Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A10p28170 Brassica napus HOM05D004199 ORTHO05D005905 0.0e+00 1605.9 899 100.0
BraA10t44866Z Brassica rapa HOM05D004199 ORTHO05D005905 0.0e+00 1605.9 899 100.0
C09p68380 Brassica napus HOM05D004199 ORTHO05D005905 0.0e+00 1530.4 900 95.3
BolC9t59585H Brassica oleracea HOM05D004199 ORTHO05D005905 0.0e+00 1522.3 902 95.0
BcaB08g37246 Brassica carinata HOM05D004199 ORTHO05D005905 0.0e+00 1408.3 917 86.9
BraA03t09739Z Brassica rapa HOM05D004199 ORTHO05D005905 0.0e+00 1289.2 908 83.9
A03p03960 Brassica napus HOM05D004199 ORTHO05D005905 0.0e+00 1282.3 906 80.1
C03p04430 Brassica napus HOM05D004199 ORTHO05D005905 0.0e+00 1261.1 908 82.6
Sp6g34340 Schrenkiella parvula HOM05D004199 ORTHO05D005905 0.0e+00 1255.7 917 80.7
BolC3t12974H Brassica oleracea HOM05D004199 ORTHO05D005905 0.0e+00 1247.3 908 81.9
AL6G19260 Arabidopsis lyrata HOM05D004199 ORTHO05D005905 0.0e+00 1188.3 922 77.8
Thhalv10012615m.g Eutrema salsugineum HOM05D004199 ORTHO05D005905 0.0e+00 1187.9 921 77.3
BcaB01g05585 Brassica carinata HOM05D004199 ORTHO05D005905 0.0e+00 1185.6 913 75.0
Carub.0006s0751 Capsella rubella HOM05D004199 ORTHO05D005905 0.0e+00 1178.3 924 77.2
AT5G08550 Arabidopsis thaliana HOM05D004199 ORTHO05D005905 0.0e+00 1171.8 922 75.5
Aa31LG3G17980 Aethionema arabicum HOM05D004199 ORTHO05D005905 0.0e+00 1169.1 861 75.1
CARHR204430 Cardamine hirsuta HOM05D004199 ORTHO05D005905 0.0e+00 1147.1 926 71.3
THA.LOC104800384 Tarenaya hassleriana HOM05D004199 ORTHO05D005905 4.7e-302 1041.2 917 64.8
Eucgr.K00868 Eucalyptus grandis HOM05D004199 ORTHO05D005905 1.2e-233 813.9 954 52.5
Sed0023765 Sechium edule HOM05D004199 ORTHO05D005905 1.7e-232 810.1 954 51.3
Gorai.011G063300 Gossypium raimondii HOM05D004199 ORTHO05D005905 1.1e-231 807.4 943 52.2
CsaV3_5G033970 Cucumis sativus L. HOM05D004199 ORTHO05D005905 3.3e-231 805.8 964 50.9
MELO3C012214.2 Cucumis melo HOM05D004199 ORTHO05D005905 1.3e-230 803.9 961 51.1
Gohir.A10G057500 Gossypium hirsutum HOM05D004199 ORTHO05D005905 4.8e-230 802.0 938 52.1
Gohir.D10G059300 Gossypium hirsutum HOM05D004199 ORTHO05D005905 6.2e-230 801.6 945 52.0
Manes.04G160500 Manihot esculenta HOM05D004199 ORTHO05D005905 4.0e-229 798.9 884 53.5
COL.COLO4_31201 Corchorus olitorius HOM05D004199 ORTHO05D005905 6.9e-229 798.1 936 51.7
Eucgr.G02350 Eucalyptus grandis HOM05D004199 ORTHO05D005905 3.5e-225 785.8 983 50.8
CiPaw.16G003100 Carya illinoinensis HOM05D004199 ORTHO05D005905 4.3e-223 778.9 842 53.8
ClCG05G023030 Citrullus lanatus HOM05D004199 ORTHO05D005905 6.2e-222 775.0 946 50.7
