Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G11140 Arabidopsis lyrata HOM05D005196 ORTHO05D006107 2.8e-126 455.3 232 100.0
AT1G63970 Arabidopsis thaliana HOM05D005196 ORTHO05D006107 6.7e-120 434.1 232 96.1
CARHR047010 Cardamine hirsuta HOM05D005196 ORTHO05D006107 8.8e-112 407.1 231 90.9
Carub.0002s0087 Capsella rubella HOM05D005196 ORTHO05D006107 1.4e-109 399.8 233 89.7
Sp2g00720 Schrenkiella parvula HOM05D005196 ORTHO05D006107 4.2e-106 388.3 238 85.7
BcaB07g31421 Brassica carinata HOM05D005196 ORTHO05D006107 2.2e-102 375.9 240 83.8
BraA09t37052Z Brassica rapa HOM05D005196 ORTHO05D006107 2.8e-102 375.6 238 84.0
A09p14050 Brassica napus HOM05D005196 ORTHO05D006107 4.8e-102 374.8 238 84.9
A09p15170 Brassica napus HOM05D005196 ORTHO05D006107 1.4e-101 373.2 238 84.5
BraA09t37159Z Brassica rapa HOM05D005196 ORTHO05D006107 1.8e-101 372.9 238 84.0
BolC9t54591H Brassica oleracea HOM05D005196 ORTHO05D006107 5.4e-101 371.3 231 85.3
Aa31LG2G1060 Aethionema arabicum HOM05D005196 ORTHO05D006107 1.6e-100 369.8 236 82.2
BcaC04g22662 Brassica carinata HOM05D005196 ORTHO05D006107 2.0e-100 369.4 238 82.8
C09p16940 Brassica napus HOM05D005196 ORTHO05D006107 4.5e-100 368.2 238 82.4
BcaB07g31533 Brassica carinata HOM05D005196 ORTHO05D006107 2.9e-99 365.5 241 81.7
C09p18370 Brassica napus HOM05D005196 ORTHO05D006107 8.6e-99 364.0 239 84.1
BolC9t54730H Brassica oleracea HOM05D005196 ORTHO05D006107 8.6e-99 364.0 239 84.1
BcaC04g22518 Brassica carinata HOM05D005196 ORTHO05D006107 1.5e-98 363.2 238 84.0
THA.LOC104809368 Tarenaya hassleriana HOM05D005196 ORTHO05D006107 8.0e-97 357.5 235 78.3
THA.LOC104823600 Tarenaya hassleriana HOM05D005196 ORTHO05D006107 1.3e-94 350.1 235 78.3
Cpa.g.sc631.3 Carica papaya HOM05D005196 ORTHO05D006107 2.0e-92 342.8 200 82.5
PGR031G3114 Punica granatum HOM05D005196 ORTHO05D006107 1.7e-91 339.7 206 82.0
FAN08G3453 Fragaria x ananassa HOM05D005196 ORTHO05D006107 5.0e-91 338.2 235 74.9
FAN13G1103 Fragaria x ananassa HOM05D005196 ORTHO05D006107 1.9e-90 336.3 227 76.2
MD14G1111600 Malus domestica HOM05D005196 ORTHO05D006107 1.9e-90 336.3 210 79.5
HanXRQChr03g0085971 Helianthus annuus HOM05D005196 ORTHO05D006107 2.5e-90 335.9 238 74.8
Lsat_1_v5_gn_6_84980 Lactuca sativa HOM05D005196 ORTHO05D006107 2.5e-90 335.9 236 74.6
Potri.003G132400 Populus trichocarpa HOM05D005196 ORTHO05D006107 2.5e-90 335.9 196 84.7
Potri.001G099300 Populus trichocarpa HOM05D005196 ORTHO05D006107 5.6e-90 334.7 199 82.4
QL12p031809 Quercus lobata HOM05D005196 ORTHO05D006107 5.6e-90 334.7 200 81.0
