Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G23800 Arabidopsis lyrata HOM05D004976 ORTHO05D004851 1.2e-82 309.7 143 100.0
AT1G04625 Arabidopsis thaliana HOM05D004976 ORTHO05D004851 1.4e-46 189.9 126 62.7
AT1G47497 Arabidopsis thaliana HOM05D004976 ORTHO05D004851 4.1e-43 178.3 136 56.6
CARHR043800 Cardamine hirsuta HOM05D004976 ORTHO05D004851 7.0e-43 177.6 135 54.8
AT2G46460 Arabidopsis thaliana HOM05D004976 ORTHO05D004851 1.0e-41 173.7 136 54.4
AT2G04420 Arabidopsis thaliana HOM05D004976 ORTHO05D004851 6.5e-41 171.0 132 56.1
AT3G25270 Arabidopsis thaliana HOM05D004976 ORTHO05D004851 7.2e-40 167.5 134 55.2
AL8G15920 Arabidopsis lyrata HOM05D004976 ORTHO05D004851 3.6e-39 165.2 130 55.4
CARHR123710 Cardamine hirsuta HOM05D004976 ORTHO05D004851 2.0e-37 159.5 135 51.1
BraA02t07436Z Brassica rapa HOM05D004976 ORTHO05D004851 2.6e-37 159.1 141 51.8
AT1G27870 Arabidopsis thaliana HOM05D004976 ORTHO05D004851 4.4e-37 158.3 135 50.4
BraA01t02778Z Brassica rapa HOM05D004976 ORTHO05D004851 7.5e-37 157.5 141 52.5
AT2G33160 Arabidopsis thaliana HOM05D000037 ORTHO05D000150 1.7e-36 156.4 140 49.3
BolC2t08499H Brassica oleracea HOM05D004976 ORTHO05D004851 1.7e-36 156.4 137 48.9
BolC8t48401H Brassica oleracea HOM05D004976 ORTHO05D004851 4.9e-36 154.8 141 51.8
C05p50100 Brassica napus HOM05D004976 ORTHO05D004851 8.3e-36 154.1 141 51.8
Sp5g16840 Schrenkiella parvula HOM05D004976 ORTHO05D004851 2.0e-34 149.4 141 48.2
BolC1t02896H Brassica oleracea HOM05D004976 ORTHO05D004851 5.9e-34 147.9 128 50.0
A10p08070 Brassica napus HOM05D004976 ORTHO05D004851 7.8e-34 147.5 134 46.3
Thhalv10019506m.g Eutrema salsugineum HOM05D004976 ORTHO05D004851 1.0e-33 147.1 136 47.1
A09p37980 Brassica napus HOM05D004976 ORTHO05D004851 6.6e-33 144.4 134 45.5
BolC7t41689H Brassica oleracea HOM05D004976 ORTHO05D004851 1.5e-32 143.3 136 50.7
BolC5t29232H Brassica oleracea HOM05D004976 ORTHO05D004851 2.5e-32 142.5 136 47.8
BolC6t38560H Brassica oleracea HOM05D004976 ORTHO05D004851 4.3e-32 141.7 140 45.7
BolC5t31734H Brassica oleracea HOM05D004976 ORTHO05D004851 9.5e-32 140.6 140 45.0
BraA03t14020Z Brassica rapa HOM05D004976 ORTHO05D004851 1.2e-31 140.2 130 51.5
BraA09t38717Z Brassica rapa HOM05D004976 ORTHO05D004851 1.6e-31 139.8 134 49.3
BraA07t29876Z Brassica rapa HOM05D004976 ORTHO05D004851 1.8e-30 136.3 115 47.8
BraA07t27820Z Brassica rapa HOM05D000207 ORTHO05D001673 3.0e-30 135.6 139 44.6
C09p05940 Brassica napus HOM05D004976 ORTHO05D004851 4.0e-30 135.2 134 47.8
BolC9t53519H Brassica oleracea HOM05D004976 ORTHO05D004851 4.0e-30 135.2 134 47.8
C08p26150 Brassica napus HOM05D004976 ORTHO05D004851 8.9e-30 134.0 138 45.7
BolC8t51211H Brassica oleracea HOM05D004976 ORTHO05D004851 1.2e-29 133.7 139 44.6
BraA06t23723Z Brassica rapa HOM05D004976 ORTHO05D004851 9.8e-29 130.6 136 41.2
