Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G62970 Arabidopsis lyrata HOM05D026857 ORTHO05D026762 1.4e-117 426.4 233 100.0
AT1G54240 Arabidopsis thaliana HOM05D026857 ORTHO05D026762 6.6e-75 284.6 236 69.1
Carub.0001s4348 Capsella rubella HOM05D026857 ORTHO05D026762 1.2e-47 194.1 214 52.3
AT1G54230 Arabidopsis thaliana HOM05D026857 ORTHO05D026762 8.8e-27 124.8 215 39.1
ClCG07G013890 Citrullus lanatus HOM05D001027 ORTHO05D000844 8.0e-12 75.1 196 30.6
Actinidia39707 Actinidia chinensis HOM05D001027 ORTHO05D000844 4.0e-11 72.8 209 32.5
MELO3C013078.2 Cucumis melo HOM05D001027 ORTHO05D000844 8.8e-11 71.6 208 28.8
Sed0025250 Sechium edule HOM05D001027 ORTHO05D000844 2.6e-10 70.1 168 29.8
Duzib235G1421 Durio zibethinus HOM05D001027 ORTHO05D000844 3.3e-10 69.7 171 30.4
Haze_25941 Corylus avellana HOM05D001027 ORTHO05D000844 4.4e-10 69.3 196 30.1
Phvul.010G136100 Phaseolus vulgaris HOM05D001027 ORTHO05D000844 5.7e-10 68.9 202 30.2
VMungo0331G0967 Vigna mungo HOM05D001027 ORTHO05D000844 9.7e-10 68.2 222 30.6
Phvul.010G136000 Phaseolus vulgaris HOM05D001027 ORTHO05D000844 1.3e-09 67.8 188 29.3
QL02p062075 Quercus lobata HOM05D001027 ORTHO05D000844 1.3e-09 67.8 179 30.7
Sp1g40670 Schrenkiella parvula HOM05D001027 ORTHO05D000844 1.3e-09 67.8 176 35.8
THA.LOC104815633 Tarenaya hassleriana HOM05D001027 ORTHO05D000844 1.7e-09 67.4 193 30.6
Thecc.06G115200 Theobroma cacao HOM05D001027 ORTHO05D000844 1.7e-09 67.4 171 30.4
Manes.04G141700 Manihot esculenta HOM05D001027 ORTHO05D000844 2.2e-09 67.0 170 35.9
BcaB07g33240 Brassica carinata HOM05D020774 ORTHO05D021608 2.8e-09 66.6 180 32.2
Cfa003055 Carpinus fangiana HOM05D001027 ORTHO05D000844 2.8e-09 66.6 179 30.2
Dinv42342 Davidia involucrata HOM05D001027 ORTHO05D000844 2.8e-09 66.6 179 31.3
BcaB02g10853 Brassica carinata HOM05D028077 ORTHO05D095507 3.7e-09 66.2 75 40.0
COL.COLO4_30692 Corchorus olitorius HOM05D001027 ORTHO05D000844 3.7e-09 66.2 179 30.2
Gohir.A05G136700 Gossypium hirsutum HOM05D001027 ORTHO05D000844 3.7e-09 66.2 172 33.7
Gohir.D05G138700 Gossypium hirsutum HOM05D001027 ORTHO05D000844 3.7e-09 66.2 172 33.7
TAR624G1250 Trochodendron aralioides HOM05D001027 ORTHO05D000844 3.7e-09 66.2 173 31.8
CSS0030254 Camellia sinensis var. sinensis HOM05D001027 ORTHO05D000844 4.8e-09 65.9 179 33.0
CSS0035646 Camellia sinensis var. sinensis HOM05D001027 ORTHO05D000844 4.8e-09 65.9 189 30.7
CSS0046266 Camellia sinensis var. sinensis HOM05D001027 ORTHO05D000844 4.8e-09 65.9 189 30.7
Ciclev10026245m.g Citrus clementina HOM05D001027 ORTHO05D000844 4.8e-09 65.9 179 34.1
Gorai.009G143000 Gossypium raimondii HOM05D001027 ORTHO05D000844 4.8e-09 65.9 172 33.7
Zm00001eb361200 Zea mays HOM05D001027 ORTHO05D000844 4.8e-09 65.9 197 28.9
ECA232G2258 Erigeron canadensis HOM05D001027 ORTHO05D000844 6.3e-09 65.5 207 33.3
Lj5g0001171 Lotus japonicus HOM05D001027 ORTHO05D000844 6.3e-09 65.5 170 33.5
