Gene: AT1G54230
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT1G54230
- Transcript Identifier AT1G54230.1
- Gene Type Coding gene
- Location Chr1 : 20250954-20252151 : positive
Gene Family Information
- ID HOM05D026857
- #Genes/#Species 4/3
- Phylogenetic origin
- ID ORTHO05D026762
- #Genes/#Species 4/3
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
- tid AT1G54230.1
- uniprot F4HV91
Descriptions
- Description Winged helix-turn-helix transcription repressor DNA-binding protein
- Computational description Winged helix-turn-helix transcription repressor DNA-binding; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus, nucleosome; EXPRESSED IN: leaf whorl, sperm cell, flower, pollen tube; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Histone H1/H5 (InterPro:IPR005818); BEST Arabidopsis thaliana protein match is: winged-helix DNA-binding transcription factor family protein (TAIR:AT1G54240.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006334 | IEA | Gene Ontology | nucleosome assembly | |
| GO:0006334 | IEA | InterPro | nucleosome assembly | |
| GO:0031936 | IBA | Gene Ontology | negative regulation of chromatin silencing | 1 |
| GO:0030261 | IBA | Gene Ontology | chromosome condensation | 1 |
| GO:0016584 | IBA | Gene Ontology | nucleosome positioning | 1 |
| GO:0045910 | IBA | Gene Ontology | negative regulation of DNA recombination | 1 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003690 | IBA | Gene Ontology | double-stranded DNA binding | 1 |
| GO:0031492 | IBA | Gene Ontology | nucleosomal DNA binding | 1 |
| GO:0003677 | IEA | GOA Database | DNA binding | |
| GO:0003677 | IEA | InterPro | DNA binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0000786 | IEA | Gene Ontology | nucleosome | |
| GO:0000786 | IEA | InterPro | nucleosome | |
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005634 | ISM, IBA | Gene Ontology | nucleus | 1 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR005818 | Linker histone H1/H5, domain H15 |
| Mapman id | Description |
|---|---|
| 35.1 | not assigned.annotated |