Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G30970 Arabidopsis lyrata HOM05D002170 ORTHO05D007478 3.8e-246 854.4 427 100.0
AT3G17810 Arabidopsis thaliana HOM05D002170 ORTHO05D007478 9.8e-242 839.7 427 97.7
CARHR093160 Cardamine hirsuta HOM05D002170 ORTHO05D007478 2.5e-237 825.1 428 95.8
Carub.0003s1752 Capsella rubella HOM05D002170 ORTHO05D007478 8.9e-235 816.6 430 95.1
Thhalv10020777m.g Eutrema salsugineum HOM05D002170 ORTHO05D007478 3.5e-231 804.7 432 92.6
Sp3g15930 Schrenkiella parvula HOM05D002170 ORTHO05D007478 1.3e-230 802.7 429 93.2
C05p48530 Brassica napus HOM05D002170 ORTHO05D007478 8.0e-228 793.5 432 91.2
BolC5t33589H Brassica oleracea HOM05D002170 ORTHO05D007478 6.8e-227 790.4 432 90.7
BcaC09g48741 Brassica carinata HOM05D002170 ORTHO05D007478 2.6e-226 788.5 428 91.8
C01p46400 Brassica napus HOM05D002170 ORTHO05D007478 1.3e-225 786.2 428 91.6
BraA05t22032Z Brassica rapa HOM05D002170 ORTHO05D007478 6.4e-225 783.9 444 88.7
A01p36570 Brassica napus HOM05D002170 ORTHO05D007478 8.3e-225 783.5 428 91.4
BcaB04g20814 Brassica carinata HOM05D002170 ORTHO05D007478 1.1e-224 783.1 431 91.2
BcaNung05883 Brassica carinata HOM05D002170 ORTHO05D007478 3.2e-224 781.6 433 90.5
BolC1t04600H Brassica oleracea HOM05D002170 ORTHO05D007478 7.0e-224 780.4 428 91.1
BcaB04g18965 Brassica carinata HOM05D002170 ORTHO05D007478 6.2e-220 767.3 431 89.1
BraA01t03721Z Brassica rapa HOM05D002170 ORTHO05D007478 1.4e-219 766.1 438 88.6
Aa31LG8G4690 Aethionema arabicum HOM05D002170 ORTHO05D007478 2.9e-217 758.4 494 79.1
A05p32010 Brassica napus HOM05D002170 ORTHO05D007478 5.4e-216 754.2 403 92.1
THA.LOC104820334 Tarenaya hassleriana HOM05D002170 ORTHO05D007478 1.7e-209 732.6 430 84.4
COL.COLO4_18962 Corchorus olitorius HOM05D002170 ORTHO05D005003 3.3e-197 691.8 431 80.0
CsaV3_1G007330 Cucumis sativus L. HOM05D002170 ORTHO05D007478 3.3e-197 691.8 426 81.5
MELO3C002149.2 Cucumis melo HOM05D002170 ORTHO05D007478 2.4e-195 685.6 426 80.8
Thecc.03G062200 Theobroma cacao HOM05D002170 ORTHO05D007478 3.1e-195 685.3 399 83.7
ClCG04G010450 Citrullus lanatus HOM05D002170 ORTHO05D007478 4.0e-195 684.9 430 80.2
Glyma.07G105400 Glycine max HOM05D002170 ORTHO05D007478 4.0e-195 684.9 396 84.1
CANSAT35G0706 Cannabis sativa HOM05D002170 ORTHO05D007478 1.2e-194 683.3 430 79.8
Gohir.A09G175200 Gossypium hirsutum HOM05D002170 ORTHO05D007478 2.0e-194 682.6 395 84.3
Gorai.006G191200 Gossypium raimondii HOM05D002170 ORTHO05D007478 2.0e-194 682.6 395 84.3
