Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G16800 Arabidopsis lyrata HOM05D004774 ORTHO05D005514 9.5e-118 426.8 205 100.0
Thhalv10028967m.g Eutrema salsugineum HOM05D004774 ORTHO05D005514 1.1e-102 376.7 205 85.4
Sp1g05530 Schrenkiella parvula HOM05D004774 ORTHO05D005514 5.6e-102 374.4 205 86.8
Aa31LG1G7840 Aethionema arabicum HOM05D004480 ORTHO05D005546 1.2e-101 373.2 204 84.3
AT1G06790 Arabidopsis thaliana HOM05D004774 ORTHO05D005514 5.8e-99 364.4 180 95.6
Carub.0001s0611 Capsella rubella HOM05D004774 ORTHO05D005514 1.7e-98 362.8 201 85.6
CARHR006490 Cardamine hirsuta HOM05D004774 ORTHO05D005514 1.5e-94 349.7 206 81.1
BraA08t35495Z Brassica rapa HOM05D004774 ORTHO05D005514 1.1e-89 333.6 205 78.5
A08p35880 Brassica napus HOM05D004774 ORTHO05D005514 7.1e-89 330.9 205 79.0
C08p02690 Brassica napus HOM05D004774 ORTHO05D005514 1.6e-88 329.7 205 79.0
BolC8t47065H Brassica oleracea HOM05D004774 ORTHO05D005514 1.6e-88 329.7 205 79.0
THA.LOC104815831 Tarenaya hassleriana HOM05D004774 ORTHO05D005514 4.3e-86 321.6 206 73.3
A09p66780 Brassica napus HOM05D004774 ORTHO05D005514 2.0e-83 312.8 205 73.7
BolC8t52628H Brassica oleracea HOM05D004774 ORTHO05D005514 2.2e-82 309.3 204 74.0
C08p51000 Brassica napus HOM05D004774 ORTHO05D005514 1.9e-81 306.2 210 71.9
BraA09t42016Z Brassica rapa HOM05D004774 ORTHO05D005514 1.0e-79 300.4 234 64.1
Thecc.01G266900 Theobroma cacao HOM05D004774 ORTHO05D005514 2.8e-77 292.4 211 63.5
BcaC07g42048 Brassica carinata HOM05D004774 ORTHO05D005514 5.3e-76 288.1 204 71.1
TWI18G0081 Tripterygium wilfordii HOM05D004774 ORTHO05D005514 1.2e-75 287.0 204 62.7
Atru.chr5.1584 Acer truncatum HOM05D004774 ORTHO05D005514 1.5e-75 286.6 194 64.4
TWI12G1255 Tripterygium wilfordii HOM05D004774 ORTHO05D005514 1.5e-75 286.6 204 62.7
Duzib138G0586 Durio zibethinus HOM05D004774 ORTHO05D005514 2.6e-75 285.8 211 62.1
Gohir.D07G215400 Gossypium hirsutum HOM05D004774 ORTHO05D005514 4.5e-75 285.0 211 60.7
GSVIVG01011075001 Vitis vinifera HOM05D004774 ORTHO05D005514 5.8e-75 284.6 194 64.4
Dinv40162 Davidia involucrata HOM05D004774 ORTHO05D005514 1.7e-74 283.1 194 63.9
GSVIVG01000730001 Vitis vinifera HOM05D004774 ORTHO05D005514 1.7e-74 283.1 194 64.4
Gohir.A07G209300 Gossypium hirsutum HOM05D004774 ORTHO05D005514 2.2e-74 282.7 211 60.7
Gorai.001G243200 Gossypium raimondii HOM05D004774 ORTHO05D005514 3.8e-74 282.0 211 60.2
Cpa.g.sc52.135 Carica papaya HOM05D004774 ORTHO05D005514 1.1e-73 280.4 202 63.4
CiPaw.06G137100 Carya illinoinensis HOM05D004774 ORTHO05D005514 1.1e-73 280.4 202 61.4
QL08p045287 Quercus lobata HOM05D004774 ORTHO05D005514 1.4e-73 280.0 199 64.3
