Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A10p33710 Brassica napus HOM05D005074 ORTHO05D006853 0.0e+00 1419.8 717 100.0
C09p74610 Brassica napus HOM05D005074 ORTHO05D006853 0.0e+00 1372.8 717 96.5
BraA10t45403Z Brassica rapa HOM05D005074 ORTHO05D006853 0.0e+00 1350.1 687 99.1
BolC9t60195H Brassica oleracea HOM05D005074 ORTHO05D006853 0.0e+00 1307.7 677 96.9
Sp6g40630 Schrenkiella parvula HOM05D005074 ORTHO05D006853 0.0e+00 1147.9 708 83.1
BcaC06g31973 Brassica carinata HOM05D005074 ORTHO05D006853 0.0e+00 1124.0 701 83.2
Thhalv10012562m.g Eutrema salsugineum HOM05D005074 ORTHO05D006853 0.0e+00 1119.0 740 78.1
AL6G10830 Arabidopsis lyrata HOM05D005074 ORTHO05D006853 0.0e+00 1117.1 696 80.9
Carub.0006s0050 Capsella rubella HOM05D005074 ORTHO05D006853 0.0e+00 1108.2 697 80.5
CARHR211670 Cardamine hirsuta HOM05D005074 ORTHO05D006853 0.0e+00 1100.9 709 79.7
AT5G01310 Arabidopsis thaliana HOM05D005074 ORTHO05D006853 0.0e+00 1096.3 706 78.9
Aa31LG1G22940 Aethionema arabicum HOM05D005074 ORTHO05D006853 5.2e-296 1020.8 682 75.7
THA.LOC104816650 Tarenaya hassleriana HOM05D005074 ORTHO05D006853 3.0e-283 978.4 704 70.7
QL08p015889 Quercus lobata HOM05D005074 ORTHO05D006853 3.2e-245 852.0 741 59.9
TWI74G0571 Tripterygium wilfordii HOM05D005074 ORTHO05D006853 1.8e-243 846.3 756 58.1
Nn2g10923 Nelumbo nucifera HOM05D005074 ORTHO05D006853 2.5e-242 842.4 716 59.8
Potri.016G120200 Populus trichocarpa HOM05D005074 ORTHO05D006853 4.3e-242 841.6 759 59.4
Dinv13134 Davidia involucrata HOM05D005074 ORTHO05D006853 7.4e-242 840.9 732 59.8
CiPaw.10G158300 Carya illinoinensis HOM05D005074 ORTHO05D006853 3.4e-239 832.0 760 58.6
Prupe.6G280900 Prunus persica HOM05D005074 ORTHO05D006853 4.5e-239 831.6 749 58.6
RcHm_v2.0_Chr3g0462521 Rosa chinensis HOM05D005074 ORTHO05D006853 7.6e-239 830.9 736 59.6
arahy.Tifrunner.gnm1.ann1.N71AR0 Arachis hypogaea HOM05D005074 ORTHO05D006853 1.9e-237 826.2 754 57.7
Duzib128G0037 Durio zibethinus HOM05D005074 ORTHO05D006853 4.2e-237 825.1 708 60.5
SGA_v2.0_scaffold85G26714 Striga asiatica HOM05D005074 ORTHO05D006853 5.5e-237 824.7 702 60.1
MD04G1160300 Malus domestica HOM05D005074 ORTHO05D006853 7.1e-237 824.3 745 59.1
CSS0046053 Camellia sinensis var. sinensis HOM05D005074 ORTHO05D006853 9.3e-237 823.9 757 58.3
PGR031G0257 Punica granatum HOM05D005074 ORTHO05D006853 9.3e-237 823.9 737 58.3
Sabra16G0116100 Salix brachista HOM05D005074 ORTHO05D006853 1.6e-236 823.2 759 58.2
