Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G21550 Arabidopsis lyrata HOM05D000806 ORTHO05D007429 5.1e-63 244.2 119 100.0
ATCG00520 Arabidopsis thaliana HOM05D000806 ORTHO05D007429 7.3e-62 240.4 119 99.2
CARHR282100 Cardamine hirsuta HOM05D000806 ORTHO05D007429 2.1e-61 238.8 119 98.3
A06p23190 Brassica napus HOM05D000806 ORTHO05D007429 3.6e-61 238.0 119 98.3
C09p29600 Brassica napus HOM05D000806 ORTHO05D007429 3.6e-61 238.0 119 98.3
C09p40230 Brassica napus HOM05D000806 ORTHO05D007429 3.6e-61 238.0 119 98.3
BraSC140t45575Z Brassica rapa HOM05D000806 ORTHO05D007429 3.6e-61 238.0 119 98.3
BraSC25t45866Z Brassica rapa HOM05D000806 ORTHO05D007429 3.6e-61 238.0 119 98.3
BraSC59t46591Z Brassica rapa HOM05D000806 ORTHO05D007429 3.6e-61 238.0 119 98.3
BraSC103t45466Z Brassica rapa HOM05D000806 ORTHO05D007429 8.1e-61 236.9 119 97.5
AL2G20666 Arabidopsis lyrata HOM05D000806 ORTHO05D007429 1.1e-60 236.5 117 99.1
BolC9t56915H Brassica oleracea HOM05D000806 ORTHO05D007429 1.4e-60 236.1 119 97.5
BolSC35t60646H Brassica oleracea HOM05D000806 ORTHO05D007429 2.4e-60 235.3 119 97.5
BolSC35t60750H Brassica oleracea HOM05D000806 ORTHO05D007429 2.4e-60 235.3 119 97.5
BolSC46t61035H Brassica oleracea HOM05D000806 ORTHO05D007429 2.4e-60 235.3 119 97.5
BolSC47t61097H Brassica oleracea HOM05D000806 ORTHO05D007429 2.4e-60 235.3 119 97.5
BolSC49t61183H Brassica oleracea HOM05D000806 ORTHO05D007429 2.4e-60 235.3 119 97.5
Thhalv10010960m.g Eutrema salsugineum HOM05D000806 ORTHO05D007429 2.2e-58 228.8 119 94.1
BolSC29t60467H Brassica oleracea HOM05D000806 ORTHO05D007429 4.6e-56 221.1 119 91.6
Gohir.A07G163672 Gossypium hirsutum HOM05D000806 ORTHO05D007429 1.1e-54 216.5 119 89.1
Gohir.A07G163690 Gossypium hirsutum HOM05D000806 ORTHO05D007429 1.9e-54 215.7 119 89.1
MELO3C027107.2 Cucumis melo HOM05D000806 ORTHO05D007429 3.3e-54 214.9 119 89.1
Sed0015006 Sechium edule HOM05D000806 ORTHO05D007429 3.3e-54 214.9 119 89.1
Eucgr.E02608 Eucalyptus grandis HOM05D000806 ORTHO05D007429 7.3e-54 213.8 119 88.2
Hma1.2p1_0035F.1_g021940 Hydrangea macrophylla HOM05D000806 ORTHO05D007429 7.3e-54 213.8 119 88.2
Nn010s41435 Nelumbo nucifera HOM05D000806 ORTHO05D007429 1.3e-53 213.0 119 88.2
Nn265s45955 Nelumbo nucifera HOM05D000806 ORTHO05D007429 1.3e-53 213.0 119 88.2
Duzib198G0003 Durio zibethinus HOM05D000806 ORTHO05D002324 1.6e-53 212.6 117 88.9
PGR111G0079 Punica granatum HOM05D000806 ORTHO05D007429 2.8e-53 211.8 119 87.4
Potri.013G162400 Populus trichocarpa HOM05D000806 ORTHO05D007429 3.6e-53 211.5 119 88.2