Hma1.2p1_0672F.1_g200980 Hydrangea macrophylla HOM05D001027 ORTHO05D000844 1.1e-08 64.7 179 30.2
Rhsim05G0016500 Rhododendron simsii HOM05D001027 ORTHO05D000844 1.1e-08 64.7 170 32.9
Atru.chr1.3799 Acer truncatum HOM05D001027 ORTHO05D006918 1.4e-08 64.3 174 32.8
Cpa.g.sc25.81 Carica papaya HOM05D001027 ORTHO05D000844 1.4e-08 64.3 169 30.8
QL05p009530 Quercus lobata HOM05D001027 ORTHO05D000844 1.4e-08 64.3 194 30.4
Ca_01220_v3 Cicer arietinum L. HOM05D001027 ORTHO05D000844 1.8e-08 63.9 171 34.5
CsaV3_3G043700 Cucumis sativus L. HOM05D000250 ORTHO05D000625 1.8e-08 63.9 203 28.1
Actinidia39094 Actinidia chinensis HOM05D001027 ORTHO05D000844 2.4e-08 63.5 209 29.2
CiPaw.01G222500 Carya illinoinensis HOM05D001027 ORTHO05D000844 2.4e-08 63.5 166 31.3
Eucgr.C00865 Eucalyptus grandis HOM05D001027 ORTHO05D000844 2.4e-08 63.5 198 29.8
VMungo0331G0759 Vigna mungo HOM05D001027 ORTHO05D000844 2.4e-08 63.5 201 27.4
ECA234G4183 Erigeron canadensis HOM05D001027 ORTHO05D000844 3.1e-08 63.2 204 30.9
GSVIVG01015170001 Vitis vinifera HOM05D001027 ORTHO05D000844 3.1e-08 63.2 194 30.4
CiPaw.04G147800 Carya illinoinensis HOM05D001027 ORTHO05D000844 4.1e-08 62.8 201 28.4
Actinidia26042 Actinidia chinensis HOM05D001027 ORTHO05D000844 5.3e-08 62.4 172 31.4
Oeu051298.2 Olea europaea HOM05D001027 ORTHO05D000844 5.3e-08 62.4 174 29.9
Sp5g27800 Schrenkiella parvula HOM05D001027 ORTHO05D000844 5.3e-08 62.4 180 33.3
Prupe.3G045300 Prunus persica HOM05D001027 ORTHO05D000844 7.0e-08 62.0 194 33.0
Ciclev10009173m.g Citrus clementina HOM05D001027 ORTHO05D000844 9.1e-08 61.6 203 30.5
TPR.G6579 Trifolium pratense HOM05D001027 ORTHO05D000844 9.1e-08 61.6 171 31.0
CAN.G52.16 Capsicum annuum HOM05D001027 ORTHO05D000844 1.6e-07 60.8 181 28.7
Cfa003557 Carpinus fangiana HOM05D001027 ORTHO05D000844 1.6e-07 60.8 170 30.0
FAN23G0537 Fragaria x ananassa HOM05D001027 ORTHO05D000844 1.6e-07 60.8 200 30.0
HanXRQChr12g0354691 Helianthus annuus HOM05D001027 ORTHO05D000844 1.6e-07 60.8 177 29.4
Peaxi162Scf00494g00102 Petunia axillaris HOM05D001027 ORTHO05D000844 1.6e-07 60.8 177 26.6
Potri.006G147400 Populus trichocarpa HOM05D001027 ORTHO05D000844 1.6e-07 60.8 171 31.6
Hund25996 Selenicereus undatus HOM05D001027 ORTHO05D000844 1.6e-07 60.8 166 31.9
FvH4_1g07940 Fragaria vesca HOM05D001027 ORTHO05D000844 2.0e-07 60.5 200 30.0
FAN19G0620 Fragaria x ananassa HOM05D001027 ORTHO05D000844 2.0e-07 60.5 200 30.0
Psat5g289920 Pisum sativum HOM05D001027 ORTHO05D000844 2.0e-07 60.5 172 32.0
HanXRQChr10g0319501 Helianthus annuus HOM05D001027 ORTHO05D000844 2.7e-07 60.1 195 28.2
Oeu039945.2 Olea europaea HOM05D001027 ORTHO05D000844 2.7e-07 60.1 94 40.4
Ah.13g077930 Amaranthus hybridus HOM05D001027 ORTHO05D000844 3.5e-07 59.7 176 32.4
PGR119G1880 Punica granatum HOM05D001027 ORTHO05D000844 3.5e-07 59.7 172 32.0