TAR633G0154 Trochodendron aralioides HOM05D005074 ORTHO05D006853 2.1e-236 822.8 733 59.1
CSS0047541 Camellia sinensis var. sinensis HOM05D005074 ORTHO05D006853 4.6e-236 821.6 757 58.1
CANSAT35G1267 Cannabis sativa HOM05D005074 ORTHO05D006853 7.9e-236 820.8 751 57.5
PSO384G2802 Papaver somniferum HOM05D005074 ORTHO05D006853 1.3e-235 820.1 713 59.5
Ciclev10011130m.g Citrus clementina HOM05D005074 ORTHO05D006853 1.8e-235 819.7 742 57.5
Glyma.01G117800 Glycine max HOM05D005074 ORTHO05D006853 3.9e-235 818.5 754 57.4
FvH4_6g11090 Fragaria vesca HOM05D005074 ORTHO05D006853 8.7e-235 817.4 754 57.8
GSVIVG01003941001 Vitis vinifera HOM05D005074 ORTHO05D006853 1.1e-234 817.0 683 60.2
Lj2C71T3 Lonicera japonica HOM05D005074 ORTHO05D006853 1.9e-234 816.2 703 60.9
Peaxi162Scf01132g00134 Petunia axillaris HOM05D005074 ORTHO05D006853 1.9e-234 816.2 704 59.9
PGSC0003DMG400006257 Solanum tuberosum HOM05D005074 ORTHO05D006853 1.9e-234 816.2 722 59.0
Hma1.2p1_0501F.1_g167650 Hydrangea macrophylla HOM05D005074 ORTHO05D006853 3.3e-234 815.5 695 60.4
PSO339G4313 Papaver somniferum HOM05D005074 ORTHO05D006853 4.3e-234 815.1 715 59.9
HanXRQChr12g0383191 Helianthus annuus HOM05D005074 ORTHO05D006853 5.7e-234 814.7 691 61.1
Nitab4.5_0012964g0020 Nicotiana tabacum HOM05D005074 ORTHO05D006853 1.3e-233 813.5 721 58.7
FAN02G3586 Fragaria x ananassa HOM05D005074 ORTHO05D006853 2.8e-233 812.4 759 57.3
Nitab4.5_0000195g0210 Nicotiana tabacum HOM05D005074 ORTHO05D006853 6.3e-233 811.2 729 58.2
Gorai.012G116900 Gossypium raimondii HOM05D005074 ORTHO05D006853 8.2e-233 810.8 704 58.8
Gohir.D04G133000 Gossypium hirsutum HOM05D005074 ORTHO05D006853 1.1e-232 810.4 715 58.3
Actinidia29087 Actinidia chinensis HOM05D005074 ORTHO05D006853 2.4e-232 809.3 728 58.5
Haze_21033 Corylus avellana HOM05D005074 ORTHO05D006853 3.1e-232 808.9 742 58.0
FAN05G5223 Fragaria x ananassa HOM05D005074 ORTHO05D006853 5.3e-232 808.1 764 57.2
Gohir.A04G093700 Gossypium hirsutum HOM05D005074 ORTHO05D006853 6.9e-232 807.7 715 58.3
CAN.G41.5 Capsicum annuum HOM05D005074 ORTHO05D006853 9.0e-232 807.4 708 58.5
Rhsim05G0219800 Rhododendron simsii HOM05D005074 ORTHO05D006853 1.5e-231 806.6 740 58.1
Aqoxy4G02460 Aquilegia oxysepala HOM05D005074 ORTHO05D006853 2.0e-231 806.2 807 54.4
Sopen09g001080 Solanum pennellii HOM05D005074 ORTHO05D006853 2.0e-231 806.2 723 58.6
Lalb_Chr07g0191391 Lupinus albus HOM05D005074 ORTHO05D006853 2.6e-231 805.8 750 56.9
VMungo0331G1905 Vigna mungo HOM05D005074 ORTHO05D006853 2.6e-231 805.8 750 57.6