QL93p1043_0001 Quercus lobata HOM05D000806 ORTHO05D007429 4.8e-53 211.1 119 86.6
HanXRQChr01g0020361 Helianthus annuus HOM05D000806 ORTHO05D007429 1.4e-52 209.5 119 84.9
HanXRQChr02g0041571 Helianthus annuus HOM05D000806 ORTHO05D007429 1.4e-52 209.5 119 84.9
HanXRQChr10g0283551 Helianthus annuus HOM05D000806 ORTHO05D007429 1.4e-52 209.5 119 84.9
HanXRQChr10g0284241 Helianthus annuus HOM05D000806 ORTHO05D007429 1.4e-52 209.5 119 84.9
HanXRQChr10g0289261 Helianthus annuus HOM05D000806 ORTHO05D007429 1.4e-52 209.5 119 84.9
HanXRQChr10g0318201 Helianthus annuus HOM05D000806 ORTHO05D007429 1.4e-52 209.5 119 84.9
HanXRQChr11g0326821 Helianthus annuus HOM05D000806 ORTHO05D007429 1.4e-52 209.5 119 84.9
HanXRQChr13g0404911 Helianthus annuus HOM05D000806 ORTHO05D007429 1.4e-52 209.5 119 84.9
HanXRQCPg0580031 Helianthus annuus HOM05D000806 ORTHO05D007429 1.4e-52 209.5 119 84.9
RcHm_v2.0_CPg0502091 Rosa chinensis HOM05D000806 ORTHO05D007429 1.4e-52 209.5 119 88.2
DCAR_032495 Daucus carota HOM05D000806 ORTHO05D007429 1.8e-52 209.1 119 84.9
CAN.G3.24 Capsicum annuum HOM05D000806 ORTHO05D007429 2.4e-52 208.8 119 85.7
Migut.H01166 Erythranthe guttata HOM05D000806 ORTHO05D007429 2.4e-52 208.8 119 84.9
Migut.H01167 Erythranthe guttata HOM05D000806 ORTHO05D007429 2.4e-52 208.8 119 84.9
Lj2P1237T60 Lonicera japonica HOM05D000806 ORTHO05D007429 2.4e-52 208.8 119 87.4
PSO548G0038 Papaver somniferum HOM05D000806 ORTHO05D007429 3.1e-52 208.4 119 85.7
Peaxi162Scf00041g00229 Petunia axillaris HOM05D000806 ORTHO05D007429 3.1e-52 208.4 118 85.6
Ah.10g027160 Amaranthus hybridus HOM05D000806 ORTHO05D002324 5.3e-52 207.6 117 85.5
Gohir.A12G124900 Gossypium hirsutum HOM05D000806 ORTHO05D007429 6.9e-52 207.2 119 86.6
TAR633G2212 Trochodendron aralioides HOM05D000890 ORTHO05D000697 6.9e-52 207.2 119 85.7
RcHm_v2.0_Chr5g0042981 Rosa chinensis HOM05D000806 ORTHO05D007429 9.0e-52 206.8 119 87.4
Lalb_Chr23g0274521 Lupinus albus HOM05D000806 ORTHO05D007429 1.5e-51 206.1 119 85.7
Sc22g0003430 Simmondsia chinensis HOM05D000806 ORTHO05D007429 2.0e-51 205.7 119 84.0
Peaxi162Scf00021g00088 Petunia axillaris HOM05D000806 ORTHO05D007429 2.2e-50 202.2 119 84.0
Sc03g0009990 Simmondsia chinensis HOM05D000806 ORTHO05D007429 3.8e-50 201.4 119 82.4
Eucgr.I02538 Eucalyptus grandis HOM05D000806 ORTHO05D007429 8.4e-50 200.3 119 83.2
EL10Ac4g09266 Beta vulgaris HOM05D000806 ORTHO05D007429 1.1e-49 199.9 119 81.5
EL10Ac6g15047 Beta vulgaris HOM05D000806 ORTHO05D002324 1.4e-49 199.5 117 82.9
AUR62004684 Chenopodium quinoa HOM05D000806 ORTHO05D002320 1.9e-49 199.1 119 80.7
