Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G29500 Arabidopsis lyrata HOM05D006873 ORTHO05D008668 5.9e-268 927.2 538 100.0
AT1G70200 Arabidopsis thaliana HOM05D006873 ORTHO05D008668 1.3e-222 776.5 540 84.8
Carub.0002s1690 Capsella rubella HOM05D006873 ORTHO05D008668 2.8e-193 679.1 552 75.9
CARHR063320 Cardamine hirsuta HOM05D006873 ORTHO05D008668 1.3e-171 607.1 557 71.1
Thhalv10018395m.g Eutrema salsugineum HOM05D006873 ORTHO05D008668 8.2e-161 571.2 557 67.5
Sp5g25330 Schrenkiella parvula HOM05D006873 ORTHO05D008668 1.2e-159 567.4 557 66.6
A07p31180 Brassica napus HOM05D006873 ORTHO05D008668 2.6e-143 513.1 544 64.2
BraA07t30751Z Brassica rapa HOM05D006873 ORTHO05D008668 1.3e-142 510.8 544 64.0
BcaB03g15534 Brassica carinata HOM05D006873 ORTHO05D008668 7.4e-138 495.0 542 62.5
C06p36230 Brassica napus HOM05D006873 ORTHO05D008668 2.0e-130 470.3 545 58.7
BolC6t38744H Brassica oleracea HOM05D006873 ORTHO05D008668 1.3e-129 467.6 548 59.1
BcaC08g45836 Brassica carinata HOM05D006873 ORTHO05D008668 1.1e-128 464.5 550 58.7
Aa31LG4G10700 Aethionema arabicum HOM05D006873 ORTHO05D008668 7.2e-125 451.8 568 54.6
THA.LOC104823082 Tarenaya hassleriana HOM05D006873 ORTHO05D008668 2.2e-97 360.5 557 45.6
MD16G1087500 Malus domestica HOM05D006873 ORTHO05D008668 1.7e-57 228.0 429 39.9
Manes.05G090700 Manihot esculenta HOM05D006873 ORTHO05D008668 1.2e-55 221.9 518 37.5
Cpa.g.sc5.353 Carica papaya HOM05D006873 ORTHO05D008668 3.5e-55 220.3 542 36.0
Atru.chr11.1966 Acer truncatum HOM05D006873 ORTHO05D008668 1.5e-53 214.9 435 36.6
Potri.008G146700 Populus trichocarpa HOM05D006873 ORTHO05D008668 1.9e-53 214.5 445 37.3
Gorai.004G149100 Gossypium raimondii HOM05D006873 ORTHO05D008668 4.8e-52 209.9 223 52.9
Duzib248G0774 Durio zibethinus HOM05D006873 ORTHO05D008668 6.3e-52 209.5 425 39.1
Gohir.D08G144400 Gossypium hirsutum HOM05D006873 ORTHO05D008668 8.2e-52 209.1 223 52.9
Gohir.A08G123000 Gossypium hirsutum HOM05D006873 ORTHO05D008668 1.4e-51 208.4 428 37.6
Thecc.02G242900 Theobroma cacao HOM05D006873 ORTHO05D008668 1.8e-51 208.0 427 37.9
Cfa009104 Carpinus fangiana HOM05D006873 ORTHO05D008668 5.3e-51 206.5 255 48.6
Sabra08G0111700 Salix brachista HOM05D006873 ORTHO05D008668 6.9e-51 206.1 250 51.6
Haze_12141 Corylus avellana HOM05D006873 ORTHO05D008668 9.0e-51 205.7 236 49.6
PGR119G2095 Punica granatum HOM05D006873 ORTHO05D008668 4.5e-50 203.4 441 37.2
CANSAT01G2194 Cannabis sativa HOM05D006873 ORTHO05D008668 7.6e-50 202.6 357 41.5