Cfa020634 Carpinus fangiana HOM05D002170 ORTHO05D007478 2.6e-194 682.2 403 83.6
Gohir.D09G169700 Gossypium hirsutum HOM05D002170 ORTHO05D007478 2.6e-194 682.2 395 84.6
Potri.015G030600 Populus trichocarpa HOM05D002170 ORTHO05D007478 4.5e-194 681.4 382 86.6
Cpa.g.sc3.360 Carica papaya HOM05D002170 ORTHO05D007478 5.8e-194 681.0 433 78.5
Lalb_Chr14g0370711 Lupinus albus HOM05D002170 ORTHO05D007478 9.9e-194 680.2 399 84.0
Atru.BG.197.p Acer truncatum HOM05D002170 ORTHO05D007478 1.7e-193 679.5 379 87.1
Lj2g0009559 Lotus japonicus HOM05D002170 ORTHO05D007478 1.7e-193 679.5 430 79.3
Duzib084G0411 Durio zibethinus HOM05D002170 ORTHO05D007478 2.9e-193 678.7 431 78.9
MD14G1239300 Malus domestica HOM05D002170 ORTHO05D007478 3.8e-193 678.3 429 79.3
Actinidia09052 Actinidia chinensis HOM05D002170 ORTHO05D007478 4.9e-193 677.9 386 85.0
TPR.G22320 Trifolium pratense HOM05D002170 ORTHO05D007478 4.9e-193 677.9 431 79.6
Eucgr.K02286 Eucalyptus grandis HOM05D002170 ORTHO05D007478 6.4e-193 677.6 425 79.1
Glyma.09G172700 Glycine max HOM05D002170 ORTHO05D007478 6.4e-193 677.6 396 83.8
PGR044G0130 Punica granatum HOM05D002170 ORTHO05D007478 6.4e-193 677.6 411 81.0
MD06G1232500 Malus domestica HOM05D002170 ORTHO05D007478 8.4e-193 677.2 410 81.7
Sabra15G0025500 Salix brachista HOM05D002170 ORTHO05D007478 8.4e-193 677.2 432 79.4
Ca_25357_v3 Cicer arietinum L. HOM05D002170 ORTHO05D007478 1.9e-192 676.0 432 78.0
Haze_18913 Corylus avellana HOM05D002170 ORTHO05D007478 1.9e-192 676.0 402 82.8
Duzib068G1477 Durio zibethinus HOM05D002170 ORTHO05D007478 1.9e-192 676.0 431 78.7
Hund22449 Selenicereus undatus HOM05D002170 ORTHO05D007478 1.9e-192 676.0 420 79.0
TAR629G0118 Trochodendron aralioides HOM05D002170 ORTHO05D007478 5.4e-192 674.5 429 78.8
Sed0008892 Sechium edule HOM05D002170 ORTHO05D007478 7.1e-192 674.1 431 79.4
Ciclev10020301m.g Citrus clementina HOM05D002170 ORTHO05D007478 9.3e-192 673.7 416 79.1
EL10Ac2g03531 Beta vulgaris HOM05D002170 ORTHO05D007478 1.2e-191 673.3 413 79.2
TWI81G0098 Tripterygium wilfordii HOM05D002170 ORTHO05D007478 1.2e-191 673.3 430 78.4
CSS0042449 Camellia sinensis var. sinensis HOM05D002170 ORTHO05D007478 1.6e-191 672.9 386 83.7
Hma1.2p1_0471F.1_g159440 Hydrangea macrophylla HOM05D002170 ORTHO05D007478 1.6e-191 672.9 401 83.0
SalBow5G3655 Salvia bowleyana HOM05D002170 ORTHO05D007478 1.6e-191 672.9 412 80.6
CSS0009402 Camellia sinensis var. sinensis HOM05D002170 ORTHO05D007478 2.1e-191 672.5 386 83.7
