Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G34740 Arabidopsis lyrata HOM05D006408 ORTHO05D008038 2.8e-180 635.2 329 100.0
CARHR021960 Cardamine hirsuta HOM05D006408 ORTHO05D008038 9.7e-173 610.1 330 92.7
Sp1g19130 Schrenkiella parvula HOM05D006408 ORTHO05D008038 2.4e-171 605.5 333 92.2
AT1G21600 Arabidopsis thaliana HOM05D006408 ORTHO05D008038 7.5e-165 583.9 329 92.7
C05p20590 Brassica napus HOM05D006408 ORTHO05D008038 2.8e-164 582.0 335 91.9
BolC5t30757H Brassica oleracea HOM05D006408 ORTHO05D008038 2.8e-164 582.0 335 91.9
A06p17690 Brassica napus HOM05D006408 ORTHO05D008038 3.5e-162 575.1 335 90.4
BraA06t24861Z Brassica rapa HOM05D006408 ORTHO05D008038 3.5e-162 575.1 335 90.4
Aa31LG7G5580 Aethionema arabicum HOM05D006408 ORTHO05D008038 9.4e-160 567.0 353 83.9
BcaC05g26077 Brassica carinata HOM05D006408 ORTHO05D008038 1.4e-150 536.6 335 86.3
Carub.0001s2103 Capsella rubella HOM05D006408 ORTHO05D008038 3.7e-148 528.5 329 86.3
BcaB07g32155 Brassica carinata HOM05D006408 ORTHO05D008038 1.5e-141 506.5 334 82.9
Cpa.g.sc26.317 Carica papaya HOM05D006408 ORTHO05D008038 1.2e-138 496.9 329 76.0
THA.LOC104814021 Tarenaya hassleriana HOM05D006408 ORTHO05D008038 2.3e-137 492.7 278 86.0
Cfa018129 Carpinus fangiana HOM05D006408 ORTHO05D008038 1.9e-136 489.6 319 76.2
TAR628G0457 Trochodendron aralioides HOM05D006408 ORTHO05D008038 1.2e-133 480.3 322 75.2
CiPaw.16G022700 Carya illinoinensis HOM05D006408 ORTHO05D008038 3.4e-133 478.8 317 76.0
Gorai.005G087700 Gossypium raimondii HOM05D006408 ORTHO05D008038 1.7e-132 476.5 335 76.4
PGR083G0137 Punica granatum HOM05D006408 ORTHO05D008038 1.7e-132 476.5 279 82.8
CANSAT25G1301 Cannabis sativa HOM05D006408 ORTHO05D008038 8.3e-132 474.2 331 71.9
MELO3C010512.2 Cucumis melo HOM05D006408 ORTHO05D008038 8.3e-132 474.2 277 83.4
ClCG11G015980 Citrullus lanatus HOM05D006408 ORTHO05D008038 9.2e-131 470.7 317 75.7
Aqoxy5G02393 Aquilegia oxysepala HOM05D006408 ORTHO05D008038 1.6e-130 469.9 332 72.9
CsaV3_4G028270 Cucumis sativus L. HOM05D006408 ORTHO05D008038 1.6e-130 469.9 277 82.3
Thecc.08G133100 Theobroma cacao HOM05D006408 ORTHO05D008038 1.6e-130 469.9 334 76.3
Manes.02G168400 Manihot esculenta HOM05D006408 ORTHO05D008038 2.7e-130 469.2 335 71.9
PSO170G2303 Papaver somniferum HOM05D006408 ORTHO05D008038 4.6e-130 468.4 307 75.6
Thhalv10007813m.g Eutrema salsugineum HOM05D006408 ORTHO05D008038 1.7e-129 466.5 263 89.7
PSO017G3385 Papaver somniferum HOM05D006408 ORTHO05D008038 5.0e-129 464.9 283 79.5
MD08G1159400 Malus domestica HOM05D006408 ORTHO05D008038 8.6e-129 464.2 293 79.5
Prupe.1G489500 Prunus persica HOM05D006408 ORTHO05D008038 1.5e-128 463.4 319 74.0