Solyc09g005100.4 Solanum lycopersicum HOM05D005074 ORTHO05D006853 3.4e-231 805.4 723 58.5
FAN14G3962 Fragaria x ananassa HOM05D005074 ORTHO05D006853 5.9e-231 804.7 763 56.9
ClCG10G022350 Citrullus lanatus HOM05D005074 ORTHO05D006853 2.2e-230 802.7 744 56.6
Cfa017171 Carpinus fangiana HOM05D005074 ORTHO05D006853 3.8e-230 802.0 741 57.2
MELO3C009144.2 Cucumis melo HOM05D005074 ORTHO05D006853 1.4e-229 800.0 746 56.8
CsaV3_3G033540 Cucumis sativus L. HOM05D005074 ORTHO05D006853 1.4e-229 800.0 743 56.7
Medtr1g024820 Medicago truncatula HOM05D005074 ORTHO05D006853 2.5e-229 799.3 742 56.1
Sed0022379 Sechium edule HOM05D005074 ORTHO05D006853 9.4e-229 797.3 740 56.2
AUR62030501 Chenopodium quinoa HOM05D005074 ORTHO05D006853 1.6e-228 796.6 723 57.8
Psat6g003720 Pisum sativum HOM05D005074 ORTHO05D006853 1.0e-227 793.9 750 56.1
MSTRG.18991 Avicennia marina HOM05D005074 ORTHO05D006853 1.4e-227 793.5 738 56.6
Phvul.010G073200 Phaseolus vulgaris HOM05D005074 ORTHO05D006853 3.9e-227 792.0 751 55.9
TPR.G34365 Trifolium pratense HOM05D005074 ORTHO05D006853 5.1e-227 791.6 752 55.2
Ca_13410_v3 Cicer arietinum L. HOM05D005074 ORTHO05D006853 8.8e-227 790.8 746 55.5
Ca_13419_v3 Cicer arietinum L. HOM05D005074 ORTHO05D006853 8.8e-227 790.8 746 55.5
Cc06_g01060 Coffea canephora HOM05D005074 ORTHO05D006853 1.5e-226 790.0 785 53.4
EL10Ac5g12524 Beta vulgaris HOM05D005074 ORTHO05D006853 1.3e-225 786.9 763 55.2
Ah.02g115540 Amaranthus hybridus HOM05D005074 ORTHO05D006853 4.8e-225 785.0 755 55.8
Lj5g0028092 Lotus japonicus HOM05D005074 ORTHO05D006853 1.4e-224 783.5 760 56.2
DCAR_006624 Daucus carota HOM05D005074 ORTHO05D006853 4.5e-223 778.5 771 54.1
Migut.J00131 Erythranthe guttata HOM05D005074 ORTHO05D006853 5.9e-223 778.1 681 58.3
MBI03_g18944_MAGBIO Magnolia biondii HOM05D005074 ORTHO05D006853 5.9e-223 778.1 772 54.5
SalBow5G0276 Salvia bowleyana HOM05D005074 ORTHO05D006853 1.8e-219 766.5 677 58.5
SalBow5G3519 Salvia bowleyana HOM05D005074 ORTHO05D006853 2.3e-219 766.1 677 58.2
Hund10968 Selenicereus undatus HOM05D005074 ORTHO05D006853 7.0e-216 754.6 713 55.7
Zm00001eb013510 Zea mays HOM05D005074 ORTHO05D006853 1.6e-212 743.4 749 54.9
unitig_27.g24848 Utricularia gibba HOM05D005074 ORTHO05D006853 2.0e-210 736.5 702 54.3
Lsat_1_v5_gn_8_100780 Lactuca sativa HOM05D005074 ORTHO05D006853 5.7e-210 734.9 709 55.9
Thecc.05G011500 Theobroma cacao HOM05D005074 ORTHO05D006853 5.7e-210 734.9 984 44.3
