Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A10p30680 Brassica napus HOM05D005539 ORTHO05D006644 0.0e+00 1590.9 813 100.0
C09p71160 Brassica napus HOM05D005539 ORTHO05D006644 0.0e+00 1550.4 814 97.9
BolC9t59878H Brassica oleracea HOM05D005539 ORTHO05D006644 0.0e+00 1542.7 840 95.2
Thhalv10012715m.g Eutrema salsugineum HOM05D005539 ORTHO05D006644 0.0e+00 1437.9 813 88.8
Sp6g37210 Schrenkiella parvula HOM05D005539 ORTHO05D006644 0.0e+00 1437.2 813 89.9
AL6G15570 Arabidopsis lyrata HOM05D005539 ORTHO05D006644 0.0e+00 1425.2 813 88.6
Carub.0006s0457 Capsella rubella HOM05D005539 ORTHO05D006644 0.0e+00 1421.0 813 88.6
AT5G05680 Arabidopsis thaliana HOM05D005539 ORTHO05D006644 0.0e+00 1415.2 813 88.3
CARHR207600 Cardamine hirsuta HOM05D005539 ORTHO05D006644 0.0e+00 1388.6 814 87.0
BcaB05g21701 Brassica carinata HOM05D005539 ORTHO05D006644 0.0e+00 1328.5 812 84.7
BcaC06g32273 Brassica carinata HOM05D005539 ORTHO05D006644 0.0e+00 1305.4 778 88.8
Aa31LG11G6690 Aethionema arabicum HOM05D005539 ORTHO05D006644 0.0e+00 1189.9 813 76.3
BcaC06g32275 Brassica carinata HOM05D005539 ORTHO05D006644 0.0e+00 1173.3 627 96.5
THA.LOC104826852 Tarenaya hassleriana HOM05D005539 ORTHO05D006644 0.0e+00 1172.1 813 73.4
BraA10t45109Z Brassica rapa HOM05D005539 ORTHO05D006644 2.6e-307 1058.5 549 100.0
COL.COLO4_25704 Corchorus olitorius HOM05D005539 ORTHO05D006644 1.3e-303 1046.2 814 66.2
Gohir.A10G235300 Gossypium hirsutum HOM05D005539 ORTHO05D006644 7.2e-302 1040.4 817 64.9
Gohir.D10G247700 Gossypium hirsutum HOM05D005539 ORTHO05D006644 1.2e-301 1039.6 817 65.0
Gorai.011G286200 Gossypium raimondii HOM05D005539 ORTHO05D006644 3.9e-300 1034.6 817 64.9
Thecc.10G020000 Theobroma cacao HOM05D005539 ORTHO05D006644 1.7e-298 1029.2 814 65.4
Duzib106G1755 Durio zibethinus HOM05D005539 ORTHO05D006644 1.4e-297 1026.2 814 64.9
GSVIVG01032835001 Vitis vinifera HOM05D005539 ORTHO05D006644 1.5e-294 1016.1 816 63.4
Cpa.g.sc19.181 Carica papaya HOM05D005539 ORTHO05D006644 5.2e-292 1007.7 819 62.8
Manes.10G013600 Manihot esculenta HOM05D005539 ORTHO05D006644 3.3e-291 1005.0 811 63.4
Potri.010G189700 Populus trichocarpa HOM05D005539 ORTHO05D006644 2.0e-288 995.7 813 62.9
Sabra10G0146300 Salix brachista HOM05D005539 ORTHO05D006644 4.2e-286 988.0 835 60.8
Ciclev10030725m.g Citrus clementina HOM05D005539 ORTHO05D006644 9.4e-286 986.9 812 62.4
Atru.chr12.24 Acer truncatum HOM05D005539 ORTHO05D006644 4.0e-284 981.5 815 62.6
RcHm_v2.0_Chr1g0370081 Rosa chinensis HOM05D005539 ORTHO05D006644 1.2e-283 979.9 813 62.6
CiPaw.01G297900 Carya illinoinensis HOM05D005539 ORTHO05D006644 2.0e-283 979.2 810 61.7
FvH4_7g24380 Fragaria vesca HOM05D005539 ORTHO05D006644 2.2e-282 975.7 817 62.2
Potri.008G067600 Populus trichocarpa HOM05D005539 ORTHO05D006644 1.6e-280 969.5 813 60.9
Prupe.2G249200 Prunus persica HOM05D005539 ORTHO05D006644 4.5e-280 968.0 814 62.0
FAN01G2659 Fragaria x ananassa HOM05D005539 ORTHO05D006644 1.0e-279 966.8 813 61.9
FAN10G0075 Fragaria x ananassa HOM05D005539 ORTHO05D006644 2.9e-279 965.3 813 61.7