Hund28749 Selenicereus undatus HOM05D000806 ORTHO05D007429 3.2e-49 198.4 117 82.9
Hund28839 Selenicereus undatus HOM05D000806 ORTHO05D007429 3.2e-49 198.4 117 82.9
Hund31110 Selenicereus undatus HOM05D000806 ORTHO05D007429 3.2e-49 198.4 117 82.9
HanXRQChr11g0345151 Helianthus annuus HOM05D000806 ORTHO05D007429 5.4e-49 197.6 119 81.5
Hund29829 Selenicereus undatus HOM05D000806 ORTHO05D007429 3.5e-48 194.9 117 82.1
Lsat_1_v5_gn_9_43721 Lactuca sativa HOM05D000806 ORTHO05D007429 1.3e-47 193.0 119 79.8
HanXRQChr15g0474091 Helianthus annuus HOM05D000806 ORTHO05D007429 1.7e-47 192.6 119 79.8
Hund03830 Selenicereus undatus HOM05D000806 ORTHO05D007429 1.7e-47 192.6 117 81.2
CDE02G2600 Ceratophyllum demersum HOM05D000806 ORTHO05D002320 1.1e-46 189.9 113 82.3
Haze_07716 Corylus avellana HOM05D000806 ORTHO05D007429 2.4e-44 182.2 119 78.2
SEGI_09545 Sequoiadendron giganteum HOM05D000806 ORTHO05D007429 1.5e-43 179.5 119 73.9
Nitab4.5_0007680g0030 Nicotiana tabacum HOM05D000806 ORTHO05D007429 3.4e-43 178.3 117 76.9
Sabra10G0056300 Salix brachista HOM05D000806 ORTHO05D002320 3.2e-41 171.8 96 89.6
SEGI_20028 Sequoiadendron giganteum HOM05D000806 ORTHO05D007429 9.3e-41 170.2 114 72.8
SEGI_23528 Sequoiadendron giganteum HOM05D000388 ORTHO05D000473 9.3e-41 170.2 118 70.3
Gohir.1Z049999 Gossypium hirsutum HOM05D000806 ORTHO05D002320 1.2e-40 169.9 97 86.6
SEGI_10580 Sequoiadendron giganteum HOM05D000580 ORTHO05D001362 1.6e-40 169.5 113 73.5
Gohir.D01G102333 Gossypium hirsutum HOM05D000806 ORTHO05D002320 3.5e-40 168.3 97 85.6
SabraPtG0003400 Salix brachista HOM05D000806 ORTHO05D002324 3.5e-40 168.3 94 89.4
Gorai.004G061100 Gossypium raimondii HOM05D000806 ORTHO05D007429 4.6e-40 167.9 112 73.2
HanXRQChr16g0528981 Helianthus annuus HOM05D000806 ORTHO05D007429 7.9e-40 167.2 119 68.9
Solyc00g500066.1 Solanum lycopersicum HOM05D000806 ORTHO05D007429 1.0e-39 166.8 97 83.5
Dinv26731 Davidia involucrata HOM05D001133 ORTHO05D000941 1.3e-39 166.4 96 85.4
Dinv29307 Davidia involucrata HOM05D001133 ORTHO05D000941 1.3e-39 166.4 96 85.4
Ah.09g227360 Amaranthus hybridus HOM05D000806 ORTHO05D007429 2.3e-39 165.6 97 82.5
Solyc00g500019.1 Solanum lycopersicum HOM05D000806 ORTHO05D007429 2.3e-39 165.6 95 85.3
QL93p0311_0018 Quercus lobata HOM05D000806 ORTHO05D002320 3.0e-39 165.2 97 83.5
SEGI_09273 Sequoiadendron giganteum HOM05D000806 ORTHO05D007429 3.0e-39 165.2 112 72.3
Sopen07g012430 Solanum pennellii HOM05D000004 ORTHO05D002324 5.1e-39 164.5 94 85.1
Ah.10g027380 Amaranthus hybridus HOM05D000806 ORTHO05D007429 6.7e-39 164.1 94 84.0