MBI03_g48069_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 1.9e-128 463.0 291 78.0
EL10Ac1g01346 Beta vulgaris HOM05D006408 ORTHO05D008038 3.3e-128 462.2 324 72.8
Nitab4.5_0001168g0170 Nicotiana tabacum HOM05D006408 ORTHO05D008038 3.6e-127 458.8 327 71.3
RcHm_v2.0_Chr6g0296711 Rosa chinensis HOM05D006408 ORTHO05D008038 6.2e-127 458.0 322 70.5
Atru.chr13.1568 Acer truncatum HOM05D006408 ORTHO05D008038 3.1e-126 455.7 334 70.4
Sopen04g025710 Solanum pennellii HOM05D006408 ORTHO05D008038 6.8e-126 454.5 325 72.0
Glyma.04G087000 Glycine max HOM05D006408 ORTHO05D008038 8.9e-126 454.1 280 78.6
Nn1g08961 Nelumbo nucifera HOM05D006408 ORTHO05D008038 8.9e-126 454.1 327 70.0
Ca_16607_v3 Cicer arietinum L. HOM05D006408 ORTHO05D008038 2.0e-125 453.0 340 67.1
Solyc04g057870.3 Solanum lycopersicum HOM05D006408 ORTHO05D008038 2.6e-125 452.6 325 71.7
Potri.002G078900 Populus trichocarpa HOM05D006408 ORTHO05D008038 3.4e-125 452.2 325 71.7
CAN.G288.5 Capsicum annuum HOM05D006408 ORTHO05D008038 1.7e-124 449.9 319 71.8
Peaxi162Scf00066g00222 Petunia axillaris HOM05D006408 ORTHO05D008038 8.3e-124 447.6 323 70.6
CDE06G0572 Ceratophyllum demersum HOM05D006408 ORTHO05D008038 2.4e-123 446.0 302 72.8
Glyma.06G117500 Glycine max HOM05D006408 ORTHO05D008038 3.2e-123 445.7 284 77.1
Psat5g084760 Pisum sativum HOM05D006408 ORTHO05D008038 1.6e-122 443.4 312 70.8
DCAR_003587 Daucus carota HOM05D006408 ORTHO05D008038 2.1e-122 443.0 260 81.9
Eucgr.A00239 Eucalyptus grandis HOM05D006408 ORTHO05D008038 1.3e-121 440.3 334 69.8
CSS0036755 Camellia sinensis var. sinensis HOM05D006408 ORTHO05D008038 1.1e-120 437.2 252 83.3
FAN20G2488 Fragaria x ananassa HOM05D006408 ORTHO05D008038 1.1e-120 437.2 297 72.1
Phvul.009G129900 Phaseolus vulgaris HOM05D006408 ORTHO05D008038 2.5e-120 436.0 294 71.1
Medtr3g088605 Medicago truncatula HOM05D006408 ORTHO05D008038 3.3e-120 435.6 331 66.5
arahy.Tifrunner.gnm1.ann1.227FW7 Arachis hypogaea HOM05D006408 ORTHO05D008038 7.3e-120 434.5 327 68.8
arahy.Tifrunner.gnm1.ann1.8X384Y Arachis hypogaea HOM05D006408 ORTHO05D008038 1.2e-119 433.7 327 68.2
Actinidia15213 Actinidia chinensis HOM05D006408 ORTHO05D008038 1.6e-119 433.3 314 72.3
VMungo1309G0712 Vigna mungo HOM05D006408 ORTHO05D008038 2.8e-119 432.6 319 67.1
Hma1.2p1_1121F.1_g259280 Hydrangea macrophylla HOM05D006408 ORTHO05D008038 3.6e-119 432.2 277 77.6
ATR0568G086 Amborella trichopoda HOM05D006408 ORTHO05D008038 8.1e-119 431.0 276 75.4
CDE04G0676 Ceratophyllum demersum HOM05D006408 ORTHO05D008038 5.2e-118 428.3 308 70.5
Lalb_Chr08g0241101 Lupinus albus HOM05D006408 ORTHO05D008038 6.8e-118 427.9 327 66.4
PGSC0003DMG400028061 Solanum tuberosum HOM05D006408 ORTHO05D008038 1.5e-117 426.8 336 67.6