Cfa018630 Carpinus fangiana HOM05D004199 ORTHO05D005905 1.4e-221 773.9 954 50.8
CANSAT56G2350 Cannabis sativa HOM05D004199 ORTHO05D005905 6.9e-221 771.5 918 52.5
CSS0043668 Camellia sinensis var. sinensis HOM05D004199 ORTHO05D005905 2.0e-220 770.0 910 50.8
Lj6A766T32 Lonicera japonica HOM05D004199 ORTHO05D005905 3.8e-219 765.8 886 52.0
MD13G1046700 Malus domestica HOM05D004199 ORTHO05D005905 4.2e-218 762.3 949 50.8
TWI53G1601 Tripterygium wilfordii HOM05D004199 ORTHO05D005905 5.5e-218 761.9 826 54.4
AUR62044199 Chenopodium quinoa HOM05D004199 ORTHO05D005905 4.6e-217 758.8 928 51.6
Ah.04g153070 Amaranthus hybridus HOM05D004199 ORTHO05D005905 6.7e-216 755.0 947 49.6
RcHm_v2.0_Chr4g0435851 Rosa chinensis HOM05D004199 ORTHO05D005905 4.8e-214 748.8 945 50.5
EL10Ac9g22638 Beta vulgaris HOM05D004199 ORTHO05D005905 8.2e-214 748.0 939 49.9
Atru.chr6.1864_Atru.chr6.1865 Acer truncatum HOM05D004199 ORTHO05D005905 1.8e-213 746.9 840 52.4
Ciclev10014191m.g Citrus clementina HOM05D004199 ORTHO05D005905 3.1e-213 746.1 874 50.9
Thecc.10G125100 Theobroma cacao HOM05D004199 ORTHO05D005905 3.4e-212 742.7 884 51.8
TAR623G0314 Trochodendron aralioides HOM05D004199 ORTHO05D005905 1.7e-211 740.3 843 51.7
FAN07G1167 Fragaria x ananassa HOM05D004199 ORTHO05D005905 2.2e-211 740.0 956 49.6
DCAR_030084 Daucus carota HOM05D004199 ORTHO05D005905 8.4e-211 738.0 877 50.3
Potri.008G002600 Populus trichocarpa HOM05D004199 ORTHO05D005905 8.4e-211 738.0 880 49.2
FvH4_4g28100 Fragaria vesca HOM05D004199 ORTHO05D005905 1.9e-210 736.9 944 49.8
FAN22G1977 Fragaria x ananassa HOM05D004199 ORTHO05D005905 3.2e-210 736.1 944 49.4
FAN12G0509 Fragaria x ananassa HOM05D004199 ORTHO05D005905 1.6e-209 733.8 953 49.4
vmacro14411 Vaccinium macrocarpon HOM05D004199 ORTHO05D005905 2.3e-208 729.9 962 47.5
MBI01_g12859_MAGBIO Magnolia biondii HOM05D004199 ORTHO05D005905 3.9e-208 729.2 867 50.7
MD16G1048400 Malus domestica HOM05D004199 ORTHO05D005905 4.3e-207 725.7 952 48.5
FAN17G3109 Fragaria x ananassa HOM05D004199 ORTHO05D005905 5.7e-207 725.3 862 51.0
Sabra08G0000600 Salix brachista HOM05D004199 ORTHO05D005905 2.8e-206 723.0 928 47.0
Hma1.2p1_0399F.1_g144220 Hydrangea macrophylla HOM05D004199 ORTHO05D005905 1.5e-204 717.2 840 50.1
Nn6g35106 Nelumbo nucifera HOM05D004199 ORTHO05D005905 5.9e-204 715.3 852 50.5
Cc11_g10620 Coffea canephora HOM05D004199 ORTHO05D005905 1.7e-203 713.8 975 48.5
SGA_v2.0_scaffold14G06820 Striga asiatica HOM05D004199 ORTHO05D005905 3.6e-201 706.1 966 46.8