Lalb_Chr22g0353421 Lupinus albus HOM05D002170 ORTHO05D007478 2.1e-191 672.5 433 78.1
Prupe.5G236800 Prunus persica HOM05D002170 ORTHO05D007478 2.1e-191 672.5 397 82.4
Medtr6g071210 Medicago truncatula HOM05D002170 ORTHO05D007478 3.5e-191 671.8 430 78.4
CiPaw.16G097200 Carya illinoinensis HOM05D002170 ORTHO05D007478 6.0e-191 671.0 431 79.1
arahy.Tifrunner.gnm1.ann1.U6RNCV Arachis hypogaea HOM05D002170 ORTHO05D007478 7.9e-191 670.6 434 77.2
Manes.06G002900 Manihot esculenta HOM05D002170 ORTHO05D007478 7.9e-191 670.6 432 78.5
CDE06G2490 Ceratophyllum demersum HOM05D002170 ORTHO05D007478 1.0e-190 670.2 422 77.5
vmacro17769 Vaccinium macrocarpon HOM05D002170 ORTHO05D007478 1.0e-190 670.2 435 77.5
arahy.Tifrunner.gnm1.ann1.DTQ5EB Arachis hypogaea HOM05D002170 ORTHO05D007478 1.3e-190 669.8 434 77.0
Phvul.004G148000 Phaseolus vulgaris HOM05D002170 ORTHO05D007478 1.3e-190 669.8 395 82.8
QL10p031496 Quercus lobata HOM05D002170 ORTHO05D007478 1.3e-190 669.8 431 78.7
RcHm_v2.0_Chr7g0177971 Rosa chinensis HOM05D002170 ORTHO05D007478 1.3e-190 669.8 399 82.5
Ah.16g108010 Amaranthus hybridus HOM05D002170 ORTHO05D007478 3.0e-190 668.7 406 80.5
Migut.D01219 Erythranthe guttata HOM05D002170 ORTHO05D007478 3.0e-190 668.7 429 78.8
Aqoxy3G04073 Aquilegia oxysepala HOM05D002170 ORTHO05D007478 1.1e-189 666.8 396 82.3
Rhsim08G0127800 Rhododendron simsii HOM05D002170 ORTHO05D007478 1.1e-189 666.8 431 78.0
MSTRG.9351 Avicennia marina HOM05D002170 ORTHO05D007478 1.5e-189 666.4 420 78.8
Os02g0736400 Oryza sativa ssp. japonica HOM05D002170 ORTHO05D007478 1.9e-189 666.0 385 83.9
HanXRQChr16g0511571 Helianthus annuus HOM05D002170 ORTHO05D007478 5.6e-189 664.5 427 78.0
Sc04g0004500 Simmondsia chinensis HOM05D002170 ORTHO05D007478 7.4e-189 664.1 396 81.3
FvH4_5g17680 Fragaria vesca HOM05D002170 ORTHO05D007478 9.6e-189 663.7 397 81.9
FAN18G3495 Fragaria x ananassa HOM05D002170 ORTHO05D007478 1.3e-188 663.3 397 81.6
CAN.G637.44 Capsicum annuum HOM05D002170 ORTHO05D007478 1.6e-188 662.9 407 80.8
HanXRQChr15g0492101 Helianthus annuus HOM05D002170 ORTHO05D007478 4.8e-188 661.4 419 78.3
ECA232G0406 Erigeron canadensis HOM05D002170 ORTHO05D007478 8.1e-188 660.6 386 82.9
AUR62041617 Chenopodium quinoa HOM05D002170 ORTHO05D007478 2.4e-187 659.1 394 80.5
FAN08G0558 Fragaria x ananassa HOM05D002170 ORTHO05D007478 3.1e-187 658.7 397 81.4
Zm00001eb253890 Zea mays HOM05D002170 ORTHO05D007478 3.1e-187 658.7 403 80.4
PGSC0003DMG400033683 Solanum tuberosum HOM05D002170 ORTHO05D007478 4.0e-187 658.3 430 76.7
