Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G16300 Arabidopsis lyrata HOM05D003501 ORTHO05D004388 1.9e-40 168.7 84 100.0
BcaC08g42972 Brassica carinata HOM05D003501 ORTHO05D004388 4.6e-18 94.4 99 52.5
A08p05420 Brassica napus HOM05D003501 ORTHO05D004388 4.6e-18 94.4 100 52.0
A10p06220 Brassica napus HOM05D003501 ORTHO05D004388 4.6e-18 94.4 99 52.5
C06p02140 Brassica napus HOM05D003501 ORTHO05D004388 4.6e-18 94.4 99 52.5
BolC6t35344H Brassica oleracea HOM05D003501 ORTHO05D004388 4.6e-18 94.4 99 52.5
BraA10t42890Z Brassica rapa HOM05D003501 ORTHO05D004388 4.6e-18 94.4 99 52.5
Thhalv10013826m.g Eutrema salsugineum HOM05D003501 ORTHO05D004388 4.6e-18 94.4 99 52.5
BcaC07g37193 Brassica carinata HOM05D003501 ORTHO05D004388 6.0e-18 94.0 99 52.5
BolC8t47419H Brassica oleracea HOM05D003501 ORTHO05D004388 6.0e-18 94.0 99 52.5
BraA08t32548Z Brassica rapa HOM05D003501 ORTHO05D004388 6.0e-18 94.0 99 52.5
AL6G33080 Arabidopsis lyrata HOM05D003501 ORTHO05D004388 7.8e-18 93.6 99 52.5
Aa31LG2G15030 Aethionema arabicum HOM05D003501 ORTHO05D004388 1.0e-17 93.2 99 51.5
AT5G22100 Arabidopsis thaliana HOM05D003501 ORTHO05D004388 1.0e-17 93.2 99 51.5
BcaB04g17480 Brassica carinata HOM05D003501 ORTHO05D004388 1.3e-17 92.8 99 52.5
C08p05880 Brassica napus HOM05D003501 ORTHO05D004388 3.0e-17 91.7 106 49.1
CARHR191430 Cardamine hirsuta HOM05D003501 ORTHO05D004388 3.9e-17 91.3 99 50.5
Carub.0006s1974 Capsella rubella HOM05D003501 ORTHO05D004388 1.1e-16 89.7 99 50.5
BcaB07g33815 Brassica carinata HOM05D003501 ORTHO05D004388 1.5e-16 89.4 99 50.5
Sp6g23090 Schrenkiella parvula HOM05D003501 ORTHO05D004388 1.9e-16 89.0 99 49.5
THA.LOC104809596 Tarenaya hassleriana HOM05D003501 ORTHO05D004388 2.5e-16 88.6 99 48.5
Thhalv10028736m.g Eutrema salsugineum HOM05D003501 ORTHO05D004388 2.8e-15 85.1 98 50.0
Thhalv10029476m.g Eutrema salsugineum HOM05D003501 ORTHO05D004388 4.7e-15 84.3 85 52.9
Atru.chr9.1898 Acer truncatum HOM05D003501 ORTHO05D004388 8.1e-15 83.6 99 46.5
Ciclev10028663m.g Citrus clementina HOM05D003501 ORTHO05D004388 1.1e-14 83.2 99 45.5
DCAR_025365 Daucus carota HOM05D003501 ORTHO05D004388 1.1e-14 83.2 95 47.4
Eucgr.B03813 Eucalyptus grandis HOM05D003501 ORTHO05D004388 1.4e-14 82.8 98 45.9
Prupe.4G110100 Prunus persica HOM05D003501 ORTHO05D004388 1.8e-14 82.4 99 45.5
Potri.009G016000 Populus trichocarpa HOM05D003501 ORTHO05D004388 3.1e-14 81.6 99 44.4
Lj2A610G28 Lonicera japonica HOM05D003501 ORTHO05D004388 5.2e-14 80.9 95 46.3
Atru.chr3.3108 Acer truncatum HOM05D003501 ORTHO05D004388 1.5e-13 79.3 98 43.9