CSS0006883 Camellia sinensis var. sinensis HOM05D006873 ORTHO05D008668 1.0e-49 202.2 427 36.1
MSTRG.7876 Avicennia marina HOM05D006873 ORTHO05D008668 1.3e-49 201.8 418 34.7
Lj2g0015184 Lotus japonicus HOM05D006873 ORTHO05D008668 2.9e-49 200.7 427 36.5
CSS0023446 Camellia sinensis var. sinensis HOM05D006873 ORTHO05D008668 5.0e-49 199.9 430 36.0
arahy.Tifrunner.gnm1.ann1.MXA56B Arachis hypogaea HOM05D006873 ORTHO05D008668 8.4e-49 199.1 431 37.6
SalBow2G2439 Salvia bowleyana HOM05D006873 ORTHO05D008668 8.4e-49 199.1 283 43.8
PGSC0003DMG400015575 Solanum tuberosum HOM05D006873 ORTHO05D008668 8.4e-49 199.1 423 34.0
Migut.L01442 Erythranthe guttata HOM05D006873 ORTHO05D008668 1.1e-48 198.7 216 48.6
CiPaw.06G074700 Carya illinoinensis HOM05D006873 ORTHO05D008668 1.4e-48 198.4 428 36.2
Prupe.1G259500 Prunus persica HOM05D006873 ORTHO05D008668 1.4e-48 198.4 321 42.1
arahy.Tifrunner.gnm1.ann1.RPT3RX Arachis hypogaea HOM05D006873 ORTHO05D009096 2.5e-48 197.6 448 38.6
COL.COLO4_37899 Corchorus olitorius HOM05D006873 ORTHO05D008668 5.5e-48 196.4 462 36.1
FAN07G2203 Fragaria x ananassa HOM05D006873 ORTHO05D008668 5.5e-48 196.4 564 34.4
Lalb_Chr05g0217211 Lupinus albus HOM05D006873 ORTHO05D008668 9.3e-48 195.7 429 35.2
Cc11_g14280 Coffea canephora HOM05D006873 ORTHO05D008668 1.2e-47 195.3 421 35.9
arahy.Tifrunner.gnm1.ann1.8WMT1Z Arachis hypogaea HOM05D006873 ORTHO05D008668 1.6e-47 194.9 451 38.4
TPR.G13500 Trifolium pratense HOM05D006873 ORTHO05D008668 1.6e-47 194.9 259 46.7
GSVIVG01020168001 Vitis vinifera HOM05D006873 ORTHO05D008668 1.6e-47 194.9 256 45.7
Ciclev10031560m.g Citrus clementina HOM05D006873 ORTHO05D008668 2.1e-47 194.5 419 36.8
Nn3g16974 Nelumbo nucifera HOM05D006873 ORTHO05D008668 4.6e-47 193.4 542 32.1
Solyc05g006070.4 Solanum lycopersicum HOM05D006873 ORTHO05D008668 6.1e-47 193.0 423 35.2
TWI18G0196 Tripterygium wilfordii HOM05D006873 ORTHO05D008668 6.1e-47 193.0 460 35.4
Glyma.02G030100 Glycine max HOM05D006873 ORTHO05D008668 7.9e-47 192.6 432 34.5
Aqoxy3G03077 Aquilegia oxysepala HOM05D006873 ORTHO05D008668 1.0e-46 192.2 432 35.4
PSO832G2329 Papaver somniferum HOM05D006873 ORTHO05D008668 1.3e-46 191.8 426 32.9
Phvul.002G074900 Phaseolus vulgaris HOM05D006873 ORTHO05D008668 3.9e-46 190.3 513 32.4
PSO063G4822 Papaver somniferum HOM05D006873 ORTHO05D008668 5.1e-46 189.9 510 30.8
Nitab4.5_0000257g0240 Nicotiana tabacum HOM05D006873 ORTHO05D008668 6.7e-46 189.5 426 34.0