SEGI_10571 Sequoiadendron giganteum HOM05D002170 ORTHO05D007478 6.9e-187 657.5 434 76.5
GSVIVG01008478001 Vitis vinifera HOM05D002170 ORTHO05D007478 6.9e-187 657.5 367 86.1
FAN04G0031 Fragaria x ananassa HOM05D002170 ORTHO05D007478 9.0e-187 657.1 430 76.5
Lj9C416G6 Lonicera japonica HOM05D002170 ORTHO05D007478 9.0e-187 657.1 413 79.4
Sopen03g028630 Solanum pennellii HOM05D002170 ORTHO05D007478 1.5e-186 656.4 430 76.7
HPP92_007961 Vanilla planifolia HOM05D002170 ORTHO05D007478 1.5e-186 656.4 407 80.3
Lsat_1_v5_gn_0_10461 Lactuca sativa HOM05D002170 ORTHO05D007478 2.0e-186 656.0 427 77.8
Solyc03g097910.4 Solanum lycopersicum HOM05D002170 ORTHO05D007478 2.0e-186 656.0 430 76.7
PSO339G1858 Papaver somniferum HOM05D002170 ORTHO05D007478 4.5e-186 654.8 407 79.4
PSO384G2182 Papaver somniferum HOM05D002170 ORTHO05D007478 4.5e-186 654.8 407 79.4
Cc04_g09360 Coffea canephora HOM05D002170 ORTHO05D007478 7.6e-186 654.1 432 75.2
CiPaw.15G147300 Carya illinoinensis HOM05D002170 ORTHO05D007478 1.1e-184 650.2 368 85.9
ATR0118G019 Amborella trichopoda HOM05D002170 ORTHO05D007478 5.5e-184 647.9 408 78.4
Oeu023513.1 Olea europaea HOM05D002170 ORTHO05D007478 7.1e-184 647.5 432 75.0
DCAR_003532 Daucus carota HOM05D002170 ORTHO05D007478 2.1e-183 646.0 421 77.0
Peaxi162Scf00171g01030 Petunia axillaris HOM05D002170 ORTHO05D007478 1.8e-182 642.9 432 76.6
Atru.chr9.1597 Acer truncatum HOM05D002170 ORTHO05D007478 5.6e-181 637.9 365 85.2
AUR62036004 Chenopodium quinoa HOM05D002170 ORTHO05D007478 1.5e-178 629.8 367 82.0
AagrBONN_evm.TU.Sc2ySwM_362.1270 Anthoceros agrestis HOM05D002170 ORTHO05D007478 3.4e-178 628.6 434 71.0
Pp3c20_21870 Physcomitrium patens HOM05D002170 ORTHO05D007478 2.5e-176 622.5 429 71.1
Nitab4.5_0000430g0180 Nicotiana tabacum HOM05D002170 ORTHO05D007478 9.3e-176 620.5 433 74.8
Nitab4.5_0006581g0020 Nicotiana tabacum HOM05D002170 ORTHO05D007478 2.1e-175 619.4 431 74.9
BcaC01g03730 Brassica carinata HOM05D002170 ORTHO05D007478 2.7e-175 619.0 422 76.8
Pp3c23_13670 Physcomitrium patens HOM05D002170 ORTHO05D007478 5.1e-174 614.8 422 71.6
SMO356G0689 Selaginella moellendorffii HOM05D002170 ORTHO05D007478 1.3e-172 610.1 394 74.6
Mapoly0033s0018 Marchantia polymorpha HOM05D002170 ORTHO05D007478 3.1e-171 605.5 389 76.9
Dinv05998 Davidia involucrata HOM05D002170 ORTHO05D007478 1.2e-167 593.6 384 77.6
Psat1g029560 Pisum sativum HOM05D002170 ORTHO05D007478 3.9e-166 588.6 380 77.6