unitig_91.g26508 Utricularia gibba HOM05D000806 ORTHO05D002320 6.7e-39 164.1 97 80.4
CsaV3_UNG209270 Cucumis sativus L. HOM05D000806 ORTHO05D007429 1.1e-38 163.3 94 87.2
ECA074G0009 Erigeron canadensis HOM05D000806 ORTHO05D002324 1.1e-38 163.3 95 82.1
ECA077G0001 Erigeron canadensis HOM05D000806 ORTHO05D002324 1.1e-38 163.3 95 82.1
Cfa021575 Carpinus fangiana HOM05D000806 ORTHO05D002324 1.5e-38 162.9 94 86.2
Lj2C1239T39 Lonicera japonica HOM05D000806 ORTHO05D002320 1.9e-38 162.5 95 86.3
Ah.10g027510 Amaranthus hybridus HOM05D000806 ORTHO05D002324 2.5e-38 162.2 95 82.1
HanXRQChr02g0038641 Helianthus annuus HOM05D000806 ORTHO05D007429 7.4e-38 160.6 119 70.6
Ah.03g144240 Amaranthus hybridus HOM05D000806 ORTHO05D002324 1.3e-37 159.8 96 80.2
EL10As1g23054 Beta vulgaris HOM05D000806 ORTHO05D002324 1.8e-36 156.0 95 80.0
Gorai.011G115400 Gossypium raimondii HOM05D000806 ORTHO05D007429 2.4e-36 155.6 92 82.6
Medtr0002s0680 Medicago truncatula HOM05D000806 ORTHO05D007429 2.4e-36 155.6 98 79.6
BraSC25t45848Z Brassica rapa HOM05D000806 ORTHO05D007429 5.3e-36 154.5 76 97.4
Nn010s41444 Nelumbo nucifera HOM05D000806 ORTHO05D007429 6.9e-36 154.1 119 68.1
Hund31091 Selenicereus undatus HOM05D000806 ORTHO05D007429 9.0e-36 153.7 95 78.9
vmacro22411 Vaccinium macrocarpon HOM05D000806 ORTHO05D007429 9.0e-36 153.7 90 81.1
CAN.G1478.9 Capsicum annuum HOM05D000806 ORTHO05D002320 1.2e-35 153.3 94 80.9
RhsimPtG0003100 Rhododendron simsii HOM05D000806 ORTHO05D002324 3.4e-35 151.8 89 80.9
Gorai.004G277000 Gossypium raimondii HOM05D000806 ORTHO05D007429 4.5e-35 151.4 86 87.2
Hund19837 Selenicereus undatus HOM05D000806 ORTHO05D007429 4.5e-35 151.4 93 81.7
Solyc10g045220.1 Solanum lycopersicum HOM05D000806 ORTHO05D002324 1.4e-33 146.4 117 66.7
BraA10t43926Z Brassica rapa HOM05D000806 ORTHO05D007429 3.2e-33 145.2 80 90.0
Gohir.1Z050266 Gossypium hirsutum HOM05D000806 ORTHO05D002320 3.2e-33 145.2 85 82.4
Gohir.D11G225901 Gossypium hirsutum HOM05D000806 ORTHO05D007429 3.2e-33 145.2 93 74.2
Gohir.D10G105733 Gossypium hirsutum HOM05D000806 ORTHO05D007429 9.3e-33 143.7 88 78.4
Hund28451 Selenicereus undatus HOM05D000806 ORTHO05D007429 6.0e-32 141.0 117 65.0
Hund22773 Selenicereus undatus HOM05D000806 ORTHO05D007429 2.3e-31 139.0 89 77.5
GSVIVG01030619001 Vitis vinifera HOM05D000806 ORTHO05D007429 5.1e-31 137.9 112 68.8
Gohir.D04G129256 Gossypium hirsutum HOM05D000806 ORTHO05D002320 6.7e-31 137.5 91 74.7
LjContig00318g0003161 Lotus japonicus HOM05D000806 ORTHO05D007429 1.5e-30 136.3 125 56.8