Hma1.2p1_0199F.1_g085800 Hydrangea macrophylla HOM05D003501 ORTHO05D004388 1.5e-13 79.3 96 46.9
Cpa.g.sc56.89 Carica papaya HOM05D003501 ORTHO05D004388 2.6e-13 78.6 99 45.5
Potri.001G216400 Populus trichocarpa HOM05D003501 ORTHO05D004388 2.6e-13 78.6 99 43.4
RcHm_v2.0_Chr5g0019871 Rosa chinensis HOM05D003501 ORTHO05D004388 2.6e-13 78.6 102 42.2
PGR102G2752 Punica granatum HOM05D003501 ORTHO05D004388 3.4e-13 78.2 99 43.4
Hund15639 Selenicereus undatus HOM05D003501 ORTHO05D004388 4.4e-13 77.8 96 44.8
CSS0017931 Camellia sinensis var. sinensis HOM05D003501 ORTHO05D004388 5.8e-13 77.4 96 44.8
MD10G1234700 Malus domestica HOM05D003501 ORTHO05D004388 5.8e-13 77.4 99 40.4
vmacro18212 Vaccinium macrocarpon HOM05D003501 ORTHO05D004388 5.8e-13 77.4 96 43.8
FvH4_3g12140 Fragaria vesca HOM05D003501 ORTHO05D004388 7.6e-13 77.0 102 41.2
FAN16G1741 Fragaria x ananassa HOM05D003501 ORTHO05D004388 7.6e-13 77.0 102 41.2
FAN21G1855 Fragaria x ananassa HOM05D003501 ORTHO05D004388 7.6e-13 77.0 102 41.2
FAN25G1502 Fragaria x ananassa HOM05D003501 ORTHO05D004388 7.6e-13 77.0 102 41.2
TWI79G0225 Tripterygium wilfordii HOM05D003501 ORTHO05D004388 7.6e-13 77.0 99 39.4
Nitab4.5_0010866g0010 Nicotiana tabacum HOM05D003501 ORTHO05D004388 9.9e-13 76.6 95 43.2
Rhsim08G0066100 Rhododendron simsii HOM05D003501 ORTHO05D004388 1.3e-12 76.3 95 44.2
CiPaw.14G095200 Carya illinoinensis HOM05D003501 ORTHO05D004388 1.7e-12 75.9 98 40.8
Sc10g0003820 Simmondsia chinensis HOM05D003501 ORTHO05D004388 1.7e-12 75.9 95 45.3
Actinidia38747 Actinidia chinensis HOM05D003501 ORTHO05D004388 2.2e-12 75.5 96 44.8
Cfa010173 Carpinus fangiana HOM05D003501 ORTHO05D004388 2.2e-12 75.5 98 40.8
Haze_23560 Corylus avellana HOM05D003501 ORTHO05D004388 2.9e-12 75.1 98 41.8
Solyc02g069340.4 Solanum lycopersicum HOM05D003501 ORTHO05D004388 2.9e-12 75.1 95 43.2
Sopen02g018490 Solanum pennellii HOM05D003501 ORTHO05D004388 2.9e-12 75.1 95 43.2
PGSC0003DMG400021209 Solanum tuberosum HOM05D003501 ORTHO05D004388 2.9e-12 75.1 95 43.2
SGA_v2.0_scaffold135G34778 Striga asiatica HOM05D003501 ORTHO05D004388 3.8e-12 74.7 96 40.6
CiPaw.08G137600 Carya illinoinensis HOM05D003501 ORTHO05D004388 4.9e-12 74.3 98 39.8
Duzib168G1975 Durio zibethinus HOM05D003501 ORTHO05D004388 4.9e-12 74.3 99 41.4
MD05G1254500 Malus domestica HOM05D003501 ORTHO05D004388 4.9e-12 74.3 108 38.9
SHI25258 Sapria himalayana HOM05D003501 ORTHO05D004388 4.9e-12 74.3 99 41.4
CDE01G0277 Ceratophyllum demersum HOM05D003501 ORTHO05D004388 8.4e-12 73.6 76 51.3
Cc07_g02990 Coffea canephora HOM05D003501 ORTHO05D004388 8.4e-12 73.6 96 40.6
