Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G21890 Arabidopsis lyrata HOM05D007322 ORTHO05D009029 4.2e-197 691.8 542 100.0
AT1G10910 Arabidopsis thaliana HOM05D007322 ORTHO05D009029 1.4e-184 650.2 539 96.1
CARHR011130 Cardamine hirsuta HOM05D007322 ORTHO05D009029 1.3e-177 627.1 539 93.9
Thhalv10007006m.g Eutrema salsugineum HOM05D007322 ORTHO05D009029 2.8e-177 625.9 539 92.8
Sp1g09630 Schrenkiella parvula HOM05D007322 ORTHO05D009029 4.8e-177 625.2 539 89.1
Carub.0001s1049 Capsella rubella HOM05D007322 ORTHO05D009029 5.3e-176 621.7 539 93.3
BcaC05g24974 Brassica carinata HOM05D007322 ORTHO05D009029 2.2e-174 616.3 538 88.3
C05p09280 Brassica napus HOM05D007322 ORTHO05D009029 2.5e-173 612.8 538 89.6
BraA06t23970Z Brassica rapa HOM05D007322 ORTHO05D009029 3.2e-173 612.5 538 87.7
A06p07690 Brassica napus HOM05D007322 ORTHO05D009029 1.6e-172 610.1 538 89.4
BcaNung04765 Brassica carinata HOM05D007322 ORTHO05D009029 2.1e-172 609.8 539 87.9
BolC5t29668H Brassica oleracea HOM05D007322 ORTHO05D009029 3.6e-172 609.0 538 89.2
Aa31LG1G3950 Aethionema arabicum HOM05D007322 ORTHO05D009029 1.9e-149 533.5 539 85.9
THA.LOC104816934 Tarenaya hassleriana HOM05D007322 ORTHO05D009029 2.8e-140 503.1 540 80.9
Atru.chr6.627 Acer truncatum HOM05D007322 ORTHO05D009029 5.4e-128 462.2 528 79.9
Dinv24285 Davidia involucrata HOM05D007322 ORTHO05D009029 1.2e-127 461.1 528 79.7
Duzib132G0092 Durio zibethinus HOM05D007322 ORTHO05D009029 9.5e-125 451.4 528 78.0
Potri.003G019000 Populus trichocarpa HOM05D007322 ORTHO05D009029 8.9e-123 444.9 528 78.8
CSS0017191 Camellia sinensis var. sinensis HOM05D007322 ORTHO05D009029 3.4e-122 443.0 538 77.3
COL.COLO4_11791 Corchorus olitorius HOM05D007322 ORTHO05D009029 1.6e-119 434.1 528 78.4
Hma1.2p1_0217F.1_g092060 Hydrangea macrophylla HOM05D007322 ORTHO05D009029 2.1e-119 433.7 528 75.6
RcHm_v2.0_Chr7g0222211 Rosa chinensis HOM05D007322 ORTHO05D009029 1.7e-118 430.6 528 78.6
Sabra03G0010600 Salix brachista HOM05D007322 ORTHO05D009029 3.9e-118 429.5 537 76.7
MD15G1423900 Malus domestica HOM05D007322 ORTHO05D009029 2.5e-117 426.8 538 75.5
Potri.001G211300 Populus trichocarpa HOM05D007322 ORTHO05D009029 2.5e-117 426.8 528 76.7
GSVIVG01022920001 Vitis vinifera HOM05D007322 ORTHO05D009029 2.5e-117 426.8 533 76.0
Cfa005519 Carpinus fangiana HOM05D007322 ORTHO05D009029 3.3e-117 426.4 528 77.7
TWI14G1121 Tripterygium wilfordii HOM05D007322 ORTHO05D009029 4.7e-116 422.5 528 77.3
Manes.07G016500 Manihot esculenta HOM05D007322 ORTHO05D009029 1.1e-115 421.4 528 75.4
Lj6g0009763 Lotus japonicus HOM05D007322 ORTHO05D009029 5.2e-115 419.1 528 75.2