AUR62030792 Chenopodium quinoa HOM05D005074 ORTHO05D006853 8.2e-209 731.1 728 54.8
COL.COLO4_14500 Corchorus olitorius HOM05D005074 ORTHO05D006853 2.1e-204 716.5 936 44.9
ATR0716G066 Amborella trichopoda HOM05D005074 ORTHO05D006853 8.5e-198 694.5 862 46.3
Atru.chr8.2282 Acer truncatum HOM05D005074 ORTHO05D006853 2.0e-194 683.3 654 55.7
Eucgr.A00552 Eucalyptus grandis HOM05D005074 ORTHO05D006853 4.8e-193 678.7 638 56.7
HPP92_025102 Vanilla planifolia HOM05D005074 ORTHO05D006853 6.3e-193 678.3 676 53.4
vmacro20302 Vaccinium macrocarpon HOM05D005074 ORTHO05D006853 1.2e-191 674.1 724 54.0
Manes.09G106200 Manihot esculenta HOM05D005074 ORTHO05D006853 1.9e-189 666.8 602 56.3
CDE08G0259 Ceratophyllum demersum HOM05D005074 ORTHO05D006853 5.9e-183 645.2 763 48.5
SMO119G0484 Selaginella moellendorffii HOM05D005074 ORTHO05D006853 3.9e-174 615.9 682 48.5
ECA236G3605 Erigeron canadensis HOM05D005074 ORTHO05D006853 4.9e-169 599.0 568 56.5
Mapoly0120s0055 Marchantia polymorpha HOM05D005074 ORTHO05D006853 5.4e-160 568.9 739 44.7
Hma1.2p1_0501F.1_g167660 Hydrangea macrophylla HOM05D005074 ORTHO05D006853 2.7e-159 566.6 456 64.3
Pp3c11_18160 Physcomitrium patens HOM05D005074 ORTHO05D006853 1.0e-158 564.7 788 43.3
Sc22g0002590 Simmondsia chinensis HOM05D005074 ORTHO05D006853 1.3e-158 564.3 519 57.2
FAN09G4669 Fragaria x ananassa HOM05D005074 ORTHO05D006853 1.2e-151 541.2 602 51.5
Cpa.g.sc120.24 Carica papaya HOM05D005074 ORTHO05D006853 7.8e-143 511.9 715 42.1
Aa31LG1G22950 Aethionema arabicum HOM05D005074 ORTHO05D006853 2.0e-138 497.3 450 58.0
Aa31LG1G22960 Aethionema arabicum HOM05D005074 ORTHO05D006853 1.3e-124 451.4 489 52.4
Os03g0293400 Oryza sativa ssp. japonica HOM05D005074 ORTHO05D006853 2.8e-124 450.3 388 60.1
Aa31LG8G1910 Aethionema arabicum HOM05D005074 ORTHO05D006853 6.9e-123 445.7 509 50.3
arahy.Tifrunner.gnm1.ann1.W8IS2K Arachis hypogaea HOM05D005074 ORTHO05D006853 1.5e-117 427.9 385 57.1
AagrBONN_evm.TU.Sc2ySwM_362.194 Anthoceros agrestis HOM05D005074 ORTHO05D006853 5.5e-104 382.9 447 46.8
SHI12858 Sapria himalayana HOM05D005074 ORTHO05D006853 5.7e-85 319.7 296 57.4
Oeu033574.2 Olea europaea HOM05D005074 ORTHO05D006853 1.8e-83 314.7 670 34.5
BcaC06g31962 Brassica carinata HOM05D005074 ORTHO05D006853 2.2e-81 307.8 163 91.4
FAN09G1779 Fragaria x ananassa HOM05D005074 ORTHO05D006853 2.9e-81 307.4 327 54.4
FAN09G0145 Fragaria x ananassa HOM05D005074 ORTHO05D006853 1.0e-73 282.3 294 55.1
FAN09G0802 Fragaria x ananassa HOM05D005074 ORTHO05D006853 5.0e-73 280.0 195 72.3