ECA232G0193 Erigeron canadensis HOM05D003501 ORTHO05D004388 8.4e-12 73.6 95 43.2
Manes.04G047600 Manihot esculenta HOM05D003501 ORTHO05D004388 8.4e-12 73.6 98 41.8
Dinv15534 Davidia involucrata HOM05D003501 ORTHO05D004388 1.1e-11 73.2 96 42.7
HanXRQChr11g0321781 Helianthus annuus HOM05D003501 ORTHO05D004388 1.1e-11 73.2 95 42.1
Thecc.09G271900 Theobroma cacao HOM05D003501 ORTHO05D004388 1.1e-11 73.2 99 41.4
MSTRG.12186 Avicennia marina HOM05D003501 ORTHO05D004388 1.4e-11 72.8 96 40.6
Nn8g40776 Nelumbo nucifera HOM05D003501 ORTHO05D004388 1.4e-11 72.8 96 40.6
TAR481G0007 Trochodendron aralioides HOM05D003501 ORTHO05D004388 1.9e-11 72.4 96 40.6
HPP92_001388 Vanilla planifolia HOM05D003501 ORTHO05D004388 1.9e-11 72.4 93 43.0
Lsat_1_v5_gn_4_134160 Lactuca sativa HOM05D003501 ORTHO05D004388 2.4e-11 72.0 95 43.2
Migut.H00888 Erythranthe guttata HOM05D003501 ORTHO05D004388 3.2e-11 71.6 96 39.6
Ah.11g044900 Amaranthus hybridus HOM05D003501 ORTHO05D004388 4.1e-11 71.2 95 43.2
SalBow1G3035 Salvia bowleyana HOM05D003501 ORTHO05D004388 4.1e-11 71.2 101 42.6
Sed0017179 Sechium edule HOM05D003501 ORTHO05D004388 4.1e-11 71.2 99 37.4
CSS0035358 Camellia sinensis var. sinensis HOM05D003501 ORTHO05D004388 5.4e-11 70.9 96 41.7
CsaV3_1G043830 Cucumis sativus L. HOM05D003501 ORTHO05D004388 7.1e-11 70.5 99 37.4
MELO3C015060.2 Cucumis melo HOM05D003501 ORTHO05D004388 9.2e-11 70.1 99 36.4
EL10As4g23426 Beta vulgaris HOM05D003501 ORTHO05D004388 1.6e-10 69.3 95 41.1
Nitab4.5_0005797g0050 Nicotiana tabacum HOM05D003501 ORTHO05D004388 1.6e-10 69.3 117 35.9
SMO144G0146 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 2.1e-10 68.9 99 43.4
Gorai.006G116200 Gossypium raimondii HOM05D003501 ORTHO05D004388 2.7e-10 68.6 99 38.4
AUR62025912 Chenopodium quinoa HOM05D003501 ORTHO05D004388 3.5e-10 68.2 91 44.0
AUR62029643 Chenopodium quinoa HOM05D003501 ORTHO05D004388 3.5e-10 68.2 91 44.0
Glyma.13G179100 Glycine max HOM05D003501 ORTHO05D004388 3.5e-10 68.2 100 40.0
Gohir.A09G099800 Gossypium hirsutum HOM05D003501 ORTHO05D004388 3.5e-10 68.2 99 38.4
COL.COLO4_25421 Corchorus olitorius HOM05D003501 ORTHO05D004388 4.6e-10 67.8 99 37.4
Glyma.01G143200 Glycine max HOM05D003501 ORTHO05D004388 6.0e-10 67.4 100 40.0
ClCG03G012190 Citrullus lanatus HOM05D003501 ORTHO05D004388 1.0e-09 66.6 99 35.4
Gohir.D09G099200 Gossypium hirsutum HOM05D003501 ORTHO05D004388 1.0e-09 66.6 99 37.4
Lj2g0019396 Lotus japonicus HOM05D003501 ORTHO05D004388 1.0e-09 66.6 99 37.4
TPR.G12888 Trifolium pratense HOM05D003501 ORTHO05D004388 1.3e-09 66.2 100 39.0