Hma1.2p1_0703F.1_g206530 Hydrangea macrophylla HOM05D005539 ORTHO05D006644 1.9e-278 962.6 823 60.4
MD01G1152200 Malus domestica HOM05D005539 ORTHO05D006644 9.5e-278 960.3 813 61.4
CANSAT56G2522 Cannabis sativa HOM05D005539 ORTHO05D006644 1.4e-273 946.4 812 61.5
FAN03G1336 Fragaria x ananassa HOM05D005539 ORTHO05D006644 1.8e-273 946.0 813 60.8
TAR369G0030 Trochodendron aralioides HOM05D005539 ORTHO05D006644 9.2e-273 943.7 817 59.9
Eucgr.J00217 Eucalyptus grandis HOM05D005539 ORTHO05D006644 2.0e-272 942.6 820 59.5
Glyma.11G229000 Glycine max HOM05D005539 ORTHO05D006644 1.1e-270 936.8 806 59.8
Phvul.001G242300 Phaseolus vulgaris HOM05D005539 ORTHO05D006644 3.0e-268 928.7 805 58.5
PGR044G2440 Punica granatum HOM05D005539 ORTHO05D006644 6.8e-268 927.5 819 58.2
VMungo1383G3500 Vigna mungo HOM05D005539 ORTHO05D006644 1.5e-267 926.4 805 58.5
Nn2g13702 Nelumbo nucifera HOM05D005539 ORTHO05D006644 2.4e-265 919.1 814 59.3
Rhsim09G0176800 Rhododendron simsii HOM05D005539 ORTHO05D006644 5.4e-265 917.9 826 59.1
CsaV3_5G010080 Cucumis sativus L. HOM05D005539 ORTHO05D006644 4.6e-264 914.8 820 57.8
MELO3C025184.2 Cucumis melo HOM05D005539 ORTHO05D006644 7.8e-264 914.1 821 58.6
arahy.Tifrunner.gnm1.ann1.W7ADHZ Arachis hypogaea HOM05D005539 ORTHO05D006644 1.3e-263 913.3 806 58.2
FAN06G4384 Fragaria x ananassa HOM05D005539 ORTHO05D006644 1.7e-263 912.9 817 59.4
arahy.Tifrunner.gnm1.ann1.4ME2IF Arachis hypogaea HOM05D005539 ORTHO05D006644 3.9e-263 911.8 806 58.3
AUR62012239 Chenopodium quinoa HOM05D005539 ORTHO05D006644 7.3e-262 907.5 825 58.3
Lalb_Chr15g0084151 Lupinus albus HOM05D005539 ORTHO05D006644 1.2e-261 906.7 812 57.8
Haze_17219 Corylus avellana HOM05D005539 ORTHO05D006644 2.8e-261 905.6 877 56.6
Sed0009998 Sechium edule HOM05D005539 ORTHO05D006644 6.2e-261 904.4 816 57.4
Lsat_1_v5_gn_2_122921 Lactuca sativa HOM05D005539 ORTHO05D006644 8.0e-261 904.0 834 57.0
Lj8A68G37 Lonicera japonica HOM05D005539 ORTHO05D006644 1.1e-260 903.7 816 58.2
Lj6g0015972 Lotus japonicus HOM05D005539 ORTHO05D006644 5.2e-260 901.4 803 57.4
Oeu064386.1 Olea europaea HOM05D005539 ORTHO05D006644 7.5e-259 897.5 809 58.1
EL10Ac2g04818 Beta vulgaris HOM05D005539 ORTHO05D006644 9.8e-259 897.1 826 56.9
Actinidia29697 Actinidia chinensis HOM05D005539 ORTHO05D006644 4.9e-258 894.8 736 61.8
AUR62022871 Chenopodium quinoa HOM05D005539 ORTHO05D006644 6.4e-258 894.4 835 57.7
Peaxi162Scf00825g00123 Petunia axillaris HOM05D005539 ORTHO05D006644 4.1e-257 891.7 799 57.9
Ca_15119_v3 Cicer arietinum L. HOM05D005539 ORTHO05D006644 7.0e-257 891.0 803 57.7
Medtr3g070390 Medicago truncatula HOM05D005539 ORTHO05D006644 7.0e-257 891.0 803 57.9
Psat5g128120 Pisum sativum HOM05D005539 ORTHO05D006644 1.3e-255 886.7 805 58.1
MSTRG.8325 Avicennia marina HOM05D005539 ORTHO05D006644 8.6e-255 884.0 815 57.3
ECA238G2434 Erigeron canadensis HOM05D005539 ORTHO05D006644 1.5e-254 883.2 834 55.3
DCAR_011807 Daucus carota HOM05D005539 ORTHO05D006644 1.9e-254 882.9 811 57.5
Hund15944 Selenicereus undatus HOM05D005539 ORTHO05D006644 7.3e-254 880.9 802 57.4