MCO14G322 Micromonas commoda HOM05D000806 ORTHO05D007429 9.6e-30 133.7 117 53.0
Gorai.007G243500 Gossypium raimondii HOM05D000806 ORTHO05D007429 3.7e-29 131.7 78 80.8
EL10Ac9g20703 Beta vulgaris HOM05D000806 ORTHO05D007429 1.1e-28 130.2 97 66.0
Oeu062853.1 Olea europaea HOM05D000806 ORTHO05D007429 2.4e-28 129.0 97 72.2
Gorai.012G112600 Gossypium raimondii HOM05D000806 ORTHO05D007429 6.9e-28 127.5 97 66.0
Phvul.002G278112 Phaseolus vulgaris HOM05D000806 ORTHO05D007429 1.7e-26 122.9 124 51.6
Potri.016G094067 Populus trichocarpa HOM05D000806 ORTHO05D007429 2.2e-26 122.5 68 85.3
Nn3g16863 Nelumbo nucifera HOM05D000806 ORTHO05D007429 1.1e-25 120.2 70 82.9
Medtr4g034770 Medicago truncatula HOM05D000806 ORTHO05D002320 7.2e-25 117.5 121 50.4
VMungo0586G0001 Vigna mungo HOM05D000806 ORTHO05D007429 1.6e-24 116.3 125 50.4
Hund27898 Selenicereus undatus HOM05D000806 ORTHO05D002324 4.6e-24 114.8 70 78.6
Hund29706 Selenicereus undatus HOM05D000806 ORTHO05D002324 4.6e-24 114.8 70 78.6
Hund29710 Selenicereus undatus HOM05D000806 ORTHO05D002324 4.6e-24 114.8 70 78.6
Hund29827 Selenicereus undatus HOM05D000806 ORTHO05D002324 4.6e-24 114.8 70 78.6
Hund29835 Selenicereus undatus HOM05D000806 ORTHO05D002324 4.6e-24 114.8 70 78.6
Hund28893 Selenicereus undatus HOM05D000806 ORTHO05D002324 1.3e-23 113.2 69 78.3
Hund29727 Selenicereus undatus HOM05D000806 ORTHO05D002324 1.3e-23 113.2 69 78.3
Hund29858 Selenicereus undatus HOM05D000806 ORTHO05D002324 1.3e-23 113.2 69 78.3
Hund29866 Selenicereus undatus HOM05D000806 ORTHO05D002324 1.3e-23 113.2 69 78.3
Hund30695 Selenicereus undatus HOM05D000806 ORTHO05D002324 1.3e-23 113.2 69 78.3
Nitab4.5_0009663g0060 Nicotiana tabacum HOM05D000806 ORTHO05D007429 1.8e-23 112.8 66 81.8
BolC9t58296H Brassica oleracea HOM05D000806 ORTHO05D007429 5.1e-23 111.3 63 90.5
Nitab4.5_0004697g0020 Nicotiana tabacum HOM05D000806 ORTHO05D007429 6.7e-23 110.9 118 55.1
Lalb_Chr25g0282881 Lupinus albus HOM05D000806 ORTHO05D007429 1.3e-21 106.7 63 85.7
EL10As15g24119 Beta vulgaris HOM05D000806 ORTHO05D002320 2.2e-21 105.9 96 60.4
arahy.Tifrunner.gnm1.ann1.Y8HZNS Arachis hypogaea HOM05D000806 ORTHO05D002320 1.1e-20 103.6 60 85.0
CDE02G0843 Ceratophyllum demersum HOM05D001966 ORTHO05D007227 1.4e-20 103.2 62 82.3
Sed0021403 Sechium edule HOM05D000806 ORTHO05D002324 1.4e-20 103.2 61 85.2
arahy.Tifrunner.gnm1.ann1.YJGE71 Arachis hypogaea HOM05D000806 ORTHO05D007429 2.0e-19 99.4 72 69.4
SEGI_39120 Sequoiadendron giganteum HOM05D000806 ORTHO05D002324 2.6e-19 99.0 70 67.1
arahy.Tifrunner.gnm1.ann1.X4SEM1 Arachis hypogaea HOM05D000540 ORTHO05D000681 4.5e-19 98.2 59 83.1
