Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A10p10560 Brassica napus HOM05D005275 ORTHO05D006435 1.4e-119 433.0 221 100.0
BcaC04g20510 Brassica carinata HOM05D005275 ORTHO05D006435 4.2e-119 431.4 221 99.5
C09p42780 Brassica napus HOM05D005275 ORTHO05D006435 4.2e-119 431.4 221 99.5
BraA10t43140Z Brassica rapa HOM05D005275 ORTHO05D006435 1.2e-118 429.9 221 99.1
BolC9t57154H Brassica oleracea HOM05D005275 ORTHO05D006435 6.6e-117 424.1 229 96.1
BcaB08g35669 Brassica carinata HOM05D005275 ORTHO05D006435 8.7e-117 423.7 221 97.3
A02p11320 Brassica napus HOM05D005275 ORTHO05D006435 1.5e-116 422.9 221 97.3
BcaB05g22006 Brassica carinata HOM05D000442 ORTHO05D007032 3.3e-116 421.8 221 96.4
BcaC03g14459 Brassica carinata HOM05D005275 ORTHO05D006435 7.3e-116 420.6 221 96.4
C02p18700 Brassica napus HOM05D005275 ORTHO05D006435 4.8e-115 417.9 221 95.9
BraA02t06194Z Brassica rapa HOM05D005275 ORTHO05D006435 4.8e-115 417.9 221 96.4
Sp6g15240 Schrenkiella parvula HOM05D005275 ORTHO05D006435 4.0e-114 414.8 221 95.9
Thhalv10014627m.g Eutrema salsugineum HOM05D005275 ORTHO05D006435 1.5e-113 412.9 221 95.5
BolC2t08015H Brassica oleracea HOM05D005275 ORTHO05D006435 3.8e-112 408.3 235 90.2
AL8G27700 Arabidopsis lyrata HOM05D005275 ORTHO05D006435 5.6e-108 394.4 222 91.0
AT5G53070 Arabidopsis thaliana HOM05D005275 ORTHO05D006435 1.3e-107 393.3 222 91.0
Carub.0008s1327 Capsella rubella HOM05D005275 ORTHO05D006435 1.1e-106 390.2 222 90.5
CARHR266090 Cardamine hirsuta HOM05D005275 ORTHO05D006435 2.4e-106 389.0 222 91.0
Aa31LG3G9390 Aethionema arabicum HOM05D005626 ORTHO05D007372 2.5e-95 352.4 221 81.9
THA.LOC104811989 Tarenaya hassleriana HOM05D005275 ORTHO05D006435 2.5e-92 342.4 219 78.1
Cpa.g.sc69.87 Carica papaya HOM05D005275 ORTHO05D006435 1.4e-74 283.5 219 64.4
Duzib114G0832 Durio zibethinus HOM05D005275 ORTHO05D006435 1.4e-69 266.9 219 61.2
Atru.chr1.1611 Acer truncatum HOM05D005275 ORTHO05D006435 5.2e-69 265.0 219 61.6
Ciclev10022175m.g Citrus clementina HOM05D005275 ORTHO05D006435 2.0e-68 263.1 219 59.8
PGR042G0357 Punica granatum HOM05D005275 ORTHO05D006435 2.6e-68 262.7 218 62.8
TWI39G0072 Tripterygium wilfordii HOM05D005275 ORTHO05D006435 4.4e-68 261.9 219 62.6
Potri.012G121228 Populus trichocarpa HOM05D005275 ORTHO05D006435 2.8e-67 259.2 219 61.2
Potri.012G017300 Populus trichocarpa HOM05D005275 ORTHO05D006435 3.7e-67 258.8 219 60.7
QL09p007976 Quercus lobata HOM05D005275 ORTHO05D006435 3.7e-67 258.8 220 60.9
Eucgr.H01489 Eucalyptus grandis HOM05D005275 ORTHO05D006435 4.8e-67 258.5 218 63.3
Cfa016214 Carpinus fangiana HOM05D005275 ORTHO05D006435 1.1e-66 257.3 220 59.5
FAN10G0352 Fragaria x ananassa HOM05D005275 ORTHO05D006435 4.1e-66 255.4 222 60.4
Thecc.10G105800 Theobroma cacao HOM05D005275 ORTHO05D006435 5.3e-66 255.0 205 64.4
Manes.01G140200 Manihot esculenta HOM05D005275 ORTHO05D006435 7.0e-66 254.6 219 59.4