Lj2g0023176 Lotus japonicus HOM05D003501 ORTHO05D004388 1.7e-09 65.9 100 36.0
MBI14_g02806_MAGBIO Magnolia biondii HOM05D003501 ORTHO05D004388 1.7e-09 65.9 94 42.6
MBI14_g41488_MAGBIO Magnolia biondii HOM05D003501 ORTHO05D004388 1.7e-09 65.9 94 42.6
VMungo0720G0165 Vigna mungo HOM05D003501 ORTHO05D004388 1.7e-09 65.9 98 36.7
ATR0097G041 Amborella trichopoda HOM05D003501 ORTHO05D004388 2.3e-09 65.5 95 38.9
Os03g0833700 Oryza sativa ssp. japonica HOM05D003501 ORTHO05D004388 3.0e-09 65.1 101 37.6
Sabra16G0127400 Salix brachista HOM05D003501 ORTHO05D004388 3.0e-09 65.1 39 74.4
QL05p062772 Quercus lobata HOM05D003501 ORTHO05D004388 3.9e-09 64.7 99 40.4
Cre09.g400367 Chlamydomonas reinhardtii HOM05D003501 ORTHO05D004388 5.1e-09 64.3 97 41.2
Medtr8g098715 Medicago truncatula HOM05D003501 ORTHO05D004388 5.1e-09 64.3 100 39.0
GSVIVG01032606001 Vitis vinifera HOM05D003501 ORTHO05D004388 5.1e-09 64.3 39 71.8
Actinidia26218 Actinidia chinensis HOM05D003501 ORTHO05D004388 6.6e-09 63.9 39 71.8
Aqoxy3G03267 Aquilegia oxysepala HOM05D003501 ORTHO05D004388 6.6e-09 63.9 95 38.9
VMungo0251G0431 Vigna mungo HOM05D003501 ORTHO05D004388 6.6e-09 63.9 98 35.7
Lalb_Chr09g0327341 Lupinus albus HOM05D003501 ORTHO05D004388 8.7e-09 63.5 100 37.0
Psat7g031640 Pisum sativum HOM05D003501 ORTHO05D004388 8.7e-09 63.5 100 38.0
Phvul.002G221600 Phaseolus vulgaris HOM05D003501 ORTHO05D004388 1.1e-08 63.2 97 36.1
Prupe.6G111200 Prunus persica HOM05D003501 ORTHO05D004388 1.1e-08 63.2 107 34.6
arahy.Tifrunner.gnm1.ann1.57UCU4 Arachis hypogaea HOM05D003501 ORTHO05D004388 4.3e-08 61.2 100 35.0
arahy.Tifrunner.gnm1.ann1.FG3FW1 Arachis hypogaea HOM05D003501 ORTHO05D004388 4.3e-08 61.2 100 35.0
CAN.G953.12 Capsicum annuum HOM05D003501 ORTHO05D004388 4.3e-08 61.2 47 59.6
Mapoly0187s0002 Marchantia polymorpha HOM05D003501 ORTHO05D004388 4.3e-08 61.2 97 39.2
CBR_g11105 Chara braunii HOM05D003501 ORTHO05D004388 1.2e-07 59.7 100 39.0
Peaxi162Scf00683g00345 Petunia axillaris HOM05D003501 ORTHO05D004388 2.8e-07 58.5 100 36.0
Pp3c15_22440 Physcomitrium patens HOM05D003501 ORTHO05D004388 2.8e-07 58.5 97 38.1
EL10Ac6g13118 Beta vulgaris HOM05D003501 ORTHO05D004388 3.6e-07 58.2 97 34.0
AagrBONN_evm.TU.Sc2ySwM_368.3338 Anthoceros agrestis HOM05D003501 ORTHO05D004388 3.1e-06 55.1 38 63.2
Zm00001eb316080 Zea mays HOM05D003501 ORTHO05D004388 4.0e-06 54.7 39 56.4
EL10As8g23847 Beta vulgaris HOM05D003501 ORTHO05D004388 5.2e-06 54.3 84 38.1
SalBow1G0615 Salvia bowleyana HOM05D003501 ORTHO05D004388 5.2e-06 54.3 101 30.7


User provided reference genes

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