CsaV3_3G043150 Cucumis sativus L. HOM05D007322 ORTHO05D009029 8.9e-115 418.3 536 75.4
Glyma.08G186600 Glycine max HOM05D007322 ORTHO05D009029 4.4e-114 416.0 526 74.9
MELO3C026617.2 Cucumis melo HOM05D007322 ORTHO05D009029 3.8e-113 412.9 540 74.6
Prupe.1G569600 Prunus persica HOM05D007322 ORTHO05D009029 1.1e-112 411.4 536 74.3
FvH4_5g29340 Fragaria vesca HOM05D007322 ORTHO05D009029 1.2e-111 407.9 528 76.7
CiPaw.05G044700 Carya illinoinensis HOM05D007322 ORTHO05D009029 7.8e-111 405.2 531 75.3
Gohir.D02G214700 Gossypium hirsutum HOM05D007322 ORTHO05D009029 7.8e-111 405.2 528 75.2
QL10p025368 Quercus lobata HOM05D007322 ORTHO05D009029 1.3e-110 404.4 628 47.1
Gorai.005G242500 Gossypium raimondii HOM05D007322 ORTHO05D009029 1.7e-110 404.1 528 75.8
Ciclev10000525m.g Citrus clementina HOM05D007322 ORTHO05D009029 2.3e-110 403.7 528 75.2
FAN18G2556 Fragaria x ananassa HOM05D007322 ORTHO05D009029 3.0e-110 403.3 528 76.7
Sed0025924 Sechium edule HOM05D007322 ORTHO05D009029 8.6e-110 401.7 528 75.8
Thecc.02G087000 Theobroma cacao HOM05D007322 ORTHO05D009029 2.5e-109 400.2 528 75.9
Gohir.A03G193600 Gossypium hirsutum HOM05D007322 ORTHO05D009029 4.3e-109 399.4 528 74.8
Migut.B00834 Erythranthe guttata HOM05D007322 ORTHO05D009029 1.2e-108 397.9 528 74.4
PGR042G2216 Punica granatum HOM05D007322 ORTHO05D009029 3.1e-107 393.3 523 74.6
HanXRQChr10g0290611 Helianthus annuus HOM05D007322 ORTHO05D009029 3.8e-105 386.3 529 71.8
Psat1g220200 Pisum sativum HOM05D007322 ORTHO05D009029 1.1e-104 384.8 525 73.9
vmacro19889 Vaccinium macrocarpon HOM05D007322 ORTHO05D009029 2.1e-103 380.6 567 70.2
Lsat_1_v5_gn_5_105200 Lactuca sativa HOM05D007322 ORTHO05D009029 3.0e-102 376.7 528 71.2
CAN.G1021.1 Capsicum annuum HOM05D007322 ORTHO05D009029 3.9e-102 376.3 529 73.3
MBI04_g34119_MAGBIO Magnolia biondii HOM05D007322 ORTHO05D009029 1.9e-101 374.0 528 73.3
Medtr2g007030 Medicago truncatula HOM05D007322 ORTHO05D009029 1.3e-100 371.3 525 68.4
Rhsim01G0008000 Rhododendron simsii HOM05D007322 ORTHO05D009029 1.6e-100 370.9 536 72.0
Phvul.006G214900 Phaseolus vulgaris HOM05D007322 ORTHO05D009029 9.0e-99 365.2 526 73.2
Cc02_g22530 Coffea canephora HOM05D007322 ORTHO05D009029 5.8e-98 362.5 528 71.4
Lalb_Chr20g0123451 Lupinus albus HOM05D007322 ORTHO05D009029 1.8e-94 350.9 529 68.8
Haze_01685 Corylus avellana HOM05D007322 ORTHO05D009029 4.8e-92 342.8 219 76.3
Lj9C305T7 Lonicera japonica HOM05D007322 ORTHO05D009029 1.1e-91 341.7 527 62.0
Aqoxy6G00206 Aquilegia oxysepala HOM05D007322 ORTHO05D009029 1.4e-91 341.3 528 71.0
TAR381G0036 Trochodendron aralioides HOM05D007322 ORTHO05D009029 1.4e-91 341.3 528 71.0
EL10Ac6g14069 Beta vulgaris HOM05D007322 ORTHO05D009029 1.7e-89 334.3 524 69.8