CANSAT35G0005 Cannabis sativa HOM05D004774 ORTHO05D005514 1.2e-72 276.9 201 61.2
Sopen07g002340 Solanum pennellii HOM05D004774 ORTHO05D005514 2.1e-72 276.2 194 62.9
CAN.G1190.29 Capsicum annuum HOM05D004774 ORTHO05D005514 4.6e-72 275.0 194 62.9
Duzib211G0067 Durio zibethinus HOM05D004774 ORTHO05D005514 7.9e-72 274.2 210 59.5
Nitab4.5_0003289g0060 Nicotiana tabacum HOM05D004774 ORTHO05D005514 7.9e-72 274.2 194 61.9
Cc01_g18810 Coffea canephora HOM05D004774 ORTHO05D005514 3.0e-71 272.3 194 61.3
Dinv22475 Davidia involucrata HOM05D004774 ORTHO05D005514 3.0e-71 272.3 194 62.4
CSS0049587 Camellia sinensis var. sinensis HOM05D004774 ORTHO05D005514 1.9e-70 269.6 237 54.4
Manes.01G201400 Manihot esculenta HOM05D004774 ORTHO05D005514 2.5e-70 269.2 203 64.0
Solyc07g006240.4 Solanum lycopersicum HOM05D004774 ORTHO05D005514 2.5e-70 269.2 200 61.0
MD08G1227600 Malus domestica HOM05D004774 ORTHO05D005514 9.6e-70 267.3 203 57.6
EL10Ac3g05825 Beta vulgaris HOM05D004774 ORTHO05D005514 3.7e-69 265.4 194 62.4
Duzib211G0109 Durio zibethinus HOM05D004774 ORTHO05D005514 4.8e-69 265.0 210 58.1
Prupe.2G103200 Prunus persica HOM05D004774 ORTHO05D005514 4.8e-69 265.0 203 57.6
TAR636G0805 Trochodendron aralioides HOM05D004774 ORTHO05D005514 4.8e-69 265.0 188 61.7
Ciclev10023915m.g Citrus clementina HOM05D004774 ORTHO05D005514 1.1e-68 263.8 179 66.5
COL.COLO4_05101 Corchorus olitorius HOM05D004774 ORTHO05D005514 3.1e-68 262.3 214 56.5
Cfa005024 Carpinus fangiana HOM05D004774 ORTHO05D005514 4.0e-68 261.9 203 60.1
MSTRG.18290 Avicennia marina HOM05D004774 ORTHO05D005514 7.6e-67 257.7 204 58.3
Lj4g0014477 Lotus japonicus HOM05D004774 ORTHO05D005514 1.0e-66 257.3 204 57.8
Nn4g23666 Nelumbo nucifera HOM05D004774 ORTHO05D005514 1.3e-66 256.9 194 57.7
Potri.002G044500 Populus trichocarpa HOM05D004774 ORTHO05D005514 2.9e-66 255.8 194 59.3
Migut.D00377 Erythranthe guttata HOM05D004774 ORTHO05D005514 4.2e-65 251.9 202 58.9
Nitab4.5_0001427g0080 Nicotiana tabacum HOM05D004774 ORTHO05D005514 7.1e-65 251.1 179 62.6
AUR62002186 Chenopodium quinoa HOM05D004774 ORTHO05D005514 3.5e-64 248.8 194 59.3
ClCG09G004860 Citrullus lanatus HOM05D004774 ORTHO05D005514 6.0e-64 248.1 220 52.7
CsaV3_7G030220 Cucumis sativus L. HOM05D004774 ORTHO05D005514 3.9e-63 245.4 211 55.5
Hma1.2p1_1029F.1_g249620 Hydrangea macrophylla HOM05D004774 ORTHO05D005514 5.1e-63 245.0 228 51.8
Hma1.2p1_1029F.1_g249641 Hydrangea macrophylla HOM05D004774 ORTHO05D005514 5.1e-63 245.0 228 51.8
Sed0022653 Sechium edule HOM05D004774 ORTHO05D005514 5.1e-63 245.0 211 53.1
Lalb_Chr17g0348441 Lupinus albus HOM05D004774 ORTHO05D005514 8.7e-63 244.2 201 58.7
