Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G35650 Arabidopsis lyrata HOM05D005316 ORTHO05D006495 0.0e+00 1398.3 955 100.0
AT3G21540 Arabidopsis thaliana HOM05D005316 ORTHO05D006495 0.0e+00 1302.3 957 94.5
Carub.0003s2158 Capsella rubella HOM05D005316 ORTHO05D006495 0.0e+00 1240.7 957 91.2
CARHR097490 Cardamine hirsuta HOM05D005316 ORTHO05D006495 0.0e+00 1201.8 958 89.6
Aa31LG9G1930 Aethionema arabicum HOM05D005316 ORTHO05D006495 0.0e+00 1161.4 952 86.0
Thhalv10024329m.g Eutrema salsugineum HOM05D005316 ORTHO05D006495 0.0e+00 1104.7 954 82.7
Sp7g13750 Schrenkiella parvula HOM05D005316 ORTHO05D006495 0.0e+00 1077.0 954 81.8
A01p22070 Brassica napus HOM05D005316 ORTHO05D006495 1.1e-301 1040.0 954 80.9
C01p27470 Brassica napus HOM05D005316 ORTHO05D006495 1.2e-300 1036.6 954 80.8
BraA01t02113Z Brassica rapa HOM05D005316 ORTHO05D006495 1.3e-299 1033.1 954 80.6
THA.LOC104802568 Tarenaya hassleriana HOM05D005316 ORTHO05D006495 1.3e-299 1033.1 932 80.8
BolC1t02686H Brassica oleracea HOM05D005316 ORTHO05D006495 2.3e-299 1032.3 954 80.6
BcaC09g50240 Brassica carinata HOM05D005316 ORTHO05D006495 4.8e-297 1024.6 956 80.4
THA.LOC104820227 Tarenaya hassleriana HOM05D005316 ORTHO05D006495 4.1e-296 1021.5 930 80.2
Duzib128G2040 Durio zibethinus HOM05D005316 ORTHO05D006495 4.7e-268 928.3 934 74.2
Rhsim03G0088900 Rhododendron simsii HOM05D005316 ORTHO05D006495 1.0e-267 927.2 949 72.8
Gohir.A04G069900 Gossypium hirsutum HOM05D005316 ORTHO05D006495 1.8e-267 926.4 937 74.5
Cpa.g.sc5.157 Carica papaya HOM05D005316 ORTHO05D006495 4.0e-267 925.2 934 74.9
Potri.006G121100 Populus trichocarpa HOM05D005316 ORTHO05D006495 9.8e-266 920.6 941 73.4
Thecc.05G072100 Theobroma cacao HOM05D005316 ORTHO05D006495 4.8e-265 918.3 935 74.7
Gohir.D04G108500 Gossypium hirsutum HOM05D005316 ORTHO05D006495 2.7e-263 912.5 933 73.8
Gorai.009G412600 Gossypium raimondii HOM05D005316 ORTHO05D006495 2.9e-262 909.1 933 73.7
Atru.chr8.1745 Acer truncatum HOM05D005316 ORTHO05D006495 3.7e-257 892.1 939 72.8
Ciclev10010984m.g Citrus clementina HOM05D005316 ORTHO05D006495 5.4e-256 888.3 937 72.8
vmacro07322 Vaccinium macrocarpon HOM05D005316 ORTHO05D006495 5.9e-255 884.8 973 59.2
Actinidia26652 Actinidia chinensis HOM05D005316 ORTHO05D006495 5.0e-254 881.7 936 71.7
VMungo1383G0853 Vigna mungo HOM05D005316 ORTHO05D006495 1.1e-253 880.6 943 71.4
TWI77G0675 Tripterygium wilfordii HOM05D005316 ORTHO05D006495 3.3e-253 879.0 938 71.6
Prupe.7G125100 Prunus persica HOM05D005316 ORTHO05D006495 7.3e-253 877.9 936 71.7
Sabra06G0095300 Salix brachista HOM05D005316 ORTHO05D006495 9.5e-253 877.5 939 71.8
MD12G1106200 Malus domestica HOM05D005316 ORTHO05D006495 6.8e-251 871.3 936 71.4
Eucgr.K02435 Eucalyptus grandis HOM05D005316 ORTHO05D006495 2.6e-250 869.4 936 72.6
