Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G27010 Arabidopsis lyrata HOM05D003241 ORTHO05D003812 2.4e-102 375.6 198 100.0
AT3G14700 Arabidopsis thaliana HOM05D003241 ORTHO05D003812 8.1e-90 334.0 199 88.9
Thhalv10022422m.g Eutrema salsugineum HOM05D003241 ORTHO05D003812 1.8e-60 236.5 203 67.5
A05p34740 Brassica napus HOM05D003241 ORTHO05D003812 2.4e-57 226.1 213 68.1
BraA05t22289Z Brassica rapa HOM05D003241 ORTHO05D003812 3.4e-56 222.2 212 67.9
Carub.0003s1438 Capsella rubella HOM05D003241 ORTHO05D003812 7.4e-51 204.5 207 61.8
BcaB06g25362 Brassica carinata HOM05D003241 ORTHO05D003812 4.8e-50 201.8 201 63.7
BcaC05g29043 Brassica carinata HOM05D003241 ORTHO05D003812 1.1e-43 180.6 198 57.1
C05p52560 Brassica napus HOM05D003241 ORTHO05D003812 2.0e-32 143.3 121 67.8
Duzib213G0093 Durio zibethinus HOM05D003241 ORTHO05D003812 9.1e-25 117.9 164 45.7
Aa31LG8G1930 Aethionema arabicum HOM05D003241 ORTHO05D000015 1.6e-24 117.1 194 42.8
AL6G27800 Arabidopsis lyrata HOM05D003241 ORTHO05D003812 3.5e-24 115.9 150 46.0
Manes.16G074400 Manihot esculenta HOM05D003241 ORTHO05D003812 3.5e-24 115.9 210 41.0
Duzib268G1256 Durio zibethinus HOM05D003241 ORTHO05D003812 4.5e-24 115.5 189 42.3
CARHR196380 Cardamine hirsuta HOM05D003241 ORTHO05D003812 7.7e-24 114.8 150 46.0
Gohir.D05G337200 Gossypium hirsutum HOM05D003241 ORTHO05D003812 7.7e-24 114.8 151 47.0
Gorai.009G361400 Gossypium raimondii HOM05D003241 ORTHO05D003812 7.7e-24 114.8 151 47.0
Carub.0006s1500 Capsella rubella HOM05D003241 ORTHO05D003812 1.3e-23 114.0 165 43.6
AT5G16780 Arabidopsis thaliana HOM05D003241 ORTHO05D003812 3.8e-23 112.5 155 45.2
Cpa.g.sc115.47 Carica papaya HOM05D003241 ORTHO05D003812 3.8e-23 112.5 210 41.0
Gohir.A04G045600 Gossypium hirsutum HOM05D003241 ORTHO05D003812 3.8e-23 112.5 189 41.3
Solyc11g008470.2 Solanum lycopersicum HOM05D003241 ORTHO05D003812 1.1e-22 110.9 148 46.6
Sopen11g004250 Solanum pennellii HOM05D003241 ORTHO05D003812 1.1e-22 110.9 148 46.6
Aa31LG11G12850 Aethionema arabicum HOM05D003241 ORTHO05D003812 1.5e-22 110.5 149 46.3
Phvul.011G184800 Phaseolus vulgaris HOM05D003241 ORTHO05D003812 1.9e-22 110.2 150 46.7
Glyma.07G220800 Glycine max HOM05D003241 ORTHO05D003812 2.5e-22 109.8 150 48.0
Glyma.08G229600 Glycine max HOM05D003241 ORTHO05D003812 3.2e-22 109.4 150 47.3
Thhalv10012684m.g Eutrema salsugineum HOM05D003241 ORTHO05D003812 4.2e-22 109.0 185 40.0
PGSC0003DMG400007426 Solanum tuberosum HOM05D003241 ORTHO05D003812 4.2e-22 109.0 148 45.9
TWI32G0731 Tripterygium wilfordii HOM05D003241 ORTHO05D003812 4.2e-22 109.0 151 45.0
BcaC04g18848 Brassica carinata HOM05D003241 ORTHO05D003812 5.5e-22 108.6 149 45.6