Psat2g189000 Pisum sativum HOM05D004199 ORTHO05D005905 1.4e-200 704.1 943 48.7
Haze_17439 Corylus avellana HOM05D004199 ORTHO05D005905 6.7e-200 701.8 950 48.5
Hma1.2p1_2265F.1_g318400 Hydrangea macrophylla HOM05D004199 ORTHO05D005905 2.0e-199 700.3 846 49.9
Dinv05796 Davidia involucrata HOM05D004199 ORTHO05D005905 2.2e-198 696.8 843 49.6
ECA234G0057 Erigeron canadensis HOM05D004199 ORTHO05D005905 8.2e-198 694.9 914 48.0
EL10Ac8g19592 Beta vulgaris HOM05D004199 ORTHO05D005905 2.4e-197 693.3 936 48.4
Aqoxy2G01512 Aquilegia oxysepala HOM05D004199 ORTHO05D005905 3.1e-197 693.0 838 48.0
Medtr5g007520 Medicago truncatula HOM05D004199 ORTHO05D005905 3.1e-197 693.0 941 47.7
VMungo1383G0908 Vigna mungo HOM05D004199 ORTHO05D005905 5.3e-197 692.2 932 47.4
ATR0665G261 Amborella trichopoda HOM05D004199 ORTHO05D005905 6.9e-197 691.8 961 46.8
Phvul.001G030200 Phaseolus vulgaris HOM05D004199 ORTHO05D005905 1.7e-195 687.2 919 47.8
Peaxi162Scf00102g00927 Petunia axillaris HOM05D004199 ORTHO05D005905 3.8e-195 686.0 827 50.3
Rhsim03G0238800 Rhododendron simsii HOM05D004199 ORTHO05D005905 5.0e-195 685.6 937 45.6
CDE05G0525 Ceratophyllum demersum HOM05D004199 ORTHO05D005905 8.5e-195 684.9 938 47.0
Glyma.07G155300 Glycine max HOM05D004199 ORTHO05D005905 1.4e-194 684.1 931 47.8
CAN.G184.89 Capsicum annuum HOM05D004199 ORTHO05D005905 1.0e-192 677.9 914 46.2
Duzib235G0865 Durio zibethinus HOM05D004199 ORTHO05D005905 5.7e-191 672.2 870 48.2
Glyma.07G227400 Glycine max HOM05D004199 ORTHO05D005905 6.3e-190 668.7 936 46.0
Prupe.1G305200 Prunus persica HOM05D004199 ORTHO05D005905 9.1e-189 664.8 955 47.0
Lj3g0002767 Lotus japonicus HOM05D004199 ORTHO05D005905 1.5e-188 664.1 947 45.3
CDE01G0057 Ceratophyllum demersum HOM05D004199 ORTHO05D005905 2.6e-188 663.3 901 47.6
Ca_25946_v3 Cicer arietinum L. HOM05D004199 ORTHO05D005905 2.6e-188 663.3 952 45.9
PSO339G4136 Papaver somniferum HOM05D004199 ORTHO05D005905 2.6e-188 663.3 857 48.5
Glyma.20G028100 Glycine max HOM05D004199 ORTHO05D005905 1.7e-187 660.6 910 47.6
Sc17g0004690 Simmondsia chinensis HOM05D004199 ORTHO05D005905 1.7e-187 660.6 891 47.1
HanXRQChr17g0568011 Helianthus annuus HOM05D004199 ORTHO05D005905 2.2e-187 660.2 791 49.7
PSO801G0529 Papaver somniferum HOM05D004199 ORTHO05D005905 5.0e-187 659.1 949 46.0
HPP92_022758 Vanilla planifolia HOM05D004199 ORTHO05D005905 6.5e-187 658.7 932 45.4
Sopen05g005660 Solanum pennellii HOM05D004199 ORTHO05D005905 2.5e-186 656.8 891 46.1
Lsat_1_v5_gn_4_1641 Lactuca sativa HOM05D004199 ORTHO05D005905 5.5e-186 655.6 901 46.2