TPR.G2112 Trifolium pratense HOM05D007322 ORTHO05D009029 6.4e-89 332.4 525 69.5
ClCG10G013500 Citrullus lanatus HOM05D007322 ORTHO05D009029 2.7e-87 327.0 223 72.6
Nn5g28260 Nelumbo nucifera HOM05D007322 ORTHO05D009029 3.0e-86 323.6 528 69.9
HPP92_009152 Vanilla planifolia HOM05D007322 ORTHO05D009029 6.7e-86 322.4 529 62.8
DCAR_025358 Daucus carota HOM05D007322 ORTHO05D009029 4.3e-85 319.7 225 69.8
Hund12986 Selenicereus undatus HOM05D007322 ORTHO05D009029 4.5e-82 309.7 510 47.1
Eucgr.G00576 Eucalyptus grandis HOM05D007322 ORTHO05D009029 5.8e-82 309.3 437 74.4
Solyc11g040260.2 Solanum lycopersicum HOM05D007322 ORTHO05D009029 7.6e-82 308.9 529 69.6
Sopen11g018100 Solanum pennellii HOM05D007322 ORTHO05D009029 7.6e-82 308.9 529 69.6
FAN08G0261 Fragaria x ananassa HOM05D007322 ORTHO05D009029 3.5e-79 300.1 221 68.3
arahy.Tifrunner.gnm1.ann1.YY4I9I Arachis hypogaea HOM05D007322 ORTHO05D009029 1.3e-76 291.6 528 61.4
ATR0026G013 Amborella trichopoda HOM05D007322 ORTHO05D009029 1.8e-75 287.7 528 65.7
Ah.03g137110 Amaranthus hybridus HOM05D007322 ORTHO05D009029 3.1e-75 287.0 532 66.0
arahy.Tifrunner.gnm1.ann1.BYDN2S Arachis hypogaea HOM05D007322 ORTHO05D009029 2.0e-74 284.3 528 61.2
Nitab4.5_0000001g0160 Nicotiana tabacum HOM05D007322 ORTHO05D009029 2.9e-73 280.4 227 65.2
VMungo0540G0689 Vigna mungo HOM05D007322 ORTHO05D009029 2.9e-73 280.4 492 69.3
Nitab4.5_0003788g0020 Nicotiana tabacum HOM05D007322 ORTHO05D009029 2.1e-71 274.2 191 71.2
Zm00001eb162220 Zea mays HOM05D007322 ORTHO05D009029 2.3e-70 270.8 529 64.8
Os01g0559500 Oryza sativa ssp. japonica HOM05D007322 ORTHO05D009029 5.1e-70 269.6 529 64.3
SGA_v2.0_scaffold110G31316 Striga asiatica HOM05D007322 ORTHO05D009029 1.5e-69 268.1 524 66.2
Sc06g0002720 Simmondsia chinensis HOM05D007322 ORTHO05D009029 1.2e-66 258.5 488 68.0
Peaxi162Scf00152g01437 Petunia axillaris HOM05D007322 ORTHO05D009029 2.1e-63 247.7 167 73.7
MSTRG.20302 Avicennia marina HOM05D007322 ORTHO05D009029 1.5e-61 241.5 523 64.2
ECA234G4037 Erigeron canadensis HOM05D007322 ORTHO05D009029 3.1e-59 233.8 528 61.9
FAN04G1727 Fragaria x ananassa HOM05D001260 ORTHO05D002424 2.5e-40 171.0 158 70.9
Nitab4.5_0000001g0170 Nicotiana tabacum HOM05D007322 ORTHO05D009029 2.3e-38 164.5 160 67.5
CDE05G1655 Ceratophyllum demersum HOM05D007322 ORTHO05D009029 2.0e-37 161.4 161 50.9
Cpa.g.sc113.59 Carica papaya HOM05D007322 ORTHO05D009029 4.4e-37 160.2 110 70.9
Haze_01695 Corylus avellana HOM05D004517 ORTHO05D005366 1.8e-35 154.8 126 64.3
DCAR_025359 Daucus carota HOM05D007322 ORTHO05D009029 4.5e-34 150.2 152 64.5
Nitab4.5_0003788g0010 Nicotiana tabacum HOM05D007322 ORTHO05D009029 2.9e-33 147.5 151 66.2
