Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G19320 Arabidopsis lyrata HOM05D002263 ORTHO05D003537 2.3e-91 339.0 179 100.0
Carub.0003s2419 Capsella rubella HOM05D002263 ORTHO05D003537 9.3e-53 210.7 185 64.3
AL3G38880 Arabidopsis lyrata HOM05D002263 ORTHO05D003537 1.8e-51 206.5 185 64.9
Sp7g26900 Schrenkiella parvula HOM05D002263 ORTHO05D003537 3.0e-51 205.7 185 61.6
Aa31LG5G18570 Aethionema arabicum HOM05D002263 ORTHO05D003537 6.7e-51 204.5 185 62.7
Thhalv10024219m.g Eutrema salsugineum HOM05D002263 ORTHO05D003537 5.7e-50 201.4 187 61.0
THA.LOC104820131 Tarenaya hassleriana HOM05D002263 ORTHO05D003537 3.7e-49 198.7 186 59.7
BcaC09g51672 Brassica carinata HOM05D002263 ORTHO05D003537 1.4e-48 196.8 186 58.1
C01p10550 Brassica napus HOM05D002263 ORTHO05D003537 1.4e-48 196.8 186 58.1
BolC1t01018H Brassica oleracea HOM05D002263 ORTHO05D003537 1.4e-48 196.8 186 58.1
BcaNung01342 Brassica carinata HOM05D002263 ORTHO05D003537 3.1e-48 195.7 186 58.6
BcaNung00438 Brassica carinata HOM05D002263 ORTHO05D003537 2.6e-47 192.6 187 58.3
CSS0021570 Camellia sinensis var. sinensis HOM05D002263 ORTHO05D003537 5.9e-47 191.4 183 56.8
CSS0033402 Camellia sinensis var. sinensis HOM05D002263 ORTHO05D003537 7.7e-47 191.0 183 56.8
AT3G23890 Arabidopsis thaliana HOM05D002263 ORTHO05D003537 1.0e-46 190.7 186 60.2
Thecc.10G041300 Theobroma cacao HOM05D002263 ORTHO05D003537 2.9e-46 189.1 182 55.5
BraA01t00849Z Brassica rapa HOM05D002263 ORTHO05D003537 3.8e-46 188.7 186 55.9
Dinv43424 Davidia involucrata HOM05D002263 ORTHO05D003537 6.5e-46 188.0 183 56.3
Potri.001G264000 Populus trichocarpa HOM05D002263 ORTHO05D003537 8.5e-46 187.6 176 56.8
TWI73G0071 Tripterygium wilfordii HOM05D002263 ORTHO05D003537 8.5e-46 187.6 181 56.4
A01p09010 Brassica napus HOM05D002263 ORTHO05D003537 2.5e-45 186.0 183 56.8
Cpa.g.sc125.26 Carica papaya HOM05D002263 ORTHO05D003537 2.5e-45 186.0 183 55.7
Potri.009G058900 Populus trichocarpa HOM05D002263 ORTHO05D003537 1.2e-44 183.7 176 55.7
Actinidia19405 Actinidia chinensis HOM05D002263 ORTHO05D003537 3.6e-44 182.2 183 54.1
vmacro14860 Vaccinium macrocarpon HOM05D002263 ORTHO05D003537 3.6e-44 182.2 181 54.1
Rhsim01G0127100 Rhododendron simsii HOM05D002263 ORTHO05D003537 1.4e-43 180.3 184 53.3
TAR623G1165 Trochodendron aralioides HOM05D002263 ORTHO05D003537 1.4e-43 180.3 183 53.0
Hma1.2p1_2160F.1_g315580 Hydrangea macrophylla HOM05D002263 ORTHO05D003537 1.8e-43 179.9 184 53.3
PGR031G1196 Punica granatum HOM05D002263 ORTHO05D003537 1.8e-43 179.9 183 53.0
Cc02_g28170 Coffea canephora HOM05D002263 ORTHO05D003537 2.3e-43 179.5 182 53.3
Nn2g15271 Nelumbo nucifera HOM05D002263 ORTHO05D003537 3.9e-43 178.7 183 52.5
FAN01G0038 Fragaria x ananassa HOM05D002263 ORTHO05D003537 5.1e-43 178.3 181 54.1
FAN03G0380 Fragaria x ananassa HOM05D002263 ORTHO05D003537 5.1e-43 178.3 181 54.1