Migut.F01380 Erythranthe guttata HOM05D005539 ORTHO05D006644 4.7e-253 878.2 817 56.4
HanXRQChr14g0459831 Helianthus annuus HOM05D005539 ORTHO05D006644 7.5e-251 870.9 830 55.5
Sopen11g010350 Solanum pennellii HOM05D005539 ORTHO05D006644 4.9e-250 868.2 814 56.3
Actinidia33928 Actinidia chinensis HOM05D005539 ORTHO05D006644 6.4e-250 867.8 819 55.8
vmacro10050 Vaccinium macrocarpon HOM05D005539 ORTHO05D006644 5.4e-249 864.8 810 57.7
Aqoxy4G02586 Aquilegia oxysepala HOM05D005539 ORTHO05D006644 3.5e-248 862.1 791 56.3
Sc14g0005370 Simmondsia chinensis HOM05D005539 ORTHO05D006644 5.1e-247 858.2 787 56.7
CAN.G1694.1 Capsicum annuum HOM05D005539 ORTHO05D006644 2.5e-246 855.9 820 55.5
Cc02_g06620 Coffea canephora HOM05D005539 ORTHO05D006644 1.6e-245 853.2 822 55.2
PSO339G2908 Papaver somniferum HOM05D005539 ORTHO05D006644 5.2e-244 848.2 821 55.2
ClCG07G004120 Citrullus lanatus HOM05D005539 ORTHO05D006644 1.5e-243 846.7 814 54.7
Dinv17988 Davidia involucrata HOM05D005539 ORTHO05D006644 8.7e-239 830.9 795 56.5
PSO384G3240 Papaver somniferum HOM05D005539 ORTHO05D006644 2.5e-238 829.3 823 54.2
CSS0043358 Camellia sinensis var. sinensis HOM05D005539 ORTHO05D006644 6.0e-232 808.1 823 54.1
vmacro10051 Vaccinium macrocarpon HOM05D005539 ORTHO05D006644 5.4e-225 785.0 862 52.3
Sc14g0005420 Simmondsia chinensis HOM05D005539 ORTHO05D006644 1.2e-224 783.9 752 55.3
SGA_v2.0_scaffold76G25107 Striga asiatica HOM05D005539 ORTHO05D006644 1.3e-221 773.9 876 48.1
Cfa001325 Carpinus fangiana HOM05D005539 ORTHO05D006644 6.2e-221 771.5 617 64.5
FAN06G2075 Fragaria x ananassa HOM05D005539 ORTHO05D006644 2.8e-213 746.1 625 62.7
FAN10G4325 Fragaria x ananassa HOM05D005539 ORTHO05D006644 2.8e-213 746.1 625 62.7
Ah.04g164520 Amaranthus hybridus HOM05D005539 ORTHO05D006644 4.8e-213 745.3 824 51.1
TPR.G2533 Trifolium pratense HOM05D005539 ORTHO05D006644 2.4e-204 716.5 622 59.8
FAN06G5029 Fragaria x ananassa HOM05D005539 ORTHO05D006644 5.3e-204 715.3 626 60.7
Hma1.2p1_0703F.1_g206540 Hydrangea macrophylla HOM05D005539 ORTHO05D006644 5.9e-195 685.3 595 60.3
ATR0193G007 Amborella trichopoda HOM05D005539 ORTHO05D006644 6.7e-183 645.2 719 48.8
Os04g0608400 Oryza sativa ssp. japonica HOM05D005539 ORTHO05D006644 3.1e-180 636.3 769 45.9
Zm00001eb430560 Zea mays HOM05D005539 ORTHO05D006644 5.9e-171 605.5 729 46.0
HPP92_019887 Vanilla planifolia HOM05D005539 ORTHO05D006644 2.2e-170 603.6 812 41.7
unitig_0.g238 Utricularia gibba HOM05D005539 ORTHO05D006644 2.9e-162 576.6 802 42.9
Dinv17987 Davidia involucrata HOM05D005539 ORTHO05D006644 4.4e-142 509.6 403 64.3
SHI03446 Sapria himalayana HOM05D005539 ORTHO05D006644 1.4e-140 504.6 459 55.6
CDE04G1676 Ceratophyllum demersum HOM05D005539 ORTHO05D006644 9.9e-134 481.9 554 47.3
Solyc11g020190.1 Solanum lycopersicum HOM05D005539 ORTHO05D006644 6.0e-131 472.6 502 52.8
Dinv17986 Davidia involucrata HOM05D005539 ORTHO05D006644 5.4e-124 449.5 398 60.6
QL08p063092 Quercus lobata HOM05D005539 ORTHO05D006644 1.6e-123 448.0 331 64.0