Carub.0004s1022 Capsella rubella HOM05D004976 ORTHO05D004851 1.4e-27 126.7 135 43.7
BolC9t55739H Brassica oleracea HOM05D004976 ORTHO05D004851 9.2e-27 124.0 107 45.8
Sp4g00970 Schrenkiella parvula HOM05D004976 ORTHO05D004851 2.0e-26 122.9 123 44.7
A02p28410 Brassica napus HOM05D004976 ORTHO05D004851 2.3e-25 119.4 136 38.2
CARHR183650 Cardamine hirsuta HOM05D004976 ORTHO05D004851 1.4e-22 110.2 84 50.0
BolC2t07249H Brassica oleracea HOM05D004976 ORTHO05D004851 1.8e-22 109.8 100 49.0
C05p45240 Brassica napus HOM05D004976 ORTHO05D004851 4.0e-22 108.6 89 51.7
BolC9t59872H Brassica oleracea HOM05D001406 ORTHO05D002467 5.2e-22 108.2 108 42.6
BolC9t56783H Brassica oleracea HOM05D004976 ORTHO05D004851 1.2e-21 107.1 85 55.3
Sp7g06900 Schrenkiella parvula HOM05D004976 ORTHO05D004851 2.0e-21 106.3 91 51.6
AT1G27220 Arabidopsis thaliana HOM05D000629 ORTHO05D000576 2.6e-21 105.9 93 51.6
AT1G77815 Arabidopsis thaliana HOM05D004976 ORTHO05D004851 3.4e-21 105.5 96 44.8
Thhalv10027203m.g Eutrema salsugineum HOM05D004976 ORTHO05D004851 3.4e-21 105.5 100 41.0
BraA09t36601Z Brassica rapa HOM05D004976 ORTHO05D004851 4.4e-21 105.1 99 49.5
C09p00160 Brassica napus HOM05D004976 ORTHO05D004851 9.8e-21 104.0 96 42.7
BraA01t03834Z Brassica rapa HOM05D004976 ORTHO05D004851 1.3e-20 103.6 96 42.7
C03p88940 Brassica napus HOM05D004976 ORTHO05D004851 2.2e-20 102.8 96 42.7
A03p28430 Brassica napus HOM05D004976 ORTHO05D004851 6.4e-20 101.3 85 45.9
BraA03t12048Z Brassica rapa HOM05D004976 ORTHO05D004851 6.4e-20 101.3 85 45.9
BraA09t38437Z Brassica rapa HOM05D004976 ORTHO05D004851 8.3e-20 100.9 87 48.3
BolC2t08873H Brassica oleracea HOM05D004976 ORTHO05D004851 3.2e-19 99.0 138 36.2
Thhalv10003001m.g Eutrema salsugineum HOM05D004976 ORTHO05D004851 9.2e-19 97.4 106 42.5
Thhalv10015769m.g Eutrema salsugineum HOM05D004976 ORTHO05D004851 6.0e-18 94.7 131 31.3
BolC2t11077H Brassica oleracea HOM05D004976 ORTHO05D004851 7.8e-18 94.4 136 37.5
Thhalv10003059m.g Eutrema salsugineum HOM05D004976 ORTHO05D004851 3.0e-17 92.4 97 42.3
Thhalv10022287m.g Eutrema salsugineum HOM05D004976 ORTHO05D004851 3.9e-17 92.0 135 36.3
Sp1g19240 Schrenkiella parvula HOM05D004976 ORTHO05D004851 3.9e-17 92.0 79 48.1
AT5G43755 Arabidopsis thaliana HOM05D004976 ORTHO05D004851 5.6e-16 88.2 135 33.3
BraA01t00584Z Brassica rapa HOM05D004976 ORTHO05D004851 5.6e-16 88.2 97 40.2
BolC1t01989H Brassica oleracea HOM05D004976 ORTHO05D004851 1.6e-15 86.7 129 33.3
BcaB02g10660 Brassica carinata HOM05D000003 ORTHO05D000004 3.6e-15 85.5 109 36.7
Sp6g11330 Schrenkiella parvula HOM05D004976 ORTHO05D004851 6.2e-15 84.7 73 50.7
BolC9t56103H Brassica oleracea HOM05D004976 ORTHO05D004851 8.1e-15 84.3 129 33.3
C09p45640 Brassica napus HOM05D004976 ORTHO05D004851 1.1e-14 84.0 126 32.5
AL1G41300 Arabidopsis lyrata HOM05D004976 ORTHO05D004851 2.3e-14 82.8 101 37.6