CBR_g39071 Chara braunii HOM05D002170 ORTHO05D007478 2.1e-159 566.2 386 69.4
MCO10G163 Micromonas commoda HOM05D002170 ORTHO05D007478 3.9e-158 562.0 379 72.3
C03p49210 Brassica napus HOM05D002170 ORTHO05D007478 1.1e-155 553.9 442 68.3
SHI19063 Sapria himalayana HOM05D002170 ORTHO05D007478 2.1e-151 539.7 335 76.4
MBI19_g09384_MAGBIO Magnolia biondii HOM05D003263 ORTHO05D004801 1.0e-150 537.3 341 80.1
PRCOL_00005290 Prasinoderma coloniale HOM05D002170 ORTHO05D007478 5.2e-150 535.0 368 70.4
CDE04G1365 Ceratophyllum demersum HOM05D002170 ORTHO05D007478 2.0e-149 533.1 383 69.7
Cre13.g578750 Chlamydomonas reinhardtii HOM05D002170 ORTHO05D007478 7.0e-147 524.6 386 65.5
BolC3t17203H Brassica oleracea HOM05D002170 ORTHO05D007478 4.0e-142 508.8 299 84.9
unitig_27.g25082 Utricularia gibba HOM05D002170 ORTHO05D007478 2.6e-133 479.6 288 80.9
Potri.012G043300 Populus trichocarpa HOM05D002170 ORTHO05D007478 3.5e-106 389.4 267 74.2
Oeu016182.1 Olea europaea HOM05D002170 ORTHO05D007478 4.9e-100 369.0 280 68.2
Haze_26546 Corylus avellana HOM05D002170 ORTHO05D007478 2.6e-69 266.9 352 40.6
Haze_27328 Corylus avellana HOM05D002170 ORTHO05D007478 5.8e-69 265.8 333 41.7
SGA_v2.0_scaffold40G15643 Striga asiatica HOM05D002170 ORTHO05D007478 2.8e-63 246.9 171 75.4
SGA_v2.0_scaffold1356G53925 Striga asiatica HOM05D002170 ORTHO05D007478 7.4e-48 195.7 118 80.5
Solyc02g044040.3 Solanum lycopersicum HOM05D002170 ORTHO05D390875 3.8e-44 183.3 113 75.2
BraA03t13196Z Brassica rapa HOM05D002170 ORTHO05D023792 4.1e-38 163.3 84 92.9
A03p40410 Brassica napus HOM05D002170 ORTHO05D023792 7.7e-37 159.1 84 89.3
Phvul.008G096200 Phaseolus vulgaris HOM05D002170 ORTHO05D023792 3.5e-29 133.7 84 73.8
Psat3g071120 Pisum sativum HOM05D002170 ORTHO05D327785 1.8e-25 121.3 125 56.8
Ca_22557_v3 Cicer arietinum L. HOM05D002170 ORTHO05D148971 6.3e-23 112.8 57 86.0
unitig_27.g25081 Utricularia gibba HOM05D002170 ORTHO05D007478 2.0e-21 107.8 62 83.9
MSTRG.4628 Avicennia marina HOM05D002170 ORTHO05D023792 1.0e-20 105.5 80 65.0
BolC3t17202H Brassica oleracea HOM05D000003 ORTHO05D001498 4.2e-19 100.1 75 76.0
Pp3s46_240 Physcomitrium patens HOM05D003658 ORTHO05D004457 2.6e-16 90.9 272 30.1
MD05G1052900 Malus domestica HOM05D002170 ORTHO05D000222 3.7e-15 87.0 78 61.5
BcaB04g18967 Brassica carinata HOM05D002170 ORTHO05D023792 2.9e-12 77.4 65 64.6
Ca_03420_v3 Cicer arietinum L. HOM05D002170 ORTHO05D148646 3.0e-09 67.4 40 72.5


User provided reference genes

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