Ciclev10021991m.g Citrus clementina HOM05D005196 ORTHO05D006107 1.2e-89 333.6 226 77.0
FAN18G0698 Fragaria x ananassa HOM05D005196 ORTHO05D006107 1.6e-89 333.2 180 87.8
FAN04G1400 Fragaria x ananassa HOM05D005196 ORTHO05D006107 2.1e-89 332.8 226 75.7
FvH4_5g03170 Fragaria vesca HOM05D005196 ORTHO05D006107 3.6e-89 332.0 227 75.3
MSTRG.11956 Avicennia marina HOM05D005196 ORTHO05D006107 8.0e-89 330.9 198 81.8
Gohir.D03G078300 Gossypium hirsutum HOM05D005196 ORTHO05D006107 1.0e-88 330.5 215 78.6
Gorai.003G085800 Gossypium raimondii HOM05D005196 ORTHO05D006107 1.0e-88 330.5 215 78.6
GSVIVG01019415001 Vitis vinifera HOM05D005196 ORTHO05D006107 1.0e-88 330.5 180 88.3
Migut.A00721 Erythranthe guttata HOM05D005196 ORTHO05D006107 1.8e-88 329.7 236 73.7
Sabra03G0094900 Salix brachista HOM05D005196 ORTHO05D006107 1.8e-88 329.7 196 83.7
COL.COLO4_08364 Corchorus olitorius HOM05D005196 ORTHO05D006107 2.3e-88 329.3 191 85.3
Nn1g01669 Nelumbo nucifera HOM05D005196 ORTHO05D006107 2.3e-88 329.3 197 81.2
PSO478G4030 Papaver somniferum HOM05D005196 ORTHO05D006107 2.3e-88 329.3 178 87.6
PSO782G4831 Papaver somniferum HOM05D005196 ORTHO05D006107 2.3e-88 329.3 178 87.6
RcHm_v2.0_Chr7g0196611 Rosa chinensis HOM05D005196 ORTHO05D006107 2.3e-88 329.3 226 73.5
Sed0013368 Sechium edule HOM05D005196 ORTHO05D006107 3.0e-88 328.9 225 75.6
Aqoxy7G00203 Aquilegia oxysepala HOM05D005196 ORTHO05D006107 4.0e-88 328.6 199 80.4
Duzib068G0196 Durio zibethinus HOM05D005196 ORTHO05D006107 4.0e-88 328.6 187 87.7
Duzib205G0943 Durio zibethinus HOM05D005196 ORTHO05D006107 4.0e-88 328.6 218 77.5
Hma1.2p1_0377F.1_g139550 Hydrangea macrophylla HOM05D005196 ORTHO05D006107 6.8e-88 327.8 197 83.2
Thecc.03G286300 Theobroma cacao HOM05D005196 ORTHO05D006107 6.8e-88 327.8 183 85.8
Gohir.A02G105500 Gossypium hirsutum HOM05D005196 ORTHO05D006107 8.9e-88 327.4 213 77.9
Prupe.5G106300 Prunus persica HOM05D005196 ORTHO05D006107 8.9e-88 327.4 210 77.6
arahy.Tifrunner.gnm1.ann1.RG9U10 Arachis hypogaea HOM05D005196 ORTHO05D006107 1.5e-87 326.6 213 75.6
CANSAT21G0568 Cannabis sativa HOM05D005196 ORTHO05D006107 1.5e-87 326.6 226 74.3
Manes.02G017610 Manihot esculenta HOM05D005196 ORTHO05D006107 1.5e-87 326.6 197 82.2
Haze_08760 Corylus avellana HOM05D005196 ORTHO05D006107 2.0e-87 326.2 226 72.6
Hund11434 Selenicereus undatus HOM05D005196 ORTHO05D006107 2.0e-87 326.2 188 83.5
ClCG07G007880 Citrullus lanatus HOM05D005196 ORTHO05D006107 2.6e-87 325.9 199 80.9