FAN06G0127 Fragaria x ananassa HOM05D002263 ORTHO05D003537 5.1e-43 178.3 181 54.1
FAN10G1377 Fragaria x ananassa HOM05D002263 ORTHO05D003537 5.1e-43 178.3 181 54.1
MD02G1308000 Malus domestica HOM05D002263 ORTHO05D003537 5.1e-43 178.3 183 51.4
Rhsim01G0128300 Rhododendron simsii HOM05D002263 ORTHO05D003537 6.7e-43 177.9 184 52.7
RcHm_v2.0_Chr1g0317031 Rosa chinensis HOM05D002263 ORTHO05D003537 6.7e-43 177.9 181 53.0
CsaV3_3G032050 Cucumis sativus L. HOM05D002263 ORTHO05D003537 8.8e-43 177.6 181 54.1
FvH4_7g01280 Fragaria vesca HOM05D002263 ORTHO05D003537 8.8e-43 177.6 181 53.6
MD07G1017700 Malus domestica HOM05D002263 ORTHO05D003537 8.8e-43 177.6 183 51.4
Prupe.2G017500 Prunus persica HOM05D002263 ORTHO05D003537 1.1e-42 177.2 183 51.9
Sed0024297 Sechium edule HOM05D002263 ORTHO05D003537 1.5e-42 176.8 180 54.4
MELO3C023986.2 Cucumis melo HOM05D002263 ORTHO05D003537 2.0e-42 176.4 181 54.1
Atru.chr11.2587 Acer truncatum HOM05D002263 ORTHO05D003537 2.5e-42 176.0 183 51.9
CANSAT80G1724 Cannabis sativa HOM05D002263 ORTHO05D003537 3.3e-42 175.6 182 52.2
Eucgr.H02748 Eucalyptus grandis HOM05D002263 ORTHO05D003537 3.3e-42 175.6 182 52.7
CiPaw.05G149100 Carya illinoinensis HOM05D002263 ORTHO05D003537 7.4e-42 174.5 179 53.6
Sed0008745 Sechium edule HOM05D002263 ORTHO05D003537 7.4e-42 174.5 180 52.2
ClCG10G012270 Citrullus lanatus HOM05D002263 ORTHO05D003537 9.7e-42 174.1 181 53.6
Migut.B01281 Erythranthe guttata HOM05D002263 ORTHO05D003537 1.3e-41 173.7 183 52.5
CARHR061100 Cardamine hirsuta HOM05D002263 ORTHO05D003537 2.2e-41 172.9 185 54.1
Ciclev10030505m.g Citrus clementina HOM05D002263 ORTHO05D003537 2.2e-41 172.9 181 53.0
Haze_03174 Corylus avellana HOM05D002263 ORTHO05D003537 6.3e-41 171.4 180 52.2
Nn7g36257 Nelumbo nucifera HOM05D002263 ORTHO05D003537 6.3e-41 171.4 185 51.4
ATR0332G038 Amborella trichopoda HOM05D002263 ORTHO05D003537 8.2e-41 171.0 180 51.7
CiPaw.14G001600 Carya illinoinensis HOM05D002263 ORTHO05D003537 1.4e-40 170.2 179 52.5
CDE10G0015 Ceratophyllum demersum HOM05D002263 ORTHO05D003537 1.4e-40 170.2 172 53.5
Eucgr.H02633 Eucalyptus grandis HOM05D002263 ORTHO05D003537 1.8e-40 169.9 181 51.9
QL04p008074 Quercus lobata HOM05D002263 ORTHO05D003537 9.1e-40 167.5 183 50.8
QL04p008574 Quercus lobata HOM05D002263 ORTHO05D003537 9.1e-40 167.5 183 50.8
PGSC0003DMG400006793 Solanum tuberosum HOM05D002263 ORTHO05D003537 1.2e-39 167.2 181 50.8
MSTRG.20571 Avicennia marina HOM05D002263 ORTHO05D003537 1.5e-39 166.8 183 52.5
Aqoxy2G00154 Aquilegia oxysepala HOM05D002263 ORTHO05D003537 2.6e-39 166.0 174 53.4
Solyc01g087500.3 Solanum lycopersicum HOM05D002263 ORTHO05D003537 2.6e-39 166.0 181 50.8
Cfa010797 Carpinus fangiana HOM05D002263 ORTHO05D003537 3.4e-39 165.6 180 50.6
Prupe.2G018500 Prunus persica HOM05D002263 ORTHO05D003537 4.5e-39 165.2 168 53.6
Gohir.A10G219600 Gossypium hirsutum HOM05D002263 ORTHO05D003537 5.9e-39 164.9 177 50.8