FAN01G0712 Fragaria x ananassa HOM05D000442 ORTHO05D007032 9.1e-66 254.2 214 61.7
FAN10G2096 Fragaria x ananassa HOM05D000442 ORTHO05D007032 1.2e-65 253.8 216 61.1
RcHm_v2.0_Chr1g0381511 Rosa chinensis HOM05D005275 ORTHO05D006435 3.5e-65 252.3 223 60.1
Sed0013694 Sechium edule HOM05D005275 ORTHO05D006435 1.0e-64 250.8 219 61.6
CANSAT21G1202 Cannabis sativa HOM05D005275 ORTHO05D006435 3.8e-64 248.8 219 60.7
Gorai.009G304100 Gossypium raimondii HOM05D005275 ORTHO05D006435 6.5e-64 248.1 219 58.9
COL.COLO4_38546 Corchorus olitorius HOM05D005275 ORTHO05D006435 1.1e-63 247.3 223 59.6
Gohir.A05G287800 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.1e-63 247.3 219 58.4
CiPaw.06G045000 Carya illinoinensis HOM05D005275 ORTHO05D006435 1.5e-63 246.9 220 58.2
Gohir.D05G289000 Gossypium hirsutum HOM05D005275 ORTHO05D006435 4.2e-63 245.4 219 58.0
Sabra12G0015200 Salix brachista HOM05D005275 ORTHO05D007032 5.5e-63 245.0 248 54.4
Sed0020778 Sechium edule HOM05D005275 ORTHO05D006435 9.4e-63 244.2 218 59.6
Prupe.2G313400 Prunus persica HOM05D005275 ORTHO05D006435 1.2e-62 243.8 221 57.5
ClCG05G009030 Citrullus lanatus HOM05D005275 ORTHO05D006435 2.1e-62 243.0 218 59.6
Gohir.A10G201500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 3.6e-62 242.3 219 57.1
Gohir.A11G223000 Gossypium hirsutum HOM05D005275 ORTHO05D006435 3.6e-62 242.3 219 57.1
Gohir.A12G028500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 3.6e-62 242.3 219 57.1
Gohir.A08G051700 Gossypium hirsutum HOM05D005275 ORTHO05D006435 4.7e-62 241.9 219 57.1
Gohir.A12G115900 Gossypium hirsutum HOM05D005275 ORTHO05D006435 4.7e-62 241.9 219 57.1
Gohir.D01G152400 Gossypium hirsutum HOM05D005275 ORTHO05D006435 4.7e-62 241.9 219 57.1
CsaV3_3G019750 Cucumis sativus L. HOM05D005275 ORTHO05D006435 1.0e-61 240.7 218 59.6
Gohir.D05G384500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.4e-61 240.4 219 56.6
Gohir.A04G061600 Gossypium hirsutum HOM05D005275 ORTHO05D006435 3.0e-61 239.2 219 56.6
Nn8g39914 Nelumbo nucifera HOM05D005275 ORTHO05D006435 6.7e-61 238.0 218 60.1
MD07G1293600 Malus domestica HOM05D005275 ORTHO05D006435 8.8e-61 237.7 224 59.4
Lj8A623T20 Lonicera japonica HOM05D005275 ORTHO05D006435 1.5e-60 236.9 220 57.7
Ciclev10023889m.g Citrus clementina HOM05D005275 ORTHO05D006435 4.4e-60 235.3 221 56.1
Haze_00229 Corylus avellana HOM05D005275 ORTHO05D006435 4.4e-60 235.3 219 57.1
PSO421G0063 Papaver somniferum HOM05D005275 ORTHO05D006435 4.8e-59 231.9 219 57.5
CSS0019342 Camellia sinensis var. sinensis HOM05D005275 ORTHO05D006435 8.2e-59 231.1 220 55.9
ECA236G4645 Erigeron canadensis HOM05D005275 ORTHO05D006435 8.2e-59 231.1 190 64.7
Hma1.2p1_1507F.1_g287690 Hydrangea macrophylla HOM05D005275 ORTHO05D006435 8.2e-59 231.1 194 60.3
Actinidia34231 Actinidia chinensis HOM05D005275 ORTHO05D006435 9.1e-58 227.6 198 62.1
HanXRQChr16g0505961 Helianthus annuus HOM05D005275 ORTHO05D006435 1.2e-57 227.3 218 55.5