Lj2A178G47 Lonicera japonica HOM05D005196 ORTHO05D006107 4.4e-87 325.1 242 71.1
TAR636G2140 Trochodendron aralioides HOM05D005196 ORTHO05D006107 4.4e-87 325.1 180 85.6
Cfa012239 Carpinus fangiana HOM05D005196 ORTHO05D006107 5.7e-87 324.7 187 83.4
DCAR_005572 Daucus carota HOM05D005196 ORTHO05D006107 5.7e-87 324.7 180 87.2
AUR62010748 Chenopodium quinoa HOM05D005196 ORTHO05D006107 7.5e-87 324.3 188 83.0
MELO3C016339.2 Cucumis melo HOM05D005196 ORTHO05D006107 9.8e-87 323.9 192 83.3
Actinidia10607 Actinidia chinensis HOM05D005196 ORTHO05D006107 1.3e-86 323.6 177 87.6
unitig_37.g12237 Utricularia gibba HOM05D005196 ORTHO05D006107 1.3e-86 323.6 191 81.7
Eucgr.E00780 Eucalyptus grandis HOM05D005196 ORTHO05D006107 2.2e-86 322.8 208 76.9
SalBow8G4511 Salvia bowleyana HOM05D005196 ORTHO05D006107 2.2e-86 322.8 195 81.0
Cc08_g15230 Coffea canephora HOM05D005196 ORTHO05D006107 2.9e-86 322.4 182 84.6
CsaV3_4G006100 Cucumis sativus L. HOM05D005196 ORTHO05D006107 2.9e-86 322.4 233 75.1
CAN.G532.37 Capsicum annuum HOM05D005196 ORTHO05D006107 4.9e-86 321.6 201 78.1
CiPaw.11G130000 Carya illinoinensis HOM05D005196 ORTHO05D006107 4.9e-86 321.6 196 78.6
CiPaw.12G089400 Carya illinoinensis HOM05D005196 ORTHO05D006107 6.4e-86 321.2 232 70.7
Gorai.004G137800 Gossypium raimondii HOM05D005196 ORTHO05D006107 8.3e-86 320.9 183 84.2
LjContig00312_ERROPOS870357g0014232 Lotus japonicus HOM05D005196 ORTHO05D006107 1.1e-85 320.5 241 70.1
Peaxi162Scf00074g01724 Petunia axillaris HOM05D005196 ORTHO05D006107 1.1e-85 320.5 230 73.0
Nitab4.5_0007906g0030 Nicotiana tabacum HOM05D005196 ORTHO05D006107 1.4e-85 320.1 235 69.8
Nitab4.5_0003015g0100 Nicotiana tabacum HOM05D005196 ORTHO05D006107 1.8e-85 319.7 216 75.0
Sopen08g029880 Solanum pennellii HOM05D005196 ORTHO05D006107 2.4e-85 319.3 194 79.4
CSS0021900 Camellia sinensis var. sinensis HOM05D005196 ORTHO05D006107 3.2e-85 318.9 237 70.9
PGSC0003DMG400012185 Solanum tuberosum HOM05D005196 ORTHO05D006107 3.2e-85 318.9 226 72.6
Glyma.11G021400 Glycine max HOM05D005196 ORTHO05D006107 4.1e-85 318.5 208 76.4
Sabra01G0074500 Salix brachista HOM05D005196 ORTHO05D006107 4.1e-85 318.5 180 84.4
Solyc08g081570.3 Solanum lycopersicum HOM05D005196 ORTHO05D006107 5.4e-85 318.2 242 69.4
Phvul.002G159900 Phaseolus vulgaris HOM05D005196 ORTHO05D006107 9.2e-85 317.4 239 71.5
SGA_v2.0_scaffold111G31472 Striga asiatica HOM05D005196 ORTHO05D006107 9.2e-85 317.4 201 77.6
Ah.12g051910 Amaranthus hybridus HOM05D005196 ORTHO05D006107 5.9e-84 314.7 216 74.1