A10p22440 Brassica napus HOM05D003241 ORTHO05D003812 5.5e-22 108.6 149 45.6
BraA10t44303Z Brassica rapa HOM05D003241 ORTHO05D003812 5.5e-22 108.6 149 45.6
COL.COLO4_17461 Corchorus olitorius HOM05D003241 ORTHO05D003812 7.2e-22 108.2 157 45.2
Lalb_Chr19g0130441 Lupinus albus HOM05D003241 ORTHO05D003812 7.2e-22 108.2 184 41.8
Nitab4.5_0004385g0020 Nicotiana tabacum HOM05D003241 ORTHO05D003812 7.2e-22 108.2 148 46.6
C09p60290 Brassica napus HOM05D003241 ORTHO05D003812 9.4e-22 107.8 173 42.2
Ciclev10000233m.g Citrus clementina HOM05D003241 ORTHO05D003812 1.2e-21 107.5 148 44.6
Lalb_Chr03g0032261 Lupinus albus HOM05D003241 ORTHO05D003812 1.2e-21 107.5 186 41.4
Potri.001G082100 Populus trichocarpa HOM05D003241 ORTHO05D003812 1.2e-21 107.5 182 40.1
arahy.Tifrunner.gnm1.ann1.2W1DSR Arachis hypogaea HOM05D003241 ORTHO05D003812 1.6e-21 107.1 150 45.3
arahy.Tifrunner.gnm1.ann1.61N80Q Arachis hypogaea HOM05D003241 ORTHO05D003812 1.6e-21 107.1 150 45.3
BcaC04g18849 Brassica carinata HOM05D003241 ORTHO05D003812 2.1e-21 106.7 177 41.8
BolC9t58862H Brassica oleracea HOM05D003241 ORTHO05D003812 2.1e-21 106.7 177 41.8
CAN.G321.38 Capsicum annuum HOM05D003241 ORTHO05D003812 2.7e-21 106.3 148 45.3
Lj3g0022607 Lotus japonicus HOM05D003241 ORTHO05D003812 3.6e-21 105.9 185 41.1
Nitab4.5_0004325g0020 Nicotiana tabacum HOM05D003241 ORTHO05D003812 3.6e-21 105.9 148 45.9
Rhsim01G0112900 Rhododendron simsii HOM05D003241 ORTHO05D003812 4.7e-21 105.5 151 46.4
Zm00001eb140630 Zea mays HOM05D003241 ORTHO05D003812 4.7e-21 105.5 148 42.6
Ca_13374_v3 Cicer arietinum L. HOM05D003241 ORTHO05D003812 6.1e-21 105.1 151 46.4
Hund17599 Selenicereus undatus HOM05D003241 ORTHO05D003812 6.1e-21 105.1 153 45.1
GSVIVG01035173001 Vitis vinifera HOM05D003241 ORTHO05D003812 6.1e-21 105.1 141 46.8
ATR1098G045 Amborella trichopoda HOM05D003241 ORTHO05D003812 8.0e-21 104.8 164 43.3
COL.COLO4_13873 Corchorus olitorius HOM05D003241 ORTHO05D003812 1.0e-20 104.4 163 42.3
DCAR_019828 Daucus carota HOM05D003241 ORTHO05D003812 1.0e-20 104.4 141 46.1
Medtr1g083910 Medicago truncatula HOM05D003241 ORTHO05D003812 1.0e-20 104.4 150 44.7
vmacro13976 Vaccinium macrocarpon HOM05D003241 ORTHO05D003812 1.4e-20 104.0 151 44.4
Os02g0511500 Oryza sativa ssp. japonica HOM05D003241 ORTHO05D003812 1.8e-20 103.6 148 41.9
Dinv09319 Davidia involucrata HOM05D003241 ORTHO05D003812 3.0e-20 102.8 151 44.4
Dinv19008 Davidia involucrata HOM05D003241 ORTHO05D003812 3.0e-20 102.8 151 44.4
TAR381G1550 Trochodendron aralioides HOM05D003241 ORTHO05D003812 4.0e-20 102.4 141 46.8
TAR571G0002 Trochodendron aralioides HOM05D003241 ORTHO05D003812 5.2e-20 102.1 141 46.1