Mapoly0043s0044 Marchantia polymorpha HOM05D005539 ORTHO05D006644 1.8e-119 434.5 783 37.4
Nitab4.5_0001171g0020 Nicotiana tabacum HOM05D005539 ORTHO05D006644 1.6e-112 411.4 344 60.2
Nitab4.5_0003886g0070 Nicotiana tabacum HOM05D005539 ORTHO05D006644 1.4e-111 408.3 341 60.1
AagrBONN_evm.TU.Sc2ySwM_362.2924 Anthoceros agrestis HOM05D005539 ORTHO05D006644 1.2e-110 405.2 774 36.4
Solyc11g008120.3 Solanum lycopersicum HOM05D005539 ORTHO05D006644 2.1e-104 384.4 402 52.7
Pp3c6_24520 Physcomitrium patens HOM05D005539 ORTHO05D006644 1.7e-101 374.8 678 36.0
HanXRQChr13g0392111 Helianthus annuus HOM05D005539 ORTHO05D006644 2.2e-88 331.3 484 43.8
SEGI_35888 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 1.0e-85 322.4 474 41.4
Glyma.18G028233 Glycine max HOM05D005539 ORTHO05D006644 8.5e-85 319.3 277 58.1
Glyma.18G028167 Glycine max HOM05D005539 ORTHO05D006644 2.1e-75 288.1 241 59.3
CBR_g22013 Chara braunii HOM05D005539 ORTHO05D006644 3.6e-75 287.3 900 29.1
Nitab4.5_0000395g0010 Nicotiana tabacum HOM05D005539 ORTHO05D006644 1.1e-68 265.8 296 50.7
SEGI_33727 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 1.8e-66 258.5 333 44.4
Solyc11g008110.1 Solanum lycopersicum HOM05D005539 ORTHO05D006644 2.0e-65 255.0 184 63.6
vmacro22159 Vaccinium macrocarpon HOM05D005539 ORTHO05D006644 7.0e-63 246.5 382 42.4
SEGI_27471 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 8.5e-61 239.6 309 45.3
FAN06G2580 Fragaria x ananassa HOM05D005539 ORTHO05D006644 1.4e-58 232.3 191 60.2
CDE04G3215 Ceratophyllum demersum HOM05D005539 ORTHO05D006644 2.1e-51 208.4 230 47.0
Solyc11g020180.3 Solanum lycopersicum HOM05D005539 ORTHO05D006644 2.7e-51 208.0 145 66.2
MD07G1220900 Malus domestica HOM05D005539 ORTHO05D006644 6.1e-43 180.3 181 53.6
Sabra08G0049700 Salix brachista HOM05D005539 ORTHO05D006644 8.0e-43 179.9 232 48.7
Hma1.2p1_0703F.1_g206520 Hydrangea macrophylla HOM05D005539 ORTHO05D006644 2.6e-41 174.9 159 54.7
Nitab4.5_0001171g0030 Nicotiana tabacum HOM05D005539 ORTHO05D006644 2.7e-38 164.9 198 49.0
SEGI_03850 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 1.9e-36 158.7 214 41.1
Nitab4.5_0003886g0090 Nicotiana tabacum HOM05D005539 ORTHO05D006644 4.3e-36 157.5 171 50.9
HPP92_019878 Vanilla planifolia HOM05D005539 ORTHO05D006644 1.8e-34 152.1 244 36.9
Solyc11g020160.2 Solanum lycopersicum HOM05D005539 ORTHO05D006644 3.7e-32 144.4 147 52.4
MD07G1221200 Malus domestica HOM05D005539 ORTHO05D006644 2.9e-24 118.2 146 46.6
C03p17190 Brassica napus HOM05D001640 ORTHO05D001612 3.5e-22 111.3 74 81.1
MCO09G726 Micromonas commoda HOM05D005539 ORTHO05D006644 1.2e-19 102.8 762 22.7
BolC3t14133H Brassica oleracea HOM05D001640 ORTHO05D001612 1.6e-19 102.4 73 75.3
SHI03444 Sapria himalayana HOM05D000002 ORTHO05D000001 4.9e-16 90.9 108 45.4
Cre06.g278900 Chlamydomonas reinhardtii HOM05D005539 ORTHO05D006644 5.8e-09 67.4 324 22.8
C09p19940 Brassica napus HOM05D001640 ORTHO05D006644 3.5e-06 58.2 37 83.8


User provided reference genes

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