ATR0661G112 Amborella trichopoda HOM05D005196 ORTHO05D006107 7.8e-84 314.3 178 83.7
Gohir.D08G134600 Gossypium hirsutum HOM05D005196 ORTHO05D006107 1.0e-83 313.9 190 81.1
MD06G1090700 Malus domestica HOM05D005196 ORTHO05D006107 1.7e-83 313.2 203 76.8
MSTRG.13860 Avicennia marina HOM05D005196 ORTHO05D006107 2.3e-83 312.8 192 77.6
TWI81G1086 Tripterygium wilfordii HOM05D005196 ORTHO05D006107 3.9e-83 312.0 181 81.8
Medtr5g010010 Medicago truncatula HOM05D005196 ORTHO05D006107 1.5e-82 310.1 234 67.9
Rhsim02G0235500 Rhododendron simsii HOM05D005196 ORTHO05D006107 2.5e-82 309.3 165 87.9
Lalb_Chr09g0320831 Lupinus albus HOM05D005196 ORTHO05D006107 7.3e-82 307.8 177 82.5
ECA240G2051 Erigeron canadensis HOM05D000662 ORTHO05D000597 2.8e-81 305.8 220 71.4
Oeu042360.2 Olea europaea HOM05D005196 ORTHO05D006107 2.8e-81 305.8 216 72.2
Os02g0680600 Oryza sativa ssp. japonica HOM05D005196 ORTHO05D006107 2.8e-81 305.8 233 71.2
HPP92_025411 Vanilla planifolia HOM05D005196 ORTHO05D006107 2.8e-81 305.8 235 68.9
SGA_v2.0_scaffold144G35903 Striga asiatica HOM05D005196 ORTHO05D006107 3.6e-81 305.4 222 70.7
Ca_24538_v3 Cicer arietinum L. HOM05D005196 ORTHO05D006107 1.1e-80 303.9 229 66.8
Pp3c3_18960 Physcomitrium patens HOM05D005196 ORTHO05D006107 2.6e-79 299.3 180 78.3
Sc01g0009830 Simmondsia chinensis HOM05D005196 ORTHO05D006107 2.6e-79 299.3 189 75.7
SMO118G0129 Selaginella moellendorffii HOM05D005196 ORTHO05D006107 4.4e-79 298.5 180 77.2
Mapoly0107s0035 Marchantia polymorpha HOM05D005196 ORTHO05D006107 2.9e-78 295.8 180 78.9
SEGI_33828 Sequoiadendron giganteum HOM05D005196 ORTHO05D006107 3.7e-78 295.4 182 78.6
arahy.Tifrunner.gnm1.ann1.072U0I Arachis hypogaea HOM05D005196 ORTHO05D006107 7.0e-77 291.2 213 69.5
Eucgr.L03318 Eucalyptus grandis HOM05D005196 ORTHO05D006107 6.6e-75 284.6 186 75.3
CBR_g41628 Chara braunii HOM05D005196 ORTHO05D006107 5.6e-74 281.6 182 73.1
EL10Ac5g12833 Beta vulgaris HOM05D005196 ORTHO05D006107 1.8e-72 276.6 232 63.8
Cre12.g503550 Chlamydomonas reinhardtii HOM05D005196 ORTHO05D006107 2.6e-71 272.7 175 73.1
Dinv37598 Davidia involucrata HOM05D005196 ORTHO05D006107 4.9e-70 268.5 152 82.2
PRCOL_00001316 Prasinoderma coloniale HOM05D005196 ORTHO05D006107 9.2e-69 264.2 186 66.1
Ah.07g196720 Amaranthus hybridus HOM05D005196 ORTHO05D006107 3.5e-68 262.3 186 72.6
vmacro11408 Vaccinium macrocarpon HOM05D005196 ORTHO05D006107 6.0e-68 261.5 188 70.2
SEGI_11641 Sequoiadendron giganteum HOM05D005196 ORTHO05D006107 1.2e-65 253.8 180 70.0
