-82 309.3 191 80.6
CARHR051760 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.1e-80 304.7 199 77.4
Oeu018237.1 Olea europaea HOM05D004528 ORTHO05D005815 7.9e-79 298.5 205 75.1
HanXRQChr09g0238111 Helianthus annuus HOM05D004528 ORTHO05D005815 1.8e-75 287.3 184 77.2
CARHR054270 Cardamine hirsuta HOM05D004528 ORTHO05D005815 2.7e-71 273.5 204 71.1
PGSC0003DMG400022053 Solanum tuberosum HOM05D004528 ORTHO05D005815 6.3e-68 262.3 173 75.7
CARHR052790 Cardamine hirsuta HOM05D004528 ORTHO05D005815 3.3e-61 240.0 199 70.4
MCO16G315 Micromonas commoda HOM05D004528 ORTHO05D005815 7.4e-61 238.8 402 35.3
CARHR122310 Cardamine hirsuta HOM05D004528 ORTHO05D005815 4.8e-60 236.1 126 91.3
CARHR051750 Cardamine hirsuta HOM05D004528 ORTHO05D005815 2.2e-57 227.3 161 78.3
Cre02.g110400 Chlamydomonas reinhardtii HOM05D004528 ORTHO05D005815 1.9e-56 224.2 403 33.3
MD15G1352000 Malus domestica HOM05D004528 ORTHO05D005815 2.5e-56 223.8 220 54.5
CARHR122320 Cardamine hirsuta HOM05D004528 ORTHO05D005815 3.6e-55 219.9 177 71.8
ATR0026G021 Amborella trichopoda HOM05D004528 ORTHO05D005815 1.4e-54 218.0 131 81.7
PRCOL_00001383 Prasinoderma coloniale HOM05D004528 ORTHO05D005815 6.7e-54 215.7 321 35.8
Sp2g03965 Schrenkiella parvula HOM05D004528 ORTHO05D005815 6.5e-49 199.1 114 88.6
arahy.Tifrunner.gnm1.ann1.43843R Arachis hypogaea HOM05D004528 ORTHO05D005815 6.1e-47 192.6 121 76.9
arahy.Tifrunner.gnm1.ann1.VVLB7Q Arachis hypogaea HOM05D004528 ORTHO05D005815 2.9e-41 173.7 102 82.4
Ah.14g085220 Amaranthus hybridus HOM05D004528 ORTHO05D005815 5.3e-35 152.9 414 30.2
arahy.Tifrunner.gnm1.ann1.DFU5EN Arachis hypogaea HOM05D004528 ORTHO05D005815 1.0e-33 148.7 83 84.3
ATR0026G010 Amborella trichopoda HOM05D004528 ORTHO05D005815 3.6e-31 140.2 80 83.8
ATR0026G011 Amborella trichopoda HOM05D004528 ORTHO05D005815 1.1e-27 128.6 107 58.9
RcHm_v2.0_Chr7g0206721 Rosa chinensis HOM05D004528 ORTHO05D005815 3.5e-26 123.6 115 59.1
BcaC03g15601 Brassica carinata HOM05D004528 ORTHO05D032255 1.0e-22 112.1 127 57.5
BolC2t09319H Brassica oleracea HOM05D004528 ORTHO05D032255 4.0e-22 110.2 143 50.3
C02p33900 Brassica napus HOM05D004528 ORTHO05D032255 1.7e-20 104.8 146 49.3
CARHR054280 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.4e-19 101.7 72 77.8
RcHm_v2.0_Chr7g0207111 Rosa chinensis HOM05D004528 ORTHO05D005815 7.0e-19 99.4 99 56.6
Sopen12g027230 Solanum pennellii HOM05D004528 ORTHO05D051045 8.6e-17 92.4 153 38.6
FAN23G1719 Fragaria x ananassa HOM05D004528 ORTHO05D005815 1.1e-16 92.0 51 84.3
CARHR054260 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.4e-14 85.1 75 61.3
RcHm_v2.0_Chr7g0207281 Rosa chinensis HOM05D004528 ORTHO05D005815 4.9e-12 76.6 59 72.9
arahy.Tifrunner.gnm1.ann1.1S90RN Arachis hypogaea HOM05D004528 ORTHO05D005815 2.3e-09 67.8 57 61.4
RcHm_v2.0_Chr7g0230831 Rosa chinensis HOM05D004528 ORTHO05D005815 1.5e-08 65.1 40 77.5
arahy.Tifrunner.gnm1.ann1.UXE40S Arachis hypogaea HOM05D004528 ORTHO05D005815 1.6e-07 61.6 81 44.4
Solyc12g070150.1 Solanum lycopersicum HOM05D004528 ORTHO05D005815 8.9e-06 55.8 41 63.4


User provided reference genes

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