Gohir.D10G229100 Gossypium hirsutum HOM05D002263 ORTHO05D003537 5.9e-39 164.9 177 50.8
Gorai.011G261600 Gossypium raimondii HOM05D002263 ORTHO05D003537 5.9e-39 164.9 177 50.8
Sopen01g034420 Solanum pennellii HOM05D002263 ORTHO05D003537 5.9e-39 164.9 181 50.3
Duzib106G1002 Durio zibethinus HOM05D002263 ORTHO05D003537 7.7e-39 164.5 208 45.7
SGA_v2.0_scaffold119G32746 Striga asiatica HOM05D002263 ORTHO05D003537 7.7e-39 164.5 186 51.1
Manes.10G140100 Manihot esculenta HOM05D002263 ORTHO05D003537 1.7e-38 163.3 181 51.4
CAN.G219.44 Capsicum annuum HOM05D002263 ORTHO05D003537 2.9e-38 162.5 181 49.2
Lj3g0016100 Lotus japonicus HOM05D002263 ORTHO05D003537 3.8e-38 162.2 180 51.1
RcHm_v2.0_Chr1g0375001 Rosa chinensis HOM05D002263 ORTHO05D003537 3.8e-38 162.2 177 50.8
QL04p008589 Quercus lobata HOM05D002263 ORTHO05D003537 8.5e-38 161.0 178 50.6
QL04p008683 Quercus lobata HOM05D002263 ORTHO05D003537 4.2e-37 158.7 183 48.6
unitig_22.g5326 Utricularia gibba HOM05D002263 ORTHO05D003537 5.5e-37 158.3 172 50.6
TAR369G0754 Trochodendron aralioides HOM05D002263 ORTHO05D003537 7.2e-37 157.9 183 48.1
arahy.Tifrunner.gnm1.ann1.NCP65V Arachis hypogaea HOM05D002263 ORTHO05D003537 9.4e-37 157.5 180 49.4
Lj2C383G13 Lonicera japonica HOM05D002263 ORTHO05D003537 1.6e-36 156.8 166 51.8
Sc16g0001930 Simmondsia chinensis HOM05D002263 ORTHO05D003537 1.6e-36 156.8 190 44.2
arahy.Tifrunner.gnm1.ann1.VJ5EI6 Arachis hypogaea HOM05D002263 ORTHO05D003537 2.1e-36 156.4 180 48.9
Pp3c19_3610 Physcomitrium patens HOM05D002263 ORTHO05D003537 4.7e-36 155.2 180 48.3
AagrBONN_evm.TU.Sc2ySwM_344.3755 Anthoceros agrestis HOM05D002263 ORTHO05D003537 1.8e-35 153.3 181 46.4
SMO147G0130 Selaginella moellendorffii HOM05D002263 ORTHO05D003537 1.8e-35 153.3 180 47.8
SMO330G0020 Selaginella moellendorffii HOM05D002263 ORTHO05D003537 1.8e-35 153.3 180 47.8
GSVIVG01032138001 Vitis vinifera HOM05D002263 ORTHO05D003537 1.8e-35 153.3 169 51.5
COL.COLO4_15049 Corchorus olitorius HOM05D002263 ORTHO05D003537 2.3e-35 152.9 181 47.5
Sed0023112 Sechium edule HOM05D002263 ORTHO05D003537 8.8e-35 151.0 173 49.7
EL10Ac2g04344 Beta vulgaris HOM05D002263 ORTHO05D003537 1.5e-34 150.2 183 45.9
Nitab4.5_0002918g0080 Nicotiana tabacum HOM05D002263 ORTHO05D003537 1.5e-34 150.2 178 48.9
Medtr3g031040 Medicago truncatula HOM05D002263 ORTHO05D003537 5.7e-34 148.3 184 46.7
Hund15422 Selenicereus undatus HOM05D002263 ORTHO05D003537 7.4e-34 147.9 185 47.6
Ca_14467_v3 Cicer arietinum L. HOM05D002263 ORTHO05D003537 9.7e-34 147.5 180 47.8
Psat7g085320 Pisum sativum HOM05D002263 ORTHO05D003537 9.7e-34 147.5 177 49.2
arahy.Tifrunner.gnm1.ann1.ES5MTE Arachis hypogaea HOM05D002263 ORTHO05D003537 1.3e-33 147.1 175 48.6
Nitab4.5_0000707g0240 Nicotiana tabacum HOM05D002263 ORTHO05D003537 1.3e-33 147.1 178 48.3
Zm00001eb251620 Zea mays HOM05D002263 ORTHO05D003537 1.7e-33 146.7 166 50.6