Ca_26554_v3 Cicer arietinum L. HOM05D004774 ORTHO05D005514 3.3e-62 242.3 196 56.1
Phvul.010G020150 Phaseolus vulgaris HOM05D004774 ORTHO05D005514 1.3e-61 240.4 217 51.6
Phvul.010G020200 Phaseolus vulgaris HOM05D004774 ORTHO05D005514 1.3e-61 240.4 217 51.6
VMungo0331G0358 Vigna mungo HOM05D002747 ORTHO05D005514 1.3e-61 240.4 217 52.1
vmacro02628 Vaccinium macrocarpon HOM05D004774 ORTHO05D005514 2.1e-61 239.6 234 52.6
PGSC0003DMG400011166 Solanum tuberosum HOM05D004774 ORTHO05D005514 1.1e-60 237.3 186 59.1
Lsat_1_v5_gn_5_176641 Lactuca sativa HOM05D004774 ORTHO05D005514 1.4e-60 236.9 195 54.4
MELO3C023634.2 Cucumis melo HOM05D004774 ORTHO05D005514 2.4e-60 236.1 220 52.3
Aqoxy7G03988 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 3.1e-60 235.7 194 55.2
Psat3g097920 Pisum sativum HOM05D004774 ORTHO05D005514 6.9e-60 234.6 195 54.9
Glyma.03G218500 Glycine max HOM05D004774 ORTHO05D005514 9.0e-60 234.2 216 50.5
Medtr8g072680 Medicago truncatula HOM05D004774 ORTHO05D005514 1.5e-59 233.4 194 54.6
PSO170G5180 Papaver somniferum HOM05D004774 ORTHO05D005514 3.4e-59 232.3 194 53.6
MBI04_g06856_MAGBIO Magnolia biondii HOM05D004774 ORTHO05D005514 5.9e-59 231.5 194 55.7
Aqoxy1G01668 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 7.6e-59 231.1 194 54.1
Glyma.19G215300 Glycine max HOM05D004774 ORTHO05D005514 2.2e-58 229.6 216 50.5
Aqoxy4G03157 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 3.8e-58 228.8 194 53.6
Sabra02G0035700 Salix brachista HOM05D004774 ORTHO05D005514 8.5e-58 227.6 180 57.8
Eucgr.B01492 Eucalyptus grandis HOM05D004774 ORTHO05D005514 1.1e-57 227.3 190 57.4
Rhsim13G0031100 Rhododendron simsii HOM05D004774 ORTHO05D005514 1.1e-57 227.3 240 50.0
AUR62015525 Chenopodium quinoa HOM05D004774 ORTHO05D005514 1.4e-57 226.9 180 60.0
PSO017G6900 Papaver somniferum HOM05D004774 ORTHO05D005514 1.4e-57 226.9 194 53.1
SGA_v2.0_scaffold138G35272 Striga asiatica HOM05D004774 ORTHO05D005514 2.5e-57 226.1 223 50.7
RcHm_v2.0_Chr5g0063451 Rosa chinensis HOM05D004774 ORTHO05D005514 2.7e-56 222.6 203 52.2
Sc04g0000740 Simmondsia chinensis HOM05D004774 ORTHO05D005514 4.6e-56 221.9 194 54.6
Peaxi162Scf00934g00135 Petunia axillaris HOM05D004774 ORTHO05D005514 7.9e-56 221.1 194 52.1
BcaC07g42538 Brassica carinata HOM05D004774 ORTHO05D005514 3.9e-55 218.8 127 83.5
DCAR_002682 Daucus carota HOM05D004774 ORTHO05D005514 1.1e-54 217.2 170 61.8
ECA247G2354 Erigeron canadensis HOM05D002220 ORTHO05D008182 1.9e-54 216.5 193 52.3
FvH4_1g22880 Fragaria vesca HOM05D004774 ORTHO05D005514 1.9e-54 216.5 204 51.5
FAN19G2773 Fragaria x ananassa HOM05D004774 ORTHO05D005514 2.2e-53 213.0 205 51.2