TPR.G28811 Trifolium pratense HOM05D006408 ORTHO05D008038 1.5e-117 426.8 331 65.9
unitig_52.g17545 Utricularia gibba HOM05D006408 ORTHO05D008038 7.6e-117 424.5 277 73.6
FAN24G2159 Fragaria x ananassa HOM05D006408 ORTHO05D008038 9.9e-117 424.1 336 66.4
Sed0021255 Sechium edule HOM05D006408 ORTHO05D008038 9.9e-117 424.1 277 77.6
BolC8t49731H Brassica oleracea HOM05D006408 ORTHO05D008038 2.2e-116 422.9 340 67.9
FAN27G1901 Fragaria x ananassa HOM05D006408 ORTHO05D008038 4.9e-116 421.8 336 65.5
FAN15G0171 Fragaria x ananassa HOM05D006408 ORTHO05D008038 6.4e-116 421.4 253 80.6
Gohir.D02G078200 Gossypium hirsutum HOM05D006408 ORTHO05D008038 6.4e-116 421.4 335 69.9
Ciclev10001886m.g Citrus clementina HOM05D006408 ORTHO05D008038 4.1e-115 418.7 323 68.1
GSVIVG01008807001 Vitis vinifera HOM05D006408 ORTHO05D008038 1.2e-114 417.2 221 88.2
QL09p032485 Quercus lobata HOM05D006408 ORTHO05D008038 3.5e-114 415.6 223 87.4
Oeu047179.2 Olea europaea HOM05D006408 ORTHO05D008038 4.6e-114 415.2 225 85.8
Lj4A682G50 Lonicera japonica HOM05D006408 ORTHO05D008038 2.3e-113 412.9 247 80.6
HanXRQChr02g0045521 Helianthus annuus HOM05D006408 ORTHO05D008038 5.1e-113 411.8 281 74.0
HPP92_009911 Vanilla planifolia HOM05D006408 ORTHO05D008038 5.1e-113 411.8 284 71.1
MSTRG.22398 Avicennia marina HOM05D006408 ORTHO05D008038 3.3e-112 409.1 275 75.3
A08p28910 Brassica napus HOM05D006408 ORTHO05D008038 1.2e-111 407.1 206 95.1
Migut.N03260 Erythranthe guttata HOM05D006408 ORTHO05D008038 1.6e-111 406.8 225 84.4
Lj1g0002290 Lotus japonicus HOM05D006408 ORTHO05D008038 2.8e-111 406.0 332 67.8
Cc10_g13760 Coffea canephora HOM05D006408 ORTHO05D008038 4.7e-111 405.2 327 65.4
FvH4_2g27850 Fragaria vesca HOM05D006408 ORTHO05D008038 2.4e-110 402.9 225 82.7
ECA236G3303 Erigeron canadensis HOM05D006408 ORTHO05D008038 8.4e-108 394.4 321 64.5
Ah.10g032560 Amaranthus hybridus HOM05D006408 ORTHO05D008038 1.2e-106 390.6 276 71.4
Lsat_1_v5_gn_1_7780 Lactuca sativa HOM05D006408 ORTHO05D008038 2.1e-106 389.8 244 77.9
Hund17341 Selenicereus undatus HOM05D006408 ORTHO05D008038 1.0e-97 360.9 289 66.4
Gohir.A02G071000 Gossypium hirsutum HOM05D006408 ORTHO05D008038 1.8e-97 360.1 333 64.0
Os11g0110100 Oryza sativa ssp. japonica HOM05D006408 ORTHO05D008038 3.1e-94 349.4 226 72.1
Os12g0110400 Oryza sativa ssp. japonica HOM05D006408 ORTHO05D008038 3.1e-94 349.4 226 72.1
AUR62007717 Chenopodium quinoa HOM05D006408 ORTHO05D008038 4.0e-94 349.0 322 60.2
AUR62013426 Chenopodium quinoa HOM05D006408 ORTHO05D008038 1.2e-93 347.4 322 59.9
Nitab4.5_0003978g0010 Nicotiana tabacum HOM05D006408 ORTHO05D008038 2.6e-93 346.3 256 69.1