CiPaw.09G002900 Carya illinoinensis HOM05D005316 ORTHO05D006495 5.7e-250 868.2 936 70.9
CANSAT80G2075 Cannabis sativa HOM05D005316 ORTHO05D006495 9.8e-250 867.5 940 71.5
Manes.09G050526 Manihot esculenta HOM05D005316 ORTHO05D006495 1.3e-249 867.1 938 70.4
Peaxi162Scf00435g01012 Petunia axillaris HOM05D005316 ORTHO05D006495 3.7e-249 865.5 932 71.4
AUR62043277 Chenopodium quinoa HOM05D005316 ORTHO05D006495 3.5e-247 859.0 969 67.3
PGR142G2834 Punica granatum HOM05D005316 ORTHO05D006495 1.3e-246 857.1 936 60.5
ClCG04G009490 Citrullus lanatus HOM05D005316 ORTHO05D006495 2.3e-246 856.3 927 70.8
MELO3C024484.2 Cucumis melo HOM05D005316 ORTHO05D006495 2.3e-246 856.3 934 70.2
Nitab4.5_0003314g0010 Nicotiana tabacum HOM05D005316 ORTHO05D006495 2.3e-246 856.3 954 70.9
CsaV3_6G040110 Cucumis sativus L. HOM05D005316 ORTHO05D006495 3.0e-246 855.9 934 70.3
TAR369G0309 Trochodendron aralioides HOM05D005316 ORTHO05D006495 3.0e-246 855.9 936 69.9
Glyma.19G186600 Glycine max HOM05D005316 ORTHO05D006495 2.5e-245 852.8 943 70.6
COL.COLO4_26906 Corchorus olitorius HOM05D005316 ORTHO05D006495 4.3e-245 852.0 949 70.3
CSS0008696 Camellia sinensis var. sinensis HOM05D005316 ORTHO05D006495 9.5e-245 850.9 934 59.6
TPR.G12554 Trifolium pratense HOM05D005316 ORTHO05D006495 2.6e-242 842.8 943 69.6
Glyma.03G186500 Glycine max HOM05D005316 ORTHO05D006495 5.8e-242 841.6 943 70.2
Phvul.001G181500 Phaseolus vulgaris HOM05D005316 ORTHO05D006495 2.2e-241 839.7 943 70.1
Lalb_Chr01g0018571 Lupinus albus HOM05D005316 ORTHO05D006495 6.4e-241 838.2 942 69.6
BcaC06g32938 Brassica carinata HOM05D005316 ORTHO05D006495 8.3e-241 837.8 953 65.8
Lsat_1_v5_gn_6_28620 Lactuca sativa HOM05D005316 ORTHO05D006495 1.4e-240 837.0 938 70.4
RcHm_v2.0_Chr3g0470921 Rosa chinensis HOM05D005316 ORTHO05D006495 1.4e-240 837.0 936 68.9
Aqoxy1G00948 Aquilegia oxysepala HOM05D005316 ORTHO05D006495 1.2e-239 833.9 935 67.2
QL07p042170 Quercus lobata HOM05D005316 ORTHO05D006495 3.5e-239 832.4 1107 62.1
PSO063G2956 Papaver somniferum HOM05D005316 ORTHO05D006495 1.0e-238 830.9 949 62.5
EL10Ac7g16684 Beta vulgaris HOM05D005316 ORTHO05D006495 2.3e-238 829.7 942 68.8
Medtr4g123597 Medicago truncatula HOM05D005316 ORTHO05D006495 2.3e-238 829.7 942 69.0
DCAR_020803 Daucus carota HOM05D005316 ORTHO05D006495 5.0e-238 828.6 938 69.3
Ca_08924_v3 Cicer arietinum L. HOM05D005316 ORTHO05D006495 1.1e-237 827.4 943 68.6
Sed0019607 Sechium edule HOM05D005316 ORTHO05D006495 5.6e-237 825.1 934 69.3
PSO339G4035 Papaver somniferum HOM05D005316 ORTHO05D006495 7.3e-237 824.7 940 64.0
Nn6g35213 Nelumbo nucifera HOM05D005316 ORTHO05D006495 9.5e-237 824.3 932 67.5
arahy.Tifrunner.gnm1.ann1.731ZEV Arachis hypogaea HOM05D005316 ORTHO05D006495 3.6e-236 822.4 945 69.2
PGSC0003DMG400025700 Solanum tuberosum HOM05D005316 ORTHO05D006495 4.0e-235 818.9 937 69.5