SalBow2G2215 Salvia bowleyana HOM05D006873 ORTHO05D008668 6.7e-46 189.5 496 33.7
Actinidia15007 Actinidia chinensis HOM05D006873 ORTHO05D008668 8.7e-46 189.1 427 34.0
Nitab4.5_0009368g0020 Nicotiana tabacum HOM05D006873 ORTHO05D008668 8.7e-46 189.1 420 35.2
Glyma.01G035700 Glycine max HOM05D006873 ORTHO05D008668 1.5e-45 188.3 432 35.0
RcHm_v2.0_Chr4g0444501 Rosa chinensis HOM05D006873 ORTHO05D008668 1.5e-45 188.3 554 34.7
arahy.Tifrunner.gnm1.ann1.N2BTYN Arachis hypogaea HOM05D006873 ORTHO05D008668 3.3e-45 187.2 446 38.3
Ca_04627_v3 Cicer arietinum L. HOM05D006873 ORTHO05D008668 3.3e-45 187.2 210 49.0
Sopen05g002090 Solanum pennellii HOM05D006873 ORTHO05D008668 3.3e-45 187.2 488 36.3
QL03p062447 Quercus lobata HOM05D006873 ORTHO05D008668 9.7e-45 185.7 264 43.9
FAN17G1454 Fragaria x ananassa HOM05D006873 ORTHO05D008668 1.6e-44 184.9 564 35.5
VMungo1215G0960 Vigna mungo HOM05D006873 ORTHO05D008668 1.6e-44 184.9 519 34.1
AUR62020959 Chenopodium quinoa HOM05D006873 ORTHO05D008668 2.8e-44 184.1 423 35.7
Peaxi162Scf00421g00062 Petunia axillaris HOM05D006873 ORTHO05D008668 3.7e-44 183.7 308 40.6
Medtr5g035330 Medicago truncatula HOM05D006873 ORTHO05D008668 4.8e-44 183.3 253 43.5
SGA_v2.0_scaffold166G38344 Striga asiatica HOM05D006873 ORTHO05D008668 8.2e-44 182.6 428 33.4
FvH4_4g34980 Fragaria vesca HOM05D006873 ORTHO05D008668 1.4e-43 181.8 463 34.1
DCAR_026551 Daucus carota HOM05D006873 ORTHO05D008668 3.1e-43 180.6 422 33.2
Eucgr.B02558 Eucalyptus grandis HOM05D006873 ORTHO05D008668 3.1e-43 180.6 430 34.4
EL10Ac6g13256 Beta vulgaris HOM05D006873 ORTHO05D008668 1.2e-42 178.7 163 54.0
vmacro16278 Vaccinium macrocarpon HOM05D006873 ORTHO05D008668 1.5e-42 178.3 454 32.6
unitig_26.g10334 Utricularia gibba HOM05D006873 ORTHO05D008668 2.0e-42 177.9 249 42.6
Sed0022830 Sechium edule HOM05D006873 ORTHO05D008668 2.6e-42 177.6 447 35.1
Lsat_1_v5_gn_8_160241 Lactuca sativa HOM05D006873 ORTHO05D008668 3.4e-42 177.2 243 42.4
FAN22G1812 Fragaria x ananassa HOM05D006873 ORTHO05D008668 7.7e-42 176.0 577 33.4
ClCG09G020710 Citrullus lanatus HOM05D006873 ORTHO05D008668 1.0e-41 175.6 423 33.6
MELO3C002912.2 Cucumis melo HOM05D006873 ORTHO05D008668 1.7e-41 174.9 428 34.6
Sc11g0001350 Simmondsia chinensis HOM05D006873 ORTHO05D008668 6.5e-41 172.9 254 41.7
Hund25317 Selenicereus undatus HOM05D006873 ORTHO05D008668 3.6e-39 167.2 436 32.3
ATR1149G030 Amborella trichopoda HOM05D006873 ORTHO05D008668 1.0e-38 165.6 219 44.3