VMungo1080G1747 Vigna mungo HOM05D002263 ORTHO05D003537 2.2e-33 146.4 179 48.0
Zm00001eb188030 Zea mays HOM05D002263 ORTHO05D003537 2.2e-33 146.4 177 49.2
Phvul.005G024200 Phaseolus vulgaris HOM05D002263 ORTHO05D003537 2.8e-33 146.0 180 47.2
TPR.G27843 Trifolium pratense HOM05D002263 ORTHO05D003537 3.7e-33 145.6 179 46.9
Lalb_Chr19g0140281 Lupinus albus HOM05D002263 ORTHO05D003537 4.8e-33 145.2 180 47.2
Psat0s825g0040 Pisum sativum HOM05D002263 ORTHO05D003537 4.8e-33 145.2 180 47.2
AUR62023080 Chenopodium quinoa HOM05D002263 ORTHO05D003537 8.2e-33 144.4 181 43.1
Glyma.10G090000 Glycine max HOM05D002263 ORTHO05D003537 1.1e-32 144.1 178 47.2
ECA248G0809 Erigeron canadensis HOM05D002263 ORTHO05D003537 1.4e-32 143.7 194 43.8
Oeu049493.1 Olea europaea HOM05D002263 ORTHO05D003537 1.4e-32 143.7 169 45.6
Glyma.15G276000 Glycine max HOM05D002263 ORTHO05D003537 3.1e-32 142.5 180 47.2
HanXRQChr01g0016471 Helianthus annuus HOM05D002263 ORTHO05D003537 5.3e-32 141.7 197 43.1
PSO832G4242 Papaver somniferum HOM05D002263 ORTHO05D003537 9.1e-32 141.0 185 42.2
TPR.G22438 Trifolium pratense HOM05D002263 ORTHO05D003537 1.5e-31 140.2 178 47.8
Peaxi162Scf00744g00349 Petunia axillaris HOM05D002263 ORTHO05D003537 2.0e-31 139.8 181 44.2
SalBow5G1665 Salvia bowleyana HOM05D002263 ORTHO05D003537 4.5e-31 138.7 203 42.9
Mapoly0050s0134 Marchantia polymorpha HOM05D002263 ORTHO05D003537 5.9e-31 138.3 183 45.4
HanXRQChr14g0447821 Helianthus annuus HOM05D002263 ORTHO05D003537 1.0e-30 137.5 199 42.7
Lj9C634T13 Lonicera japonica HOM05D002263 ORTHO05D003537 1.3e-30 137.1 182 45.6
AUR62009398 Chenopodium quinoa HOM05D002263 ORTHO05D003537 2.2e-30 136.3 181 42.0
Ah.10g038760 Amaranthus hybridus HOM05D002263 ORTHO05D003537 5.0e-30 135.2 179 44.1
Medtr3g085840 Medicago truncatula HOM05D002263 ORTHO05D003537 5.0e-30 135.2 172 48.8
arahy.Tifrunner.gnm1.ann1.CKFG51 Arachis hypogaea HOM05D002263 ORTHO05D003537 3.2e-29 132.5 204 41.2
SGA_v2.0_scaffold105G30414 Striga asiatica HOM05D002263 ORTHO05D003537 2.1e-28 129.8 166 41.0
SEGI_34540 Sequoiadendron giganteum HOM05D002263 ORTHO05D003537 1.4e-27 127.1 180 41.1
Ah.06g183060 Amaranthus hybridus HOM05D002263 ORTHO05D003537 6.7e-27 124.8 176 42.6
CBR_g55332 Chara braunii HOM05D002263 ORTHO05D003537 7.4e-26 121.3 183 41.0
DCAR_022381 Daucus carota HOM05D002263 ORTHO05D003537 2.2e-25 119.8 183 40.4
Pp3c18_20260 Physcomitrium patens HOM05D002263 ORTHO05D003537 1.4e-24 117.1 180 39.4
Pp3c18_20261 Physcomitrium patens HOM05D002263 ORTHO05D003537 1.4e-24 117.1 180 39.4
PSO063G6561 Papaver somniferum HOM05D002263 ORTHO05D003537 4.1e-24 115.5 185 40.0
HPP92_014707 Vanilla planifolia HOM05D002263 ORTHO05D003537 2.9e-22 109.4 152 45.4
Medtr1g075370 Medicago truncatula HOM05D002263 ORTHO05D003537 5.0e-22 108.6 180 40.0
QL02p043717 Quercus lobata HOM05D002263 ORTHO05D012916 5.0e-22 108.6 143 44.8