CBR_g45475 Chara braunii HOM05D005074 ORTHO05D006853 7.2e-72 276.2 1013 25.1
Aa31sc2673G10 Aethionema arabicum HOM05D005074 ORTHO05D006853 2.9e-65 254.2 265 50.6
Oeu063389.1 Olea europaea HOM05D005074 ORTHO05D006853 1.5e-64 251.9 189 63.0
Cre06.g297904 Chlamydomonas reinhardtii HOM05D005074 ORTHO05D006853 2.4e-59 234.6 665 29.9
RcHm_v2.0_Chr3g0462501 Rosa chinensis HOM05D005074 ORTHO05D006853 2.0e-58 231.5 261 49.8
MD05G1095500 Malus domestica HOM05D005074 ORTHO05D006853 1.9e-51 208.4 160 58.8
MD12G1172800 Malus domestica HOM05D005074 ORTHO05D006853 3.3e-48 197.6 232 48.7
Duzib093G1335 Durio zibethinus HOM05D005074 ORTHO05D006853 2.1e-47 194.9 351 38.5
AagrBONN_evm.TU.Sc2ySwM_344.4419 Anthoceros agrestis HOM05D005074 ORTHO05D006853 5.2e-46 190.3 157 58.6
Glyma.U000401 Glycine max HOM05D005074 ORTHO05D006853 1.8e-38 165.2 124 62.1
Ca_06765_v3 Cicer arietinum L. HOM05D005074 ORTHO05D006853 3.4e-29 134.4 214 37.9
Glyma.U000501 Glycine max HOM05D005074 ORTHO05D006853 4.9e-28 130.6 97 67.0
Aa31LG1G22970 Aethionema arabicum HOM05D005074 ORTHO05D006853 4.2e-27 127.5 128 54.7
Rhsim05G0219600 Rhododendron simsii HOM05D005074 ORTHO05D006853 1.2e-26 125.9 255 38.8
Aa31sc1955G20 Aethionema arabicum HOM05D005074 ORTHO05D006853 5.1e-25 120.6 125 53.6
MCO14G225 Micromonas commoda HOM05D005074 ORTHO05D006853 9.0e-22 109.8 189 34.4
Medtr1g024155 Medicago truncatula HOM05D005074 ORTHO05D006853 2.7e-18 98.2 95 58.9
Aa31LG1G19680 Aethionema arabicum HOM05D005074 ORTHO05D006853 8.7e-17 93.2 88 60.2
Medtr8g092520 Medicago truncatula HOM05D005074 ORTHO05D006853 4.8e-15 87.4 64 65.6
Aa31LG1G19700 Aethionema arabicum HOM05D005074 ORTHO05D023363 6.2e-15 87.0 63 68.3
Pp3c2_27000 Physcomitrium patens HOM05D005074 ORTHO05D034455 1.6e-10 72.4 170 27.1
Cre02.g079150 Chlamydomonas reinhardtii HOM05D005074 ORTHO05D034455 6.0e-10 70.5 159 25.8
PSO675G8941 Papaver somniferum HOM05D005074 ORTHO05D006853 7.9e-10 70.1 118 31.4
Cre05.g239450 Chlamydomonas reinhardtii HOM05D005074 ORTHO05D034455 8.7e-09 66.6 167 31.1
Cfa025975 Carpinus fangiana HOM05D005074 ORTHO05D006853 2.5e-08 65.1 193 29.0
Aa31sc1955G10 Aethionema arabicum HOM05D005074 ORTHO05D023363 1.3e-07 62.8 43 67.4
Aa31sc2119G10 Aethionema arabicum HOM05D005074 ORTHO05D023363 1.3e-07 62.8 43 67.4
Hund10966 Selenicereus undatus HOM05D005074 ORTHO05D023363 1.1e-06 59.7 52 53.8


User provided reference genes

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