BcaB08g35528 Brassica carinata HOM05D004976 ORTHO05D004851 2.3e-14 82.8 131 31.3
C05p41910 Brassica napus HOM05D004976 ORTHO05D004851 4.0e-14 82.0 69 49.3
BcaC01g03112 Brassica carinata HOM05D000003 ORTHO05D004851 5.2e-14 81.6 105 38.1
BcaB01g00479 Brassica carinata HOM05D000003 ORTHO05D004851 6.8e-14 81.3 105 36.2
C08p27020 Brassica napus HOM05D004976 ORTHO05D004851 6.8e-14 81.3 105 36.2
Aa31LG1G4960 Aethionema arabicum HOM05D000003 ORTHO05D000004 8.9e-14 80.9 139 30.2
AL3G31830 Arabidopsis lyrata HOM05D004976 ORTHO05D004851 8.9e-14 80.9 133 32.3
Sp3g33160 Schrenkiella parvula HOM05D004976 ORTHO05D004851 8.9e-14 80.9 105 30.5
Sp6g05670 Schrenkiella parvula HOM05D004976 ORTHO05D004851 8.9e-14 80.9 131 32.1
BcaC06g30787 Brassica carinata HOM05D000003 ORTHO05D000004 1.5e-13 80.1 105 34.3
AT5G65005 Arabidopsis thaliana HOM05D004976 ORTHO05D004851 2.6e-13 79.3 134 32.1
C02p57240 Brassica napus HOM05D000003 ORTHO05D004851 2.6e-13 79.3 108 34.3
BraA09t39138Z Brassica rapa HOM05D004976 ORTHO05D004851 2.6e-13 79.3 77 42.9
Sp7g13260 Schrenkiella parvula HOM05D000051 ORTHO05D000015 2.6e-13 79.3 72 44.4
BraA08t35107Z Brassica rapa HOM05D004976 ORTHO05D004851 5.8e-13 78.2 57 56.1
Aa31sc480G10 Aethionema arabicum HOM05D000003 ORTHO05D000004 1.3e-12 77.0 107 29.0
AT1G52990 Arabidopsis thaliana HOM05D004976 ORTHO05D004851 1.7e-12 76.6 124 32.3
A06p33810 Brassica napus HOM05D004976 ORTHO05D004851 1.7e-12 76.6 109 32.1
BolC7t43279H Brassica oleracea HOM05D004976 ORTHO05D004851 1.7e-12 76.6 62 51.6
Aa31LG9G1700 Aethionema arabicum HOM05D000003 ORTHO05D000004 3.7e-12 75.5 105 29.5
BcaNung01203 Brassica carinata HOM05D000003 ORTHO05D000004 3.7e-12 75.5 123 32.5
Aa31sc85G20 Aethionema arabicum HOM05D000003 ORTHO05D000004 8.3e-12 74.3 105 32.4
C02p26690 Brassica napus HOM05D004976 ORTHO05D004851 8.3e-12 74.3 61 52.5
Thhalv10002811m.g Eutrema salsugineum HOM05D004976 ORTHO05D004851 8.3e-12 74.3 108 35.2
BcaC05g28671 Brassica carinata HOM05D000003 ORTHO05D004851 1.4e-11 73.6 106 31.1
Aa31LG8G10880 Aethionema arabicum HOM05D000003 ORTHO05D000004 2.4e-11 72.8 105 32.4
Aa31LG9G1250 Aethionema arabicum HOM05D000003 ORTHO05D000004 4.1e-11 72.0 134 29.9
AT2G13980 Arabidopsis thaliana HOM05D004976 ORTHO05D004851 4.1e-11 72.0 110 30.9
AT3G23320 Arabidopsis thaliana HOM05D004976 ORTHO05D004851 4.1e-11 72.0 104 30.8
Aa31sc52G80 Aethionema arabicum HOM05D000003 ORTHO05D000004 5.4e-11 71.6 132 26.5
Aa31LG7G13940 Aethionema arabicum HOM05D000003 ORTHO05D000004 7.1e-11 71.2 105 29.5
Thhalv10009902m.g Eutrema salsugineum HOM05D004976 ORTHO05D004851 1.6e-10 70.1 61 45.9
Aa31LG2G16130 Aethionema arabicum HOM05D000003 ORTHO05D000004 2.1e-10 69.7 132 28.0
Thhalv10002256m.g Eutrema salsugineum HOM05D004976 ORTHO05D004851 3.5e-10 68.9 89 31.5
BcaC07g37820 Brassica carinata HOM05D004976 ORTHO05D004851 4.6e-10 68.6 132 28.8