Rhsim12G0124200 Rhododendron simsii HOM05D006873 ORTHO05D008668 6.7e-38 162.9 455 32.1
ECA234G0329 Erigeron canadensis HOM05D000967 ORTHO05D000796 2.5e-37 161.0 417 32.6
HanXRQChr08g0209031 Helianthus annuus HOM05D006873 ORTHO05D008668 2.5e-37 161.0 420 31.7
CDE07G1306 Ceratophyllum demersum HOM05D005206 ORTHO05D006219 4.3e-37 160.2 473 32.8
TAR622G0254 Trochodendron aralioides HOM05D006873 ORTHO05D008668 5.7e-37 159.8 431 31.3
Psat2g111440 Pisum sativum HOM05D006873 ORTHO05D008668 1.3e-36 158.7 144 55.6
Ah.04g149970 Amaranthus hybridus HOM05D006873 ORTHO05D008668 1.8e-35 154.8 202 42.1
HPP92_005898 Vanilla planifolia HOM05D006873 ORTHO05D008668 8.5e-33 146.0 162 45.1
AagrBONN_evm.TU.Sc2ySwM_362.2365 Anthoceros agrestis HOM05D006873 ORTHO05D008668 4.7e-31 140.2 282 36.5
Dinv31000 Davidia involucrata HOM05D006873 ORTHO05D008668 6.3e-28 129.8 420 29.8
Dinv31103 Davidia involucrata HOM05D006873 ORTHO05D008668 6.3e-28 129.8 420 29.8
CDE04G1917 Ceratophyllum demersum HOM05D000231 ORTHO05D008668 4.1e-27 127.1 144 48.6
Mapoly0001s0497 Marchantia polymorpha HOM05D006873 ORTHO05D008668 5.3e-27 126.7 260 32.3
Os02g0326200 Oryza sativa ssp. japonica HOM05D006873 ORTHO05D008668 7.0e-27 126.3 155 45.8
Oeu001659.1 Olea europaea HOM05D006873 ORTHO05D008668 1.2e-26 125.6 203 38.9
Zm00001eb234150 Zea mays HOM05D006873 ORTHO05D008668 1.2e-26 125.6 195 40.5
CBR_g81555 Chara braunii HOM05D006873 ORTHO05D000353 1.6e-26 125.2 287 33.4
SEGI_33585 Sequoiadendron giganteum HOM05D006873 ORTHO05D008668 2.0e-26 124.8 466 27.9
MBI15_g12637_MAGBIO Magnolia biondii HOM05D006873 ORTHO05D008668 7.2e-24 116.3 356 30.3
CsaV3_5G025700 Cucumis sativus L. HOM05D006873 ORTHO05D008668 4.7e-23 113.6 350 31.1
SMO146G0062 Selaginella moellendorffii HOM05D006873 ORTHO05D008668 1.3e-20 105.5 245 31.0
Duzib251G0321 Durio zibethinus HOM05D006873 ORTHO05D008668 1.4e-19 102.1 133 46.6
AUR62018459 Chenopodium quinoa HOM05D000676 ORTHO05D001458 1.6e-18 98.6 76 60.5
Pp3c1_41900 Physcomitrium patens HOM05D006873 ORTHO05D008668 1.5e-16 92.0 443 25.1
Oeu001660.1 Olea europaea HOM05D006873 ORTHO05D008668 1.2e-13 82.4 63 60.3
Ah.13g077500 Amaranthus hybridus HOM05D006873 ORTHO05D008668 3.7e-12 77.4 52 67.3
CsaV3_5G025680 Cucumis sativus L. HOM05D006873 ORTHO05D008668 3.2e-08 64.3 70 48.6
CsaV3_5G025690 Cucumis sativus L. HOM05D006873 ORTHO05D008668 5.5e-08 63.5 51 58.8


User provided reference genes

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