TPR.G6615 Trifolium pratense HOM05D005196 ORTHO05D006107 4.0e-64 248.8 238 58.0
MCO02G159 Micromonas commoda HOM05D005196 ORTHO05D006107 8.9e-64 247.7 190 64.2
Actinidia28347 Actinidia chinensis HOM05D005196 ORTHO05D006107 2.7e-60 236.1 154 74.7
Atru.chr9.2118 Acer truncatum HOM05D005196 ORTHO05D006107 9.0e-56 221.1 122 87.7
CDE11G0665 Ceratophyllum demersum HOM05D005196 ORTHO05D006107 1.6e-49 200.3 139 71.2
TAR629G0373 Trochodendron aralioides HOM05D005196 ORTHO05D006107 4.0e-48 195.7 143 67.1
Cfa012243 Carpinus fangiana HOM05D005196 ORTHO05D006107 5.8e-47 191.8 156 62.2
BcaC02g10359 Brassica carinata HOM05D005196 ORTHO05D006107 3.5e-44 182.6 104 88.5
C04p29780 Brassica napus HOM05D005196 ORTHO05D006107 4.6e-44 182.2 104 87.5
Psat2g183400 Pisum sativum HOM05D005196 ORTHO05D006107 2.3e-43 179.9 158 60.1
Zm00001eb187250 Zea mays HOM05D005196 ORTHO05D006107 8.7e-43 177.9 116 75.9
Sed0007168 Sechium edule HOM05D005196 ORTHO05D006107 1.9e-42 176.8 112 79.5
Zm00001eb250670 Zea mays HOM05D005196 ORTHO05D006107 6.9e-40 168.3 91 83.5
Gohir.A08G114400 Gossypium hirsutum HOM05D005196 ORTHO05D006107 2.3e-35 153.3 124 66.9
PSO782G0193 Papaver somniferum HOM05D005196 ORTHO05D006107 6.9e-32 141.7 124 59.7
Cfa012242 Carpinus fangiana HOM05D005196 ORTHO05D006107 4.5e-31 139.0 82 82.9
VMungo0251G1828 Vigna mungo HOM05D005196 ORTHO05D006107 1.0e-30 137.9 78 87.2
Haze_27119 Corylus avellana HOM05D005196 ORTHO05D006107 2.2e-30 136.7 147 42.9
AUR62019751 Chenopodium quinoa HOM05D005196 ORTHO05D006107 1.9e-29 133.7 75 86.7
TAR629G1542 Trochodendron aralioides HOM05D005196 ORTHO05D006107 7.9e-28 128.3 87 75.9
CSS0017594 Camellia sinensis var. sinensis HOM05D005196 ORTHO05D006107 2.0e-23 113.6 77 75.3
BolC4t24512H Brassica oleracea HOM05D005196 ORTHO05D006107 1.5e-18 97.4 92 62.0
AagrBONN_evm.TU.Sc2ySwM_344.1771 Anthoceros agrestis HOM05D005196 ORTHO05D006107 1.9e-18 97.1 76 59.2
Gohir.A08G114450 Gossypium hirsutum HOM05D005196 ORTHO05D006107 3.4e-15 86.3 49 83.7
MD06G1092700 Malus domestica HOM05D005196 ORTHO05D006107 3.9e-11 72.8 103 42.7
MD13G1222800 Malus domestica HOM05D005196 ORTHO05D006107 5.7e-10 68.9 47 68.1
C04p29790 Brassica napus HOM05D005196 ORTHO05D006107 3.1e-08 63.2 28 92.9
BolC4t24513H Brassica oleracea HOM05D005196 ORTHO05D006107 3.1e-08 63.2 28 92.9
Hund14271 Selenicereus undatus HOM05D007428 ORTHO05D009308 3.4e-07 59.7 32 81.2
MD14G1120300 Malus domestica HOM05D005196 ORTHO05D006107 2.2e-06 57.0 47 53.2


User provided reference genes

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