Nitab4.5_0004122g0060 Nicotiana tabacum HOM05D004199 ORTHO05D005905 9.4e-186 654.8 990 43.8
Lalb_Chr10g0099721 Lupinus albus HOM05D004199 ORTHO05D005905 3.6e-185 652.9 856 47.5
PGSC0003DMG400000826 Solanum tuberosum HOM05D004199 ORTHO05D005905 1.8e-184 650.6 895 45.7
Lalb_Chr04g0254951 Lupinus albus HOM05D004199 ORTHO05D005905 1.5e-183 647.5 922 45.7
TPR.G37944 Trifolium pratense HOM05D004199 ORTHO05D005905 2.2e-182 643.7 773 48.8
Nitab4.5_0011513g0020 Nicotiana tabacum HOM05D004199 ORTHO05D005905 5.3e-181 639.0 964 44.0
Hma1.2p1_0592F.1_g185323 Hydrangea macrophylla HOM05D004199 ORTHO05D005905 1.0e-179 634.8 781 49.3
unitig_22.g6876 Utricularia gibba HOM05D004199 ORTHO05D005905 2.1e-177 627.1 981 43.0
SEGI_39962 Sequoiadendron giganteum HOM05D004199 ORTHO05D005905 7.5e-175 618.6 939 42.8
arahy.Tifrunner.gnm1.ann1.9AQU5H Arachis hypogaea HOM05D004199 ORTHO05D005905 1.7e-174 617.5 967 44.0
arahy.Tifrunner.gnm1.ann1.P5TZTU Arachis hypogaea HOM05D004199 ORTHO05D005905 1.1e-170 604.7 989 43.0
Migut.E00297 Erythranthe guttata HOM05D004199 ORTHO05D005905 6.8e-168 595.5 942 43.3
Aqoxy6G00799 Aquilegia oxysepala HOM05D004199 ORTHO05D005905 2.0e-164 583.9 790 43.3
Solyc05g009850.4 Solanum lycopersicum HOM05D004199 ORTHO05D005905 7.2e-162 575.5 570 53.0
Os03g0853700 Oryza sativa ssp. japonica HOM05D004199 ORTHO05D005905 1.2e-159 568.2 979 40.2
Zm00001eb064800 Zea mays HOM05D004199 ORTHO05D005905 9.8e-159 565.1 988 40.9
AagrBONN_evm.TU.Sc2ySwM_228.4147 Anthoceros agrestis HOM05D004199 ORTHO05D005905 1.2e-148 531.6 916 39.6
Actinidia38395 Actinidia chinensis HOM05D004199 ORTHO05D005905 1.3e-147 528.1 631 49.0
GSVIVG01011956001 Vitis vinifera HOM05D004199 ORTHO05D005905 2.2e-142 510.8 484 56.0
AagrBONN_evm.TU.Sc2ySwM_368.435 Anthoceros agrestis HOM05D004199 ORTHO05D005905 4.9e-142 509.6 915 38.9
AUR62042759 Chenopodium quinoa HOM05D004199 ORTHO05D005905 3.4e-135 486.9 480 54.6
SMO259G0010 Selaginella moellendorffii HOM05D004199 ORTHO05D005905 2.2e-134 484.2 818 39.5
Mapoly0131s0026 Marchantia polymorpha HOM05D004199 ORTHO05D005905 1.6e-132 478.0 1010 36.9
Pp3c5_20240 Physcomitrium patens HOM05D004199 ORTHO05D005905 2.7e-132 477.2 982 35.8
Oeu041359.1 Olea europaea HOM05D004199 ORTHO05D005905 9.6e-130 468.8 477 53.5
AT5G09210 Arabidopsis thaliana HOM05D004199 ORTHO05D005905 7.9e-108 396.0 300 69.7
Rhsim01G0212500 Rhododendron simsii HOM05D004199 ORTHO05D005905 3.4e-103 380.6 547 44.4
CARHR203800 Cardamine hirsuta HOM05D004199 ORTHO05D005905 1.6e-100 371.7 263 75.3
CBR_g46838 Chara braunii HOM05D004199 ORTHO05D005905 3.0e-99 367.5 554 40.4