TAR625G1302 Trochodendron aralioides HOM05D003241 ORTHO05D003812 5.2e-20 102.1 141 46.1
Eucgr.J03092 Eucalyptus grandis HOM05D003241 ORTHO05D003812 6.8e-20 101.7 148 45.9
vmacro19775 Vaccinium macrocarpon HOM05D003241 ORTHO05D003812 6.8e-20 101.7 151 43.7
Atru.chr4.2711 Acer truncatum HOM05D003241 ORTHO05D003812 8.8e-20 101.3 195 37.9
Cfa015650 Carpinus fangiana HOM05D003241 ORTHO05D003812 8.8e-20 101.3 214 36.4
TPR.G2613 Trifolium pratense HOM05D003241 ORTHO05D003812 8.8e-20 101.3 141 46.1
CsaV3_5G040300 Cucumis sativus L. HOM05D003241 ORTHO05D003812 1.2e-19 100.9 187 37.4
Lsat_1_v5_gn_1_54260 Lactuca sativa HOM05D003241 ORTHO05D003812 1.2e-19 100.9 185 40.0
HPP92_003413 Vanilla planifolia HOM05D003241 ORTHO05D008621 1.2e-19 100.9 146 43.8
MELO3C022204.2 Cucumis melo HOM05D003241 ORTHO05D003812 1.5e-19 100.5 187 37.4
SMO361G0171 Selaginella moellendorffii HOM05D003241 ORTHO05D003812 1.5e-19 100.5 208 36.1
Haze_00894 Corylus avellana HOM05D003241 ORTHO05D003812 2.0e-19 100.1 214 36.4
Nn5g27739 Nelumbo nucifera HOM05D003241 ORTHO05D003812 2.0e-19 100.1 141 44.7
HanXRQChr09g0244631 Helianthus annuus HOM05D003241 ORTHO05D003812 3.4e-19 99.4 153 43.1
Lj2C819G2 Lonicera japonica HOM05D003241 ORTHO05D003812 3.4e-19 99.4 148 42.6
PGR031G3475 Punica granatum HOM05D003241 ORTHO05D003812 3.4e-19 99.4 171 41.5
Actinidia29972 Actinidia chinensis HOM05D003241 ORTHO05D003812 4.4e-19 99.0 151 43.0
AagrBONN_evm.TU.Sc2ySwM_344.1153__1154 Anthoceros agrestis HOM05D003241 ORTHO05D003812 4.4e-19 99.0 138 45.7
Aqoxy4G03221 Aquilegia oxysepala HOM05D003241 ORTHO05D003812 4.4e-19 99.0 141 43.3
EL10Ac6g15598 Beta vulgaris HOM05D003241 ORTHO05D003812 5.7e-19 98.6 195 38.5
CiPaw.02G097400 Carya illinoinensis HOM05D003241 ORTHO05D003812 5.7e-19 98.6 214 36.9
ECA248G0833 Erigeron canadensis HOM05D003241 ORTHO05D003812 5.7e-19 98.6 167 41.3
MBI18_g28212_MAGBIO Magnolia biondii HOM05D003241 ORTHO05D003812 5.7e-19 98.6 141 46.1
Oeu058578.1 Olea europaea HOM05D003241 ORTHO05D003812 5.7e-19 98.6 207 36.7
SEGI_01763 Sequoiadendron giganteum HOM05D003241 ORTHO05D003812 5.7e-19 98.6 217 35.0
Thecc.07G135300 Theobroma cacao HOM05D003241 ORTHO05D003812 9.8e-19 97.8 151 42.4
FAN27G2894 Fragaria x ananassa HOM05D003241 ORTHO05D003812 1.3e-18 97.4 184 40.2
AUR62034840 Chenopodium quinoa HOM05D003241 ORTHO05D003812 1.7e-18 97.1 208 36.1
ClCG08G000490 Citrullus lanatus HOM05D003241 ORTHO05D003812 1.7e-18 97.1 221 33.9
AUR62018246 Chenopodium quinoa HOM05D003241 ORTHO05D003812 2.2e-18 96.7 186 38.2
QL06p002249 Quercus lobata HOM05D003241 ORTHO05D003812 2.8e-18 96.3 214 36.0