SMO012G0037 Selaginella moellendorffii HOM05D004774 ORTHO05D005514 8.2e-53 211.1 194 51.5
VMungo1309G2525 Vigna mungo HOM05D004774 ORTHO05D005514 1.8e-52 209.9 197 50.3
SEGI_34955 Sequoiadendron giganteum HOM05D004774 ORTHO05D005514 2.4e-52 209.5 205 46.3
Mapoly0050s0102 Marchantia polymorpha HOM05D004774 ORTHO05D005514 9.1e-52 207.6 194 45.9
unitig_0.g1128 Utricularia gibba HOM05D004774 ORTHO05D005514 9.1e-52 207.6 260 42.7
Pp3c7_17850 Physcomitrium patens HOM05D004774 ORTHO05D005514 2.6e-51 206.1 195 48.7
FAN23G2064 Fragaria x ananassa HOM05D004774 ORTHO05D005514 4.5e-51 205.3 222 47.3
HPP92_027004 Vanilla planifolia HOM05D004774 ORTHO05D005514 1.3e-50 203.8 195 50.8
HPP92_015388 Vanilla planifolia HOM05D004774 ORTHO05D005514 2.2e-50 203.0 195 50.3
AagrBONN_evm.TU.Sc2ySwM_344.4376 Anthoceros agrestis HOM05D004774 ORTHO05D005514 2.5e-49 199.5 194 46.9
Os07g0477000 Oryza sativa ssp. japonica HOM05D004774 ORTHO05D005514 7.9e-48 194.5 207 46.4
FAN26G2874 Fragaria x ananassa HOM05D004774 ORTHO05D005514 1.8e-47 193.4 180 52.2
Lj4A469T41 Lonicera japonica HOM05D004774 ORTHO05D005514 9.7e-46 187.6 135 65.9
SGA_v2.0_scaffold43G16236 Striga asiatica HOM05D004774 ORTHO05D005514 4.8e-45 185.3 172 51.2
Ca_27275_v3 Cicer arietinum L. HOM05D004774 ORTHO05D005514 3.1e-44 182.6 156 54.5
PSO339G5528 Papaver somniferum HOM05D004774 ORTHO05D005514 4.2e-41 172.2 164 50.0
Cre12.g538400 Chlamydomonas reinhardtii HOM05D004774 ORTHO05D005514 1.6e-40 170.2 206 42.7
SMO298G0040 Selaginella moellendorffii HOM05D004774 ORTHO05D005514 3.9e-39 165.6 194 45.4
SHI09938 Sapria himalayana HOM05D004774 ORTHO05D000023 6.7e-39 164.9 129 58.9
Nn1g02575 Nelumbo nucifera HOM05D004774 ORTHO05D005514 7.4e-38 161.4 122 54.9
MCO09G483 Micromonas commoda HOM05D004774 ORTHO05D005514 2.8e-37 159.5 206 39.8
PGR119G0353 Punica granatum HOM05D004774 ORTHO05D005514 4.5e-35 152.1 130 52.3
CDE07G1842 Ceratophyllum demersum HOM05D004774 ORTHO05D005514 5.5e-33 145.2 194 39.2
Aqoxy7G03987 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 2.7e-32 142.9 98 63.3
Zm00001eb319960 Zea mays HOM05D004774 ORTHO05D005514 6.1e-32 141.7 114 56.1
HanXRQChr14g0454071 Helianthus annuus HOM05D004774 ORTHO05D005514 6.3e-29 131.7 118 49.2
TPR.G27929 Trifolium pratense HOM05D004774 ORTHO05D005514 8.2e-29 131.3 104 58.7
CDE07G0321 Ceratophyllum demersum HOM05D004774 ORTHO05D005514 2.4e-28 129.8 201 35.3
arahy.Tifrunner.gnm1.ann1.KW6T12 Arachis hypogaea HOM05D004774 ORTHO05D005514 2.2e-26 123.2 96 57.3
arahy.Tifrunner.gnm1.ann1.SKV00U Arachis hypogaea HOM05D004774 ORTHO05D005514 5.0e-26 122.1 101 49.5
FAN21G2916 Fragaria x ananassa HOM05D004774 ORTHO05D005514 5.0e-26 122.1 101 56.4