PRCOL_00004802 Prasinoderma coloniale HOM05D002263 ORTHO05D003537 8.5e-22 107.8 178 38.2
Lsat_1_v5_gn_1_105720 Lactuca sativa HOM05D002263 ORTHO05D003537 1.1e-21 107.5 189 38.1
Cre01.g009250 Chlamydomonas reinhardtii HOM05D002263 ORTHO05D003537 1.9e-21 106.7 175 37.1
MCO05G739 Micromonas commoda HOM05D002263 ORTHO05D003537 3.0e-19 99.4 167 35.9
MBI05_g27107_MAGBIO Magnolia biondii HOM05D002263 ORTHO05D003537 2.0e-18 96.7 126 45.2
Sabra09G0043300 Salix brachista HOM05D002263 ORTHO05D003537 3.4e-18 95.9 119 44.5
RcHm_v2.0_Chr1g0380651 Rosa chinensis HOM05D002263 ORTHO05D003537 1.3e-17 94.0 93 53.8
Sabra09G0043200 Salix brachista HOM05D002263 ORTHO05D003537 4.1e-16 89.0 58 75.9
Lsat_1_v5_gn_8_147141 Lactuca sativa HOM05D004146 ORTHO05D004843 1.6e-15 87.0 55 76.4
Medtr1g051315 Medicago truncatula HOM05D002263 ORTHO05D003537 2.7e-15 86.3 174 37.4
QL08p037214 Quercus lobata HOM05D002263 ORTHO05D005465 4.5e-15 85.5 131 39.7
QL93p0107_0380 Quercus lobata HOM05D000370 ORTHO05D001335 4.5e-15 85.5 131 39.7
QL08p021041 Quercus lobata HOM05D002263 ORTHO05D012916 5.9e-15 85.1 131 39.7
Nn1g07152 Nelumbo nucifera HOM05D002263 ORTHO05D003537 1.3e-14 84.0 63 71.4
QL08p003465 Quercus lobata HOM05D002263 ORTHO05D012916 1.3e-14 84.0 131 38.9
QL12p004084 Quercus lobata HOM05D000176 ORTHO05D000106 1.3e-14 84.0 131 38.9
FAN25G0983 Fragaria x ananassa HOM05D002263 ORTHO05D003537 2.2e-14 83.2 96 49.0
QL02p053676 Quercus lobata HOM05D002263 ORTHO05D003537 2.2e-14 83.2 117 41.0
AL3G19410 Arabidopsis lyrata HOM05D002263 ORTHO05D003537 8.5e-14 81.3 87 52.9
RhsimUnG0044300 Rhododendron simsii HOM05D002263 ORTHO05D003537 8.5e-14 81.3 112 43.8
Medtr0756s0010 Medicago truncatula HOM05D002263 ORTHO05D003537 2.5e-13 79.7 167 37.1
unitig_8.g3777 Utricularia gibba HOM05D002263 ORTHO05D003537 8.0e-12 74.7 116 40.5
BcaB01g05526 Brassica carinata HOM05D002263 ORTHO05D003537 1.4e-11 73.9 89 41.6
C03p05180 Brassica napus HOM05D002263 ORTHO05D003537 1.8e-11 73.6 89 41.6
BolC3t13035H Brassica oleracea HOM05D002263 ORTHO05D003537 1.8e-11 73.6 89 41.6
AL7G27330 Arabidopsis lyrata HOM05D002263 ORTHO05D003537 4.0e-11 72.4 158 34.8
BolC5t34561H Brassica oleracea HOM05D002263 ORTHO05D003537 5.2e-11 72.0 136 36.8
QL05p087728 Quercus lobata HOM05D000176 ORTHO05D000106 4.9e-09 65.5 99 39.4
TPR.G17543 Trifolium pratense HOM05D002263 ORTHO05D003537 2.4e-08 63.2 76 39.5
SHI26140 Sapria himalayana HOM05D002263 ORTHO05D003537 4.1e-08 62.4 102 37.3
MBI02_g23141_MAGBIO Magnolia biondii HOM05D002263 ORTHO05D003537 1.2e-07 60.8 41 65.9
AL8G27570 Arabidopsis lyrata HOM05D002263 ORTHO05D003537 2.7e-07 59.7 127 40.2
Hma1.2p1_1755F.1_g300980 Hydrangea macrophylla HOM05D002263 ORTHO05D013693 1.0e-06 57.8 85 41.2
Lj1g0019754 Lotus japonicus HOM05D002263 ORTHO05D003537 2.3e-06 56.6 159 30.2


User provided reference genes

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