QL06p002393 Quercus lobata HOM05D003241 ORTHO05D003812 2.8e-18 96.3 214 36.0
RcHm_v2.0_Chr4g0416161 Rosa chinensis HOM05D003241 ORTHO05D003812 2.8e-18 96.3 184 39.1
Sed0020388 Sechium edule HOM05D003241 ORTHO05D003812 3.7e-18 95.9 158 41.1
vmacro19776 Vaccinium macrocarpon HOM05D003241 ORTHO05D003812 3.7e-18 95.9 151 41.1
FvH4_4g15641 Fragaria vesca HOM05D003241 ORTHO05D003812 4.8e-18 95.5 184 40.2
FAN12G3728 Fragaria x ananassa HOM05D003241 ORTHO05D003812 4.8e-18 95.5 184 40.2
FAN20G2531 Fragaria x ananassa HOM05D003241 ORTHO05D003812 8.3e-18 94.7 185 40.0
Oeu011820.1 Olea europaea HOM05D003241 ORTHO05D003812 8.3e-18 94.7 207 35.7
FAN17G1371 Fragaria x ananassa HOM05D003241 ORTHO05D003812 1.1e-17 94.4 184 39.7
RcHm_v2.0_Chr4g0416151 Rosa chinensis HOM05D003241 ORTHO05D003812 1.8e-17 93.6 184 39.1
Prupe.1G014100 Prunus persica HOM05D003241 ORTHO05D003812 3.1e-17 92.8 238 33.2
ECA248G0244 Erigeron canadensis HOM05D003241 ORTHO05D003812 4.1e-17 92.4 167 37.7
Migut.J00827 Erythranthe guttata HOM05D003241 ORTHO05D003812 4.1e-17 92.4 148 39.9
MD13G1193700 Malus domestica HOM05D003241 ORTHO05D003812 7.0e-17 91.7 179 36.9
Medtr1g032020 Medicago truncatula HOM05D003241 ORTHO05D003812 7.0e-17 91.7 210 37.6
Medtr1g032350 Medicago truncatula HOM05D003241 ORTHO05D003812 7.0e-17 91.7 210 37.6
FAN15G1779 Fragaria x ananassa HOM05D003241 ORTHO05D003812 9.1e-17 91.3 236 34.3
Mapoly0063s0006 Marchantia polymorpha HOM05D003241 ORTHO05D003812 1.2e-16 90.9 136 43.4
Psat6g151960 Pisum sativum HOM05D003241 ORTHO05D003812 1.6e-16 90.5 143 42.0
Pp3c15_10170 Physcomitrium patens HOM05D003241 ORTHO05D003812 2.0e-16 90.1 138 42.0
SalBow3G1087 Salvia bowleyana HOM05D003241 ORTHO05D003812 7.7e-16 88.2 193 38.3
SGA_v2.0_scaffold31G12724 Striga asiatica HOM05D003241 ORTHO05D003812 7.7e-16 88.2 148 38.5
Sp3g12930 Schrenkiella parvula HOM05D003241 ORTHO05D003812 1.0e-15 87.8 164 42.1
CBR_g32002 Chara braunii HOM05D003241 ORTHO05D003812 1.3e-15 87.4 139 40.3
Peaxi162Scf00296g00721 Petunia axillaris HOM05D003241 ORTHO05D003812 1.3e-15 87.4 148 41.2
MD16G1194300 Malus domestica HOM05D003241 ORTHO05D003812 1.7e-15 87.0 182 35.7
Nitab4.5_0002344g0060 Nicotiana tabacum HOM05D003241 ORTHO05D003812 1.7e-15 87.0 124 45.2
unitig_749.g14191 Utricularia gibba HOM05D003241 ORTHO05D003812 1.7e-15 87.0 190 32.6
unitig_77.g31483 Utricularia gibba HOM05D003241 ORTHO05D003812 1.7e-15 87.0 190 32.6
Eucgr.L01432 Eucalyptus grandis HOM05D003241 ORTHO05D003812 2.2e-15 86.7 126 45.2
QL09p049212 Quercus lobata HOM05D003241 ORTHO05D003812 2.9e-15 86.3 151 39.1
Lj6g0011042 Lotus japonicus HOM05D003241 ORTHO05D003812 5.0e-15 85.5 205 36.6