ATR0665G644 Amborella trichopoda HOM05D004774 ORTHO05D005514 1.5e-25 120.6 98 55.1
FAN11G3419 Fragaria x ananassa HOM05D004774 ORTHO05D005514 1.9e-25 120.2 142 44.4
GSVIVG01021945001 Vitis vinifera HOM05D004774 ORTHO05D005514 8.0e-24 114.8 98 56.1
Haze_02362 Corylus avellana HOM05D004774 ORTHO05D005514 3.1e-20 102.8 70 67.1
GSVIVG01021951001 Vitis vinifera HOM05D004774 ORTHO05D005514 1.6e-19 100.5 101 52.5
Prupe.7G016800 Prunus persica HOM05D004774 ORTHO05D005514 1.3e-18 97.4 105 43.8
SEGI_28935 Sequoiadendron giganteum HOM05D004774 ORTHO05D005514 1.3e-18 97.4 104 40.4
TPR.G27925 Trifolium pratense HOM05D004774 ORTHO05D005514 1.3e-18 97.4 81 51.9
BolC8t46832H Brassica oleracea HOM05D004774 ORTHO05D005514 1.7e-18 97.1 73 69.9
TPR.G27610 Trifolium pratense HOM05D004774 ORTHO05D005514 2.9e-18 96.3 68 66.2
GSVIVG01000731001 Vitis vinifera HOM05D004774 ORTHO05D005514 8.6e-18 94.7 75 62.7
Haze_02361 Corylus avellana HOM05D004774 ORTHO05D005514 8.0e-16 88.2 76 52.6
FvH4_3g35340 Fragaria vesca HOM05D004774 ORTHO05D005514 3.0e-15 86.3 104 43.3
GSVIVG01004486001 Vitis vinifera HOM05D004774 ORTHO05D005514 3.0e-15 86.3 70 50.0
BolC1t02432H Brassica oleracea HOM05D004774 ORTHO05D033846 6.8e-15 85.1 41 97.6
C08p41270 Brassica napus HOM05D004774 ORTHO05D005514 1.5e-14 84.0 41 95.1
TPR.G26057 Trifolium pratense HOM05D004774 ORTHO05D005514 2.0e-14 83.6 63 58.7
PRCOL_00000420 Prasinoderma coloniale HOM05D004385 ORTHO05D005245 2.6e-14 83.2 155 31.0
GSVIVG01000732001 Vitis vinifera HOM05D004774 ORTHO05D005514 8.3e-13 78.2 69 49.3
Ah.11g042480 Amaranthus hybridus HOM05D004774 ORTHO05D005514 5.4e-12 75.5 68 48.5
A03p16490 Brassica napus HOM05D037327 ORTHO05D005514 3.8e-10 69.3 44 65.9
Lj4A469T40 Lonicera japonica HOM05D004774 ORTHO05D005514 1.1e-09 67.8 43 67.4
GSVIVG01000736001 Vitis vinifera HOM05D004774 ORTHO05D005514 1.5e-09 67.4 45 57.8
CBR_g31683 Chara braunii HOM05D004774 ORTHO05D005514 2.5e-09 66.6 119 33.6
C01p24870 Brassica napus HOM05D041306 ORTHO05D005514 8.0e-08 61.6 136 33.1
MD02G1234500 Malus domestica HOM05D004774 ORTHO05D005514 1.0e-07 61.2 40 65.0
C02p58710 Brassica napus HOM05D041306 ORTHO05D005514 2.3e-07 60.1 50 58.0
Lalb_Chr23g0275811 Lupinus albus HOM05D004774 ORTHO05D005514 1.2e-06 57.8 109 34.9
Os03g0609200 Oryza sativa ssp. japonica HOM05D004774 ORTHO05D005514 4.4e-06 55.8 45 53.3
FAN28G1675 Fragaria x ananassa HOM05D004774 ORTHO05D005514 5.7e-06 55.5 58 48.3
Aqoxy3G01073 Aquilegia oxysepala HOM05D002720 ORTHO05D002901 9.8e-06 54.7 119 31.1


User provided reference genes

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