Nitab4.5_0007631g0010 Nicotiana tabacum HOM05D004199 ORTHO05D005905 2.4e-80 304.7 480 40.8
Zm00001eb177730 Zea mays HOM05D004199 ORTHO05D005905 1.6e-68 265.4 394 42.4
Zm00001eb381810 Zea mays HOM05D004199 ORTHO05D005905 2.0e-66 258.5 381 42.5
Glyma.18G205900 Glycine max HOM05D004199 ORTHO05D005905 5.0e-62 243.8 294 48.0
MCO14G506 Micromonas commoda HOM05D004199 ORTHO05D005905 1.2e-60 239.2 488 32.8
Oeu041360.1 Olea europaea HOM05D004199 ORTHO05D005905 2.3e-59 235.0 482 41.7
QL01p046262 Quercus lobata HOM05D004199 ORTHO05D005905 6.8e-59 233.4 347 45.8
Zm00001eb323900 Zea mays HOM05D004199 ORTHO05D005905 3.7e-57 227.6 314 44.3
Cre06.g269350 Chlamydomonas reinhardtii HOM05D004199 ORTHO05D005905 3.5e-55 221.1 583 27.8
Actinidia13676 Actinidia chinensis HOM05D004199 ORTHO05D005905 3.6e-52 211.1 171 62.0
GSVIVG01011955001 Vitis vinifera HOM05D004199 ORTHO05D005905 4.7e-52 210.7 372 42.5
EL10Ac6g14565 Beta vulgaris HOM05D004199 ORTHO05D005905 9.8e-50 203.0 168 59.5
AUR62033048 Chenopodium quinoa HOM05D004199 ORTHO05D005905 1.7e-49 202.2 425 43.1
Cpa.g.sc221.8 Carica papaya HOM05D004199 ORTHO05D005905 1.6e-47 195.7 408 41.7
Actinidia13675 Actinidia chinensis HOM05D004199 ORTHO05D005905 1.5e-34 152.5 424 38.7
CARHR069330 Cardamine hirsuta HOM05D004199 ORTHO05D005905 3.9e-30 137.9 88 80.7
EL10Ac6g13882 Beta vulgaris HOM05D004199 ORTHO05D005905 6.6e-30 137.1 95 67.4
Thecc.06G064500 Theobroma cacao HOM05D004199 ORTHO05D005905 1.7e-22 112.5 82 67.1
AagrBONN_evm.TU.Sc2ySwM_368.450 Anthoceros agrestis HOM05D004199 ORTHO05D005905 1.9e-16 92.4 84 51.2
Potri.006G020200 Populus trichocarpa HOM05D004199 ORTHO05D005905 1.9e-16 92.4 101 55.4
Potri.006G020400 Populus trichocarpa HOM05D004199 ORTHO05D005905 1.2e-15 89.7 101 54.5
CARHR147400 Cardamine hirsuta HOM05D004199 ORTHO05D005905 7.8e-15 87.0 129 43.4
Nitab4.5_0000520g0050 Nicotiana tabacum HOM05D004199 ORTHO05D005905 1.3e-14 86.3 187 31.6
Cpa.g.sc221.6 Carica papaya HOM05D004199 ORTHO05D005905 4.3e-13 81.3 65 61.5
CARHR069340 Cardamine hirsuta HOM05D004199 ORTHO05D005905 3.1e-11 75.1 61 63.9
COL.COLO4_28252 Corchorus olitorius HOM05D004199 ORTHO05D025158 1.9e-08 65.9 89 47.2
COL.COLO4_32069 Corchorus olitorius HOM05D004199 ORTHO05D025158 3.2e-08 65.1 96 47.9
AagrBONN_evm.TU.Sc2ySwM_368.453 Anthoceros agrestis HOM05D030179 ORTHO05D026588 1.7e-06 59.3 47 48.9
Aqoxy5G02943 Aquilegia oxysepala HOM05D004199 ORTHO05D077991 2.3e-06 58.9 40 60.0


User provided reference genes

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