Nitab4.5_0014335g0020 Nicotiana tabacum HOM05D003241 ORTHO05D003812 3.2e-14 82.8 102 48.0
PGSC0003DMG400024746 Solanum tuberosum HOM05D003241 ORTHO05D003812 5.5e-14 82.0 169 36.1
RcHm_v2.0_Chr7g0234901 Rosa chinensis HOM05D003241 ORTHO05D003812 3.6e-13 79.3 180 35.0
PSO339G6261 Papaver somniferum HOM05D003241 ORTHO05D003812 4.7e-13 79.0 154 35.7
PSO013G0353 Papaver somniferum HOM05D003241 ORTHO05D003812 6.1e-13 78.6 154 35.7
PSO339G1389 Papaver somniferum HOM05D003241 ORTHO05D003812 6.1e-13 78.6 141 37.6
PSO063G3239 Papaver somniferum HOM05D003241 ORTHO05D003812 8.0e-13 78.2 154 35.7
Solyc01g099380.4 Solanum lycopersicum HOM05D003241 ORTHO05D003812 1.0e-12 77.8 151 35.8
Lj2A813G14 Lonicera japonica HOM05D003241 ORTHO05D003812 1.8e-12 77.0 148 36.5
Sopen01g042940 Solanum pennellii HOM05D003241 ORTHO05D003812 1.8e-12 77.0 151 33.8
Atru.chr1.2009 Acer truncatum HOM05D003241 ORTHO05D003812 3.0e-12 76.3 122 39.3
AagrBONN_evm.TU.Sc2ySwM_117.3043 Anthoceros agrestis HOM05D003241 ORTHO05D003812 1.2e-11 74.3 140 41.4
Actinidia21372 Actinidia chinensis HOM05D003241 ORTHO05D003812 3.4e-11 72.8 145 38.6
MD07G1289000 Malus domestica HOM05D003241 ORTHO05D003812 4.4e-11 72.4 121 42.1
Lju445A0T13 Lonicera japonica HOM05D003241 ORTHO05D003812 7.5e-11 71.6 103 43.7
PRCOL_00003741 Prasinoderma coloniale HOM05D003241 ORTHO05D003812 7.5e-11 71.6 129 35.7
Peaxi162Scf00067g00244 Petunia axillaris HOM05D003241 ORTHO05D003812 1.7e-10 70.5 105 41.9
AagrBONN_evm.TU.Sc2ySwM_117.3514 Anthoceros agrestis HOM05D003241 ORTHO05D003812 8.3e-10 68.2 104 44.2
Actinidia16705 Actinidia chinensis HOM05D003241 ORTHO05D003812 1.4e-09 67.4 107 42.1
Rhsim06G0183100 Rhododendron simsii HOM05D003241 ORTHO05D003812 3.1e-09 66.2 90 41.1
Rhsim06G0182100 Rhododendron simsii HOM05D003241 ORTHO05D003812 1.6e-08 63.9 90 40.0
Eucgr.L02270 Eucalyptus grandis HOM05D001083 ORTHO05D003812 5.9e-08 62.0 91 41.8
SMO111G0075 Selaginella moellendorffii HOM05D003241 ORTHO05D003812 1.3e-07 60.8 120 37.5
Migut.N01793 Erythranthe guttata HOM05D003241 ORTHO05D003812 3.8e-07 59.3 133 35.3
CDE03G0251 Ceratophyllum demersum HOM05D003241 ORTHO05D003812 5.0e-07 58.9 136 33.8
MCO08G320 Micromonas commoda HOM05D003241 ORTHO05D003812 5.0e-07 58.9 143 31.5
Actinidia38515 Actinidia chinensis HOM05D003241 ORTHO05D003812 6.6e-07 58.5 102 39.2
CSS0028609 Camellia sinensis var. sinensis HOM05D003241 ORTHO05D003812 6.6e-07 58.5 91 40.7
Haze_08784 Corylus avellana HOM05D003241 ORTHO05D003812 8.6e-07 58.2 69 49.3
Cre03.g156100 Chlamydomonas reinhardtii HOM05D003241 ORTHO05D003812 9.5e-06 54.7 145 31.0


User provided reference genes

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