Nitab4.5_0002535g0010 Nicotiana tabacum HOM05D005316 ORTHO05D006495 3.4e-234 815.8 952 70.0
Cc06_g04580 Coffea canephora HOM05D005316 ORTHO05D006495 4.4e-234 815.5 938 69.2
HanXRQChr13g0400681 Helianthus annuus HOM05D005316 ORTHO05D006495 7.5e-234 814.7 939 68.4
arahy.Tifrunner.gnm1.ann1.RNM8HY Arachis hypogaea HOM05D005316 ORTHO05D006495 2.9e-233 812.8 984 66.6
AUR62026938 Chenopodium quinoa HOM05D005316 ORTHO05D006495 3.7e-233 812.4 968 65.9
Psat4g020280 Pisum sativum HOM05D005316 ORTHO05D006495 8.3e-233 811.2 949 67.9
FAN14G0140 Fragaria x ananassa HOM05D005316 ORTHO05D006495 1.9e-232 810.1 935 68.3
FvH4_6g16900 Fragaria vesca HOM05D005316 ORTHO05D006495 7.1e-232 808.1 935 68.3
SGA_v2.0_scaffold40G15467 Striga asiatica HOM05D005316 ORTHO05D006495 1.6e-231 807.0 962 56.0
Solyc10g039190.2 Solanum lycopersicum HOM05D005316 ORTHO05D006495 2.1e-231 806.6 935 69.3
FAN05G5169 Fragaria x ananassa HOM05D005316 ORTHO05D006495 2.7e-231 806.2 935 68.3
GSVIVG01033690001 Vitis vinifera HOM05D005316 ORTHO05D006495 6.0e-231 805.1 936 68.7
Ah.15g091450 Amaranthus hybridus HOM05D005316 ORTHO05D006495 1.0e-230 804.3 968 66.9
ECA233G4339 Erigeron canadensis HOM05D005316 ORTHO05D006495 1.3e-230 803.9 948 67.7
FAN05G1083 Fragaria x ananassa HOM05D005316 ORTHO05D006495 5.1e-230 802.0 935 68.1
FAN09G0678 Fragaria x ananassa HOM05D005316 ORTHO05D006495 3.3e-229 799.3 935 68.1
MSTRG.5779 Avicennia marina HOM05D005316 ORTHO05D006495 4.3e-229 798.9 924 69.2
Haze_19439 Corylus avellana HOM05D005316 ORTHO05D006495 9.5e-229 797.7 953 59.2
MBI19_g03558_MAGBIO Magnolia biondii HOM05D005316 ORTHO05D006495 9.5e-229 797.7 964 47.9
SalBow3G2891 Salvia bowleyana HOM05D005316 ORTHO05D006495 9.5e-229 797.7 926 68.4
Sopen10g012250 Solanum pennellii HOM05D005316 ORTHO05D006495 1.2e-228 797.3 935 68.9
Oeu056529.1 Olea europaea HOM05D005316 ORTHO05D006495 1.1e-224 784.3 950 67.1
Dinv37343 Davidia involucrata HOM05D005316 ORTHO05D006495 2.7e-223 779.6 740 71.4
PGSC0003DMG400013161 Solanum tuberosum HOM05D005316 ORTHO05D006495 7.6e-218 761.5 951 67.0
CAN.G1038.14 Capsicum annuum HOM05D005316 ORTHO05D006495 1.3e-217 760.8 947 66.6
Lj1g0025750 Lotus japonicus HOM05D005316 ORTHO05D006495 3.8e-217 759.2 944 66.4
HPP92_025964 Vanilla planifolia HOM05D005316 ORTHO05D006495 7.3e-213 745.0 936 64.6
unitig_578.g15787 Utricularia gibba HOM05D005316 ORTHO05D006495 1.5e-210 737.3 927 65.0
Sc20g0005710 Simmondsia chinensis HOM05D005316 ORTHO05D006495 3.8e-209 732.6 885 66.6
ATR0661G280 Amborella trichopoda HOM05D005316 ORTHO05D006495 2.7e-207 726.5 926 63.0
Migut.J00458 Erythranthe guttata HOM05D005316 ORTHO05D006495 1.0e-206 724.5 954 64.4
CDE07G2059 Ceratophyllum demersum HOM05D005316 ORTHO05D006495 1.6e-204 717.2 940 64.6