Oeu008898.1 Olea europaea HOM05D007322 ORTHO05D009029 7.5e-29 132.9 140 64.3
Peaxi162Scf00152g01436 Petunia axillaris HOM05D007322 ORTHO05D009029 1.8e-27 128.3 135 65.2
Actinidia26149 Actinidia chinensis HOM05D007322 ORTHO05D009029 5.9e-26 123.2 121 69.4
PGSC0003DMG400008423 Solanum tuberosum HOM05D007322 ORTHO05D009029 3.5e-18 97.4 64 71.9
Peaxi162Scf00427g00004 Petunia axillaris HOM05D007322 ORTHO05D009029 5.2e-14 83.6 55 70.9
CDE05G3586 Ceratophyllum demersum HOM05D000602 ORTHO05D009029 2.4e-11 74.7 79 49.4
Cpa.g.c31488 Carica papaya HOM05D007322 ORTHO05D009029 7.0e-11 73.2 73 49.3
CDE07G1469 Ceratophyllum demersum HOM05D003056 ORTHO05D003422 1.3e-09 68.9 135 28.1
Oeu027802.1 Olea europaea HOM05D007322 ORTHO05D009029 1.2e-07 62.4 74 45.9
Ciclev10007460m.g Citrus clementina HOM05D003056 ORTHO05D003422 2.8e-07 61.2 155 25.8
COL.COLO4_29977 Corchorus olitorius HOM05D003056 ORTHO05D003422 2.8e-07 61.2 121 26.4
Gorai.011G155600 Gossypium raimondii HOM05D013428 ORTHO05D015803 2.8e-07 61.2 147 42.2
QL02p098354 Quercus lobata HOM05D003056 ORTHO05D003422 2.8e-07 61.2 155 24.5
EL10Ac8g18299 Beta vulgaris HOM05D003056 ORTHO05D003422 3.6e-07 60.8 126 27.0
DCAR_020128 Daucus carota HOM05D003056 ORTHO05D003422 3.6e-07 60.8 155 23.9
Ca_02033_v3 Cicer arietinum L. HOM05D003056 ORTHO05D003422 4.7e-07 60.5 138 24.6
Psat1g146880 Pisum sativum HOM05D003056 ORTHO05D003422 8.1e-07 59.7 152 23.0
AagrBONN_evm.TU.Sc2ySwM_368.1629 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.4e-06 58.9 151 24.5
Cpa.g.c42393 Carica papaya HOM05D007322 ORTHO05D009029 1.4e-06 58.9 40 72.5
Hma1.2p1_1303F.1_g274420 Hydrangea macrophylla HOM05D003056 ORTHO05D003422 1.8e-06 58.5 155 24.5
ATR0064G018 Amborella trichopoda HOM05D007093 ORTHO05D008910 2.3e-06 58.2 141 25.5
CSS0049173 Camellia sinensis var. sinensis HOM05D003056 ORTHO05D003422 2.3e-06 58.2 132 26.5
Duzib150G0731 Durio zibethinus HOM05D003056 ORTHO05D003422 2.3e-06 58.2 130 25.4
Eucgr.C02384 Eucalyptus grandis HOM05D003056 ORTHO05D003422 2.3e-06 58.2 132 26.5
Medtr2g036560 Medicago truncatula HOM05D003056 ORTHO05D003422 3.1e-06 57.8 143 23.1
Nn8g40410 Nelumbo nucifera HOM05D003056 ORTHO05D003422 3.1e-06 57.8 121 26.4
PSO541G6324 Papaver somniferum HOM05D003056 ORTHO05D003422 4.0e-06 57.4 155 23.9
Glyma.09G056200 Glycine max HOM05D003056 ORTHO05D003422 6.8e-06 56.6 130 25.4
Sed0009936 Sechium edule HOM05D003056 ORTHO05D003422 6.8e-06 56.6 137 24.8
THA.LOC104809984 Tarenaya hassleriana HOM05D006287 ORTHO05D008192 8.9e-06 56.2 57 42.1


User provided reference genes

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