Sp1g34520 Schrenkiella parvula HOM05D000003 ORTHO05D000004 7.8e-10 67.8 105 28.6
Sp6g05960 Schrenkiella parvula HOM05D004976 ORTHO05D004851 7.8e-10 67.8 108 36.1
BcaB06g27196 Brassica carinata HOM05D000003 ORTHO05D000004 1.0e-09 67.4 138 29.7
BcaB07g31659 Brassica carinata HOM05D000003 ORTHO05D000004 1.3e-09 67.0 138 29.7
CARHR057000 Cardamine hirsuta HOM05D004976 ORTHO05D004851 1.3e-09 67.0 103 33.0
CARHR146840 Cardamine hirsuta HOM05D004976 ORTHO05D004851 1.3e-09 67.0 77 33.8
Sp6g08450 Schrenkiella parvula HOM05D000003 ORTHO05D024751 1.7e-09 66.6 93 33.3
BcaB01g00937 Brassica carinata HOM05D000003 ORTHO05D000004 3.0e-09 65.9 141 27.7
Aa31sc214G50 Aethionema arabicum HOM05D000003 ORTHO05D000004 3.9e-09 65.5 105 29.5
BcaC03g16450 Brassica carinata HOM05D000003 ORTHO05D004851 5.1e-09 65.1 115 29.6
BolC9t55965H Brassica oleracea HOM05D004976 ORTHO05D004851 1.5e-08 63.5 88 33.0
Aa31LG1G5990 Aethionema arabicum HOM05D000003 ORTHO05D000004 1.9e-08 63.2 105 31.4
PSO478G3110 Papaver somniferum HOM05D003407 ORTHO05D001026 1.9e-08 63.2 117 35.0
AL7G45480 Arabidopsis lyrata HOM05D004976 ORTHO05D004851 2.5e-08 62.8 135 27.4
BolC7t41032H Brassica oleracea HOM05D000003 ORTHO05D000004 2.5e-08 62.8 107 31.8
Thhalv10005417m.g Eutrema salsugineum HOM05D004976 ORTHO05D004851 3.3e-08 62.4 92 32.6
AT5G44470 Arabidopsis thaliana HOM05D004976 ORTHO05D004851 4.3e-08 62.0 67 43.3
AT5G52115 Arabidopsis thaliana HOM05D004976 ORTHO05D004851 4.3e-08 62.0 101 31.7
BolC4t22723H Brassica oleracea HOM05D000003 ORTHO05D014433 4.3e-08 62.0 128 33.6
BolC4t22740H Brassica oleracea HOM05D000003 ORTHO05D001498 4.3e-08 62.0 106 34.9
BolC6t37512H Brassica oleracea HOM05D004976 ORTHO05D004851 4.3e-08 62.0 82 29.3
Aa31sc128G60 Aethionema arabicum HOM05D000003 ORTHO05D000004 5.6e-08 61.6 105 33.3
Aa31sc248G50 Aethionema arabicum HOM05D000003 ORTHO05D000004 5.6e-08 61.6 105 33.3
QL12p001149 Quercus lobata HOM05D000003 ORTHO05D000167 5.6e-08 61.6 109 33.9
BcaC07g40765 Brassica carinata HOM05D000003 ORTHO05D000004 7.3e-08 61.2 116 29.3
Atru.chr11.1308 Acer truncatum HOM05D000003 ORTHO05D000022 9.5e-08 60.8 124 30.6
AT3G32130 Arabidopsis thaliana HOM05D004976 ORTHO05D004851 9.5e-08 60.8 48 52.1
BcaC05g28305 Brassica carinata HOM05D000003 ORTHO05D001091 9.5e-08 60.8 106 34.9
Sp4g06100 Schrenkiella parvula HOM05D004976 ORTHO05D004851 1.2e-07 60.5 62 37.1
Aa31sc174G40 Aethionema arabicum HOM05D000003 ORTHO05D001498 1.6e-07 60.1 108 34.3
Sp4g02030 Schrenkiella parvula HOM05D004976 ORTHO05D004851 1.6e-07 60.1 136 29.4
Aa31sc85G50 Aethionema arabicum HOM05D000003 ORTHO05D001091 2.1e-07 59.7 105 30.5
CARHR287060 Cardamine hirsuta HOM05D004976 ORTHO05D004851 2.1e-07 59.7 67 41.8
Lj4g0008388 Lotus japonicus HOM05D000003 ORTHO05D007254 2.1e-07 59.7 120 31.7
MBI17_g12077_MAGBIO Magnolia biondii HOM05D000556 ORTHO05D000404 2.1e-07 59.7 115 33.0