Ca_23343_v3 Cicer arietinum L. HOM05D001027 ORTHO05D000844 4.5e-07 59.3 182 30.2
Glyma.07G007200 Glycine max HOM05D001027 ORTHO05D000844 4.5e-07 59.3 184 30.4
PGR142G1838 Punica granatum HOM05D001027 ORTHO05D000844 4.5e-07 59.3 185 30.3
THA.LOC104813296 Tarenaya hassleriana HOM05D001027 ORTHO05D000844 4.5e-07 59.3 174 32.2
TWI36G1153 Tripterygium wilfordii HOM05D001027 ORTHO05D000844 4.5e-07 59.3 170 30.6
Cc06_g11670 Coffea canephora HOM05D001027 ORTHO05D000844 5.9e-07 58.9 195 27.2
Thhalv10018950m.g Eutrema salsugineum HOM05D001027 ORTHO05D000844 1.0e-06 58.2 174 30.5
Glyma.08G189900 Glycine max HOM05D001027 ORTHO05D000844 1.0e-06 58.2 184 30.4
PSO173G0140 Papaver somniferum HOM05D001027 ORTHO05D000844 1.0e-06 58.2 169 32.0
Sed0000203 Sechium edule HOM05D001027 ORTHO05D000844 1.0e-06 58.2 195 27.2
CARHR065660 Cardamine hirsuta HOM05D001027 ORTHO05D000844 1.3e-06 57.8 174 31.6
CDE06G2372 Ceratophyllum demersum HOM05D001027 ORTHO05D000844 1.3e-06 57.8 184 27.7
Oeu055350.2 Olea europaea HOM05D001027 ORTHO05D000844 1.3e-06 57.8 171 30.4
Potri.018G066300 Populus trichocarpa HOM05D001027 ORTHO05D000844 1.3e-06 57.8 172 31.4
Solyc03g121840.3 Solanum lycopersicum HOM05D001027 ORTHO05D000844 1.3e-06 57.8 99 32.3
Sopen03g040660 Solanum pennellii HOM05D001027 ORTHO05D000844 1.3e-06 57.8 99 32.3
unitig_32.g11570 Utricularia gibba HOM05D001027 ORTHO05D000844 1.3e-06 57.8 174 29.9
Sopen07g019970 Solanum pennellii HOM05D001027 ORTHO05D000844 1.7e-06 57.4 179 28.5
AT1G72740 Arabidopsis thaliana HOM05D001027 ORTHO05D000844 2.2e-06 57.0 231 27.3
Lj3g0001508 Lotus japonicus HOM05D001027 ORTHO05D000844 2.2e-06 57.0 173 31.8
Medtr2g099610 Medicago truncatula HOM05D001027 ORTHO05D000844 2.9e-06 56.6 173 32.9
TPR.G7889 Trifolium pratense HOM05D000208 ORTHO05D000130 2.9e-06 56.6 169 30.8
TWI34G0703 Tripterygium wilfordii HOM05D001027 ORTHO05D000844 2.9e-06 56.6 172 30.8
arahy.Tifrunner.gnm1.ann1.U3IALR Arachis hypogaea HOM05D001027 ORTHO05D000844 3.8e-06 56.2 61 44.3
Hma1.2p1_1128F.1_g259680 Hydrangea macrophylla HOM05D001027 ORTHO05D000844 3.8e-06 56.2 172 29.7
PSO832G0706 Papaver somniferum HOM05D001027 ORTHO05D000844 3.8e-06 56.2 173 30.1
CARHR018120 Cardamine hirsuta HOM05D001027 ORTHO05D000844 5.0e-06 55.8 179 28.5
Zm00001eb155280 Zea mays HOM05D001027 ORTHO05D000844 5.0e-06 55.8 200 27.0
Atru.chr7.1631 Acer truncatum HOM05D001027 ORTHO05D000844 6.5e-06 55.5 170 27.6
AL2G32420 Arabidopsis lyrata HOM05D001027 ORTHO05D000844 6.5e-06 55.5 178 32.0
Migut.L01522 Erythranthe guttata HOM05D001027 ORTHO05D000844 6.5e-06 55.5 168 29.2
Psat4g184920 Pisum sativum HOM05D001027 ORTHO05D000844 6.5e-06 55.5 167 29.3
Os01g0708000 Oryza sativa ssp. japonica HOM05D001027 ORTHO05D000844 8.5e-06 55.1 176 29.0
Sc18g0002280 Simmondsia chinensis HOM05D001027 ORTHO05D000844 8.5e-06 55.1 168 28.6


User provided reference genes

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