Nitab4.5_0000108g0390 Nicotiana tabacum HOM05D005316 ORTHO05D006495 7.6e-202 708.4 941 65.1
Lj3C1008T11 Lonicera japonica HOM05D005316 ORTHO05D006495 1.8e-198 697.2 820 70.0
SHI18788 Sapria himalayana HOM05D005316 ORTHO05D006495 7.1e-192 675.2 851 67.5
CAN.G363.3 Capsicum annuum HOM05D005316 ORTHO05D006495 6.3e-188 662.1 1007 56.3
Os03g0151700 Oryza sativa ssp. japonica HOM05D005316 ORTHO05D006495 2.2e-185 653.7 948 60.5
RcHm_v2.0_Chr7g0224541 Rosa chinensis HOM05D005316 ORTHO05D006495 2.9e-177 626.7 923 57.4
SMO144G0213 Selaginella moellendorffii HOM05D005316 ORTHO05D006495 2.0e-173 614.0 924 59.8
Zm00001eb004160 Zea mays HOM05D005316 ORTHO05D006495 1.0e-169 601.7 749 60.9
Mapoly0021s0013 Marchantia polymorpha HOM05D005316 ORTHO05D006495 1.0e-166 591.7 930 57.7
SEGI_01067 Sequoiadendron giganteum HOM05D005316 ORTHO05D006495 2.0e-165 587.4 854 60.3
AagrBONN_evm.TU.Sc2ySwM_344.3757 Anthoceros agrestis HOM05D005316 ORTHO05D006495 4.5e-162 576.2 945 57.5
CBR_g3060 Chara braunii HOM05D005316 ORTHO05D006495 5.0e-153 546.2 966 55.9
Pp3c24_9020 Physcomitrium patens HOM05D005316 ORTHO05D006495 6.5e-153 545.8 935 52.0
Pp3c24_9070 Physcomitrium patens HOM05D005316 ORTHO05D006495 6.5e-153 545.8 935 52.0
CDE06G1287 Ceratophyllum demersum HOM05D005316 ORTHO05D006495 3.5e-114 417.2 648 42.0
Cre10.g438700 Chlamydomonas reinhardtii HOM05D005316 ORTHO05D006495 3.5e-106 390.6 954 46.1
MCO12G069 Micromonas commoda HOM05D005316 ORTHO05D006495 3.9e-105 387.1 953 42.0
FAN02G2889 Fragaria x ananassa HOM05D005316 ORTHO05D006495 8.1e-103 379.4 576 58.3
RcHm_v2.0_Chr2g0174151 Rosa chinensis HOM05D005316 ORTHO05D006495 1.1e-102 379.0 588 40.3
Lalb_Chr20g0112451 Lupinus albus HOM05D005316 ORTHO05D006495 1.2e-98 365.5 350 57.4
PRCOL_00001463 Prasinoderma coloniale HOM05D005316 ORTHO05D006495 5.1e-73 280.4 729 42.5
Psat3g110240 Pisum sativum HOM05D005316 ORTHO05D017863 1.9e-51 208.8 479 32.6
Psat7g226920 Pisum sativum HOM05D003193 ORTHO05D006495 1.3e-44 186.0 125 72.0
Gohir.A13G089800 Gossypium hirsutum HOM05D005316 ORTHO05D006495 5.5e-43 180.6 184 53.3
Psat0s3791g0160 Pisum sativum HOM05D005316 ORTHO05D006495 1.4e-41 176.0 121 69.4
Psat3g057760 Pisum sativum HOM05D005316 ORTHO05D006495 3.6e-34 151.4 123 56.9
Lalb_Chr20g0112411 Lupinus albus HOM05D005316 ORTHO05D006495 1.3e-31 142.9 115 59.1
PGSC0003DMG400023254 Solanum tuberosum HOM05D005316 ORTHO05D006495 1.3e-31 142.9 193 44.0
Psat2g167720 Pisum sativum HOM05D005316 ORTHO05D006495 9.1e-30 136.7 135 54.8
SEGI_29002 Sequoiadendron giganteum HOM05D005316 ORTHO05D006495 5.9e-29 134.0 110 56.4
Lj3C1008T12 Lonicera japonica HOM05D005316 ORTHO05D006495 1.2e-24 119.8 84 72.6
Psat5g092920 Pisum sativum HOM05D000083 ORTHO05D001244 1.7e-23 115.9 107 57.0
SHI18789 Sapria himalayana HOM05D005316 ORTHO05D006495 1.8e-22 112.5 79 73.4