C08p20930 Brassica napus HOM05D006408 ORTHO05D008038 9.9e-93 344.4 262 70.6
Zm00001eb195160 Zea mays HOM05D006408 ORTHO05D008038 1.1e-91 340.9 302 57.6
SGA_v2.0_scaffold25G11139 Striga asiatica HOM05D006408 ORTHO05D008038 1.3e-89 334.0 363 51.8
Rhsim06G0091400 Rhododendron simsii HOM05D006408 ORTHO05D008038 1.4e-86 323.9 426 45.5
Sc26g0002930 Simmondsia chinensis HOM05D006408 ORTHO05D008038 2.2e-84 316.6 207 76.3
SEGI_15088 Sequoiadendron giganteum HOM05D006408 ORTHO05D008038 2.5e-80 303.1 220 61.8
BraA08t34821Z Brassica rapa HOM05D006408 ORTHO05D008038 8.5e-76 288.1 260 62.7
Mapoly0008s0219 Marchantia polymorpha HOM05D006408 ORTHO05D008038 8.5e-76 288.1 324 47.5
Duzib093G1884 Durio zibethinus HOM05D006408 ORTHO05D008038 2.7e-74 283.1 224 64.3
vmacro20822 Vaccinium macrocarpon HOM05D006408 ORTHO05D008038 2.7e-74 283.1 167 80.8
Pp3c1_1000 Physcomitrium patens HOM05D006408 ORTHO05D008038 6.7e-73 278.5 284 51.1
CsaV3_5G019980 Cucumis sativus L. HOM05D006408 ORTHO05D008038 3.0e-65 253.1 220 60.0
COL.COLO4_06961 Corchorus olitorius HOM05D006408 ORTHO05D008038 5.7e-64 248.8 228 64.9
CsaV3_UNG224650 Cucumis sativus L. HOM05D006408 ORTHO05D008038 1.7e-60 237.3 213 59.6
SMO146G0302 Selaginella moellendorffii HOM05D006408 ORTHO05D008038 1.9e-59 233.8 205 54.1
MBI03_g28486_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 8.0e-58 228.4 246 54.9
SalBow2G2951 Salvia bowleyana HOM05D006408 ORTHO05D008038 6.7e-57 225.3 117 84.6
Dinv14691 Davidia involucrata HOM05D006408 ORTHO05D008038 9.1e-54 214.9 133 78.9
MBI03_g39652_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 8.2e-47 191.8 160 64.4
Sabra02G0061800 Salix brachista HOM05D006408 ORTHO05D008038 1.1e-38 164.9 96 79.2
Aqoxy219s001 Aquilegia oxysepala HOM05D006408 ORTHO05D008038 5.4e-38 162.5 109 73.4
CBR_g40143 Chara braunii HOM05D006408 ORTHO05D008038 4.1e-30 136.3 367 28.3
CsaV3_5G018920 Cucumis sativus L. HOM05D006408 ORTHO05D008038 4.5e-29 132.9 155 47.7
BolC5t30909H Brassica oleracea HOM05D006408 ORTHO05D008038 5.0e-28 129.4 62 95.2
AagrBONN_evm.TU.Sc2ySwM_344.4901 Anthoceros agrestis HOM05D006408 ORTHO05D008038 4.1e-22 109.8 153 43.1
Actinidia21278 Actinidia chinensis HOM05D006408 ORTHO05D008038 7.8e-21 105.5 104 54.8
MBI14_g28586_MAGBIO Magnolia biondii HOM05D007982 ORTHO05D010255 1.7e-12 77.8 43 86.0
CsaV3_UNG111870 Cucumis sativus L. HOM05D006408 ORTHO05D008038 1.4e-09 68.2 82 47.6
CsaV3_UNG115880 Cucumis sativus L. HOM05D006408 ORTHO05D008038 1.4e-09 68.2 82 47.6
A08p28900 Brassica napus HOM05D006408 ORTHO05D008038 4.0e-09 66.6 54 66.7
Actinidia21279 Actinidia chinensis HOM05D006408 ORTHO05D008038 5.8e-08 62.8 104 41.3


User provided reference genes

Program Settings