Ah.10g027920 Amaranthus hybridus HOM05D000806 ORTHO05D002324 2.5e-17 92.4 53 83.0
Ah.10g028630 Amaranthus hybridus HOM05D000806 ORTHO05D002324 2.5e-17 92.4 53 83.0
ATR1137G001 Amborella trichopoda HOM05D000806 ORTHO05D007429 7.2e-17 90.9 55 81.8
HanXRQChr09g0257581 Helianthus annuus HOM05D000806 ORTHO05D007429 7.2e-17 90.9 59 72.9
SMO086G0044 Selaginella moellendorffii HOM05D000806 ORTHO05D007429 9.4e-17 90.5 111 43.2
BolSC46t61000H Brassica oleracea HOM05D000806 ORTHO05D007429 6.1e-16 87.8 47 87.2
HanXRQChr02g0044901 Helianthus annuus HOM05D000806 ORTHO05D007429 6.1e-16 87.8 47 85.1
Nitab4.5_0010235g0030 Nicotiana tabacum HOM05D000806 ORTHO05D007429 1.0e-15 87.0 78 57.7
Hund10571 Selenicereus undatus HOM05D000806 ORTHO05D007429 1.4e-15 86.7 110 47.3
HanXRQChr11g0337941 Helianthus annuus HOM05D000806 ORTHO05D007429 3.9e-15 85.1 75 57.3
FAN12G3683 Fragaria x ananassa HOM05D000681 ORTHO05D035426 1.5e-14 83.2 88 56.8
EL10As15g24117 Beta vulgaris HOM05D000806 ORTHO05D007429 9.7e-14 80.5 52 73.1
HanXRQChr09g0267831 Helianthus annuus HOM05D000806 ORTHO05D007429 2.2e-13 79.3 60 65.0
TAR371G0631 Trochodendron aralioides HOM05D000806 ORTHO05D007429 2.2e-13 79.3 49 81.6
FAN17G0466 Fragaria x ananassa HOM05D000806 ORTHO05D007429 4.8e-13 78.2 90 51.1
CAN.G1163.7 Capsicum annuum HOM05D000806 ORTHO05D007429 6.3e-13 77.8 55 72.7
Gohir.A07G166934 Gossypium hirsutum HOM05D000806 ORTHO05D007429 1.4e-12 76.6 41 87.8
Hund08021 Selenicereus undatus HOM05D002432 ORTHO05D000695 4.5e-11 71.6 49 73.5
SEGI_02123 Sequoiadendron giganteum HOM05D000806 ORTHO05D002324 2.2e-10 69.3 49 69.4
Solyc04g039810.1 Solanum lycopersicum HOM05D000806 ORTHO05D007429 1.1e-09 67.0 41 78.0
SEGI_16956 Sequoiadendron giganteum HOM05D000216 ORTHO05D001131 1.4e-09 66.6 46 73.9
Sed0010807 Sechium edule HOM05D000806 ORTHO05D002320 7.2e-09 64.3 36 86.1
Sed0026664 Sechium edule HOM05D000806 ORTHO05D002320 9.4e-09 63.9 33 90.9
Nn1g07435 Nelumbo nucifera HOM05D000806 ORTHO05D007429 1.2e-08 63.5 37 78.4
Nn021s41539 Nelumbo nucifera HOM05D000806 ORTHO05D007429 6.1e-08 61.2 37 73.0
HanXRQChr08g0210351 Helianthus annuus HOM05D000806 ORTHO05D007429 7.9e-08 60.8 33 84.8
Migut.H00990 Erythranthe guttata HOM05D000806 ORTHO05D007429 8.8e-07 57.4 35 82.9
Solyc05g016120.2 Solanum lycopersicum HOM05D001387 ORTHO05D001250 1.5e-06 56.6 70 45.7
SGA_v2.0_scaffold213G42216 Striga asiatica HOM05D000806 ORTHO05D007429 1.5e-06 56.6 36 69.4


User provided reference genes

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