Sc24g0000540 Simmondsia chinensis HOM05D005316 ORTHO05D006495 3.6e-18 98.2 88 52.3
SEGI_04707 Sequoiadendron giganteum HOM05D005316 ORTHO05D006495 9.8e-16 90.1 73 56.2
PGSC0003DMG400013159 Solanum tuberosum HOM05D005316 ORTHO05D006495 3.2e-14 85.1 84 58.3
Psat0s3199g0080 Pisum sativum HOM05D000071 ORTHO05D022797 5.4e-14 84.3 68 63.2
SEGI_05684 Sequoiadendron giganteum HOM05D005316 ORTHO05D006495 9.2e-14 83.6 82 52.4
Lalb_Chr20g0112421 Lupinus albus HOM05D005316 ORTHO05D006495 5.0e-12 77.8 78 57.7
RcHm_v2.0_Chr7g0191911 Rosa chinensis HOM05D005316 ORTHO05D006495 4.7e-10 71.2 50 68.0
PGSC0003DMG400036928 Solanum tuberosum HOM05D005316 ORTHO05D006495 2.2e-07 62.4 95 48.4
BcaB01g03760 Brassica carinata HOM05D000526 ORTHO05D000956 3.7e-07 61.6 155 25.2
CARHR237730 Cardamine hirsuta HOM05D005151 ORTHO05D006322 4.9e-07 61.2 217 26.7
Psat3g191240 Pisum sativum HOM05D005316 ORTHO05D006495 4.9e-07 61.2 50 56.0
CDE05G0358 Ceratophyllum demersum HOM05D005151 ORTHO05D006322 8.3e-07 60.5 181 27.1
Carub.0004s1480 Capsella rubella HOM05D005151 ORTHO05D006322 1.9e-06 59.3 214 26.6
DCAR_024719 Daucus carota HOM05D005151 ORTHO05D006322 1.9e-06 59.3 181 27.6
Lj4A288G22 Lonicera japonica HOM05D005151 ORTHO05D006322 2.4e-06 58.9 176 25.6
THA.LOC104820014 Tarenaya hassleriana HOM05D005151 ORTHO05D006322 2.4e-06 58.9 176 26.7
HanXRQChr03g0063021 Helianthus annuus HOM05D005151 ORTHO05D006322 3.2e-06 58.5 176 26.1
ATR0810G196 Amborella trichopoda HOM05D002303 ORTHO05D006504 4.1e-06 58.2 179 23.5
Ciclev10010808m.g Citrus clementina HOM05D005151 ORTHO05D006322 7.0e-06 57.4 217 25.8
COL.COLO4_18151 Corchorus olitorius HOM05D005151 ORTHO05D006322 7.0e-06 57.4 183 24.0
Lsat_1_v5_gn_7_34720 Lactuca sativa HOM05D005151 ORTHO05D006322 7.0e-06 57.4 179 26.3
Oeu054828.1 Olea europaea HOM05D005151 ORTHO05D006322 7.0e-06 57.4 183 26.2
Solyc09g018520.1 Solanum lycopersicum HOM05D005316 ORTHO05D006495 7.0e-06 57.4 79 41.8
AT4G29830 Arabidopsis thaliana HOM05D005151 ORTHO05D006322 9.2e-06 57.0 214 25.7
BcaC05g24865 Brassica carinata HOM05D002303 ORTHO05D006504 9.2e-06 57.0 171 24.0
BcaC05g24944 Brassica carinata HOM05D002303 ORTHO05D006504 9.2e-06 57.0 171 24.0
A06p07370 Brassica napus HOM05D002303 ORTHO05D006504 9.2e-06 57.0 171 24.0
C05p08850 Brassica napus HOM05D002303 ORTHO05D006504 9.2e-06 57.0 171 24.0
BolC5t29633H Brassica oleracea HOM05D002303 ORTHO05D006504 9.2e-06 57.0 171 24.0
BraA06t23941Z Brassica rapa HOM05D002303 ORTHO05D006504 9.2e-06 57.0 171 24.0
Cfa003664 Carpinus fangiana HOM05D005316 ORTHO05D006495 9.2e-06 57.0 45 60.0
AUR62038818 Chenopodium quinoa HOM05D005151 ORTHO05D006322 9.2e-06 57.0 183 25.1
TWI18G0905 Tripterygium wilfordii HOM05D002303 ORTHO05D006504 9.2e-06 57.0 171 23.4


User provided reference genes

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