AT2G34320 Arabidopsis thaliana HOM05D000003 ORTHO05D001091 2.8e-07 59.3 105 30.5
EL10Ac2g02847 Beta vulgaris HOM05D000003 ORTHO05D000167 2.8e-07 59.3 133 27.1
Aa31LG7G2740 Aethionema arabicum HOM05D000003 ORTHO05D000004 4.7e-07 58.5 105 30.5
Aa31LG8G11710 Aethionema arabicum HOM05D004976 ORTHO05D004851 4.7e-07 58.5 67 35.8
AL2G19800 Arabidopsis lyrata HOM05D004976 ORTHO05D004851 6.2e-07 58.2 44 52.3
Prupe.2G133200 Prunus persica HOM05D027201 ORTHO05D008897 6.2e-07 58.2 132 26.5
EL10Ac2g04418 Beta vulgaris HOM05D000003 ORTHO05D000004 1.1e-06 57.4 106 26.4
Sp7g06140 Schrenkiella parvula HOM05D004976 ORTHO05D004851 1.1e-06 57.4 136 28.7
Sp7g07570 Schrenkiella parvula HOM05D004976 ORTHO05D004851 1.1e-06 57.4 54 42.6
Aqoxy4G00680 Aquilegia oxysepala HOM05D009330 ORTHO05D001026 1.4e-06 57.0 142 27.5
Ah.07g198050 Amaranthus hybridus HOM05D000003 ORTHO05D008897 1.8e-06 56.6 106 34.0
Aqoxy3G01799 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 1.8e-06 56.6 110 31.8
Aa31LG10G16810 Aethionema arabicum HOM05D000003 ORTHO05D000004 2.4e-06 56.2 144 28.5
Aa31LG8G12700 Aethionema arabicum HOM05D000003 ORTHO05D000004 2.4e-06 56.2 106 34.0
Aa31LG8G4340 Aethionema arabicum HOM05D000003 ORTHO05D001091 2.4e-06 56.2 140 25.0
BcaC04g21052 Brassica carinata HOM05D000003 ORTHO05D000004 2.4e-06 56.2 125 29.6
BolC4t23673H Brassica oleracea HOM05D001239 ORTHO05D000925 2.4e-06 56.2 107 28.0
PSO423G0288 Papaver somniferum HOM05D003407 ORTHO05D001026 2.4e-06 56.2 132 28.8
Psat7g059240 Pisum sativum HOM05D000003 ORTHO05D000022 2.4e-06 56.2 137 27.0
Aa31LG11G11010 Aethionema arabicum HOM05D000003 ORTHO05D000004 3.1e-06 55.8 105 27.6
Aa31sc17G80 Aethionema arabicum HOM05D000003 ORTHO05D000004 3.1e-06 55.8 134 25.4
Aa31sc56G70 Aethionema arabicum HOM05D000003 ORTHO05D000004 3.1e-06 55.8 103 32.0
C04p24190 Brassica napus HOM05D004976 ORTHO05D004851 3.1e-06 55.8 82 32.9
Sp3g24980 Schrenkiella parvula HOM05D000305 ORTHO05D000065 3.1e-06 55.8 106 30.2
Aa31LG7G12310 Aethionema arabicum HOM05D000003 ORTHO05D000004 4.0e-06 55.5 106 30.2
Aqoxy4G01338 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 4.0e-06 55.5 110 30.9
BcaC01g02706 Brassica carinata HOM05D000003 ORTHO05D000004 4.0e-06 55.5 100 32.0
BcaC09g49873 Brassica carinata HOM05D000003 ORTHO05D000004 4.0e-06 55.5 111 27.9
CARHR056860 Cardamine hirsuta HOM05D004976 ORTHO05D004851 4.0e-06 55.5 59 40.7
Atru.chr1.2428 Acer truncatum HOM05D000003 ORTHO05D000004 5.2e-06 55.1 135 30.4
BraA08t33890Z Brassica rapa HOM05D004976 ORTHO05D004851 5.2e-06 55.1 41 53.7
Cc04_g14660 Coffea canephora HOM05D000003 ORTHO05D000167 5.2e-06 55.1 109 28.4
PSO063G1456 Papaver somniferum HOM05D000003 ORTHO05D000004 5.2e-06 55.1 111 29.7
AL7G18580 Arabidopsis lyrata HOM05D004976 ORTHO05D080774 6.8e-06 54.7 41 53.7


User provided reference genes

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