Lsat_1_v5_gn_7_91160 Lactuca sativa HOM05D005275 ORTHO05D006435 1.2e-57 227.3 220 54.1
Nitab4.5_0004499g0010 Nicotiana tabacum HOM05D005275 ORTHO05D006435 1.2e-57 227.3 197 59.4
Glyma.06G288700 Glycine max HOM05D005275 ORTHO05D006435 1.6e-57 226.9 222 55.9
HanXRQChr04g0128021 Helianthus annuus HOM05D005275 ORTHO05D006435 2.0e-57 226.5 218 55.5
Sopen05g023270 Solanum pennellii HOM05D005275 ORTHO05D006435 2.7e-57 226.1 226 54.4
Lalb_Chr22g0360521 Lupinus albus HOM05D005275 ORTHO05D006435 5.9e-57 224.9 215 56.7
MSTRG.48 Avicennia marina HOM05D005275 ORTHO05D006435 7.7e-57 224.6 201 60.7
DCAR_008951 Daucus carota HOM05D005275 ORTHO05D006435 7.7e-57 224.6 218 56.0
Glyma.19G085300 Glycine max HOM05D005275 ORTHO05D006435 7.7e-57 224.6 222 54.5
Nitab4.5_0000006g0650 Nicotiana tabacum HOM05D005275 ORTHO05D006435 7.7e-57 224.6 197 59.4
Solyc05g032880.3 Solanum lycopersicum HOM05D005275 ORTHO05D006435 7.7e-57 224.6 226 54.0
arahy.Tifrunner.gnm1.ann1.AF7P3K Arachis hypogaea HOM05D005275 ORTHO05D006435 1.0e-56 224.2 217 55.3
GSVIVG01038570001 Vitis vinifera HOM05D005275 ORTHO05D006435 1.0e-56 224.2 219 53.9
Lj3g0024506 Lotus japonicus HOM05D005275 ORTHO05D006435 1.3e-56 223.8 199 60.3
Peaxi162Scf00251g01010 Petunia axillaris HOM05D005275 ORTHO05D006435 1.3e-56 223.8 219 54.8
TPR.G34143 Trifolium pratense HOM05D005275 ORTHO05D006435 1.3e-56 223.8 222 55.4
Psat7g227360 Pisum sativum HOM05D005275 ORTHO05D006435 1.7e-56 223.4 222 54.5
Aqoxy7G03390 Aquilegia oxysepala HOM05D005275 ORTHO05D006435 2.2e-56 223.0 218 56.4
Cc01_g04130 Coffea canephora HOM05D005275 ORTHO05D006435 2.2e-56 223.0 208 59.1
Glyma.16G061500 Glycine max HOM05D005275 ORTHO05D006435 2.2e-56 223.0 222 53.6
EL10Ac3g05547 Beta vulgaris HOM05D005275 ORTHO05D006435 2.5e-55 219.5 218 53.2
vmacro06395 Vaccinium macrocarpon HOM05D005275 ORTHO05D006435 2.5e-55 219.5 236 53.8
MBI14_g34252_MAGBIO Magnolia biondii HOM05D005275 ORTHO05D006435 3.2e-55 219.2 220 57.3
Phvul.008G150700 Phaseolus vulgaris HOM05D005275 ORTHO05D006435 3.2e-55 219.2 222 53.6
FAN03G2656 Fragaria x ananassa HOM05D005626 ORTHO05D007032 4.2e-55 218.8 189 61.4
Migut.F01020 Erythranthe guttata HOM05D005275 ORTHO05D006435 5.5e-55 218.4 193 61.1
arahy.Tifrunner.gnm1.ann1.T9K8GJ Arachis hypogaea HOM05D005275 ORTHO05D006435 9.4e-55 217.6 214 54.2
arahy.Tifrunner.gnm1.ann1.5IWG5U Arachis hypogaea HOM05D005275 ORTHO05D006435 1.2e-54 217.2 214 54.2
Ca_10483_v3 Cicer arietinum L. HOM05D005275 ORTHO05D006435 1.2e-54 217.2 222 53.6
BcaB05g22010 Brassica carinata HOM05D005626 ORTHO05D007372 1.8e-53 213.4 124 90.3
Oeu060995.2 Olea europaea HOM05D005275 ORTHO05D006435 1.8e-53 213.4 219 56.2
Gohir.D09G028700 Gossypium hirsutum HOM05D005275 ORTHO05D006435 2.3e-53 213.0 218 54.6
Medtr5g038540 Medicago truncatula HOM05D005275 ORTHO05D006435 3.0e-53 212.6 199 57.3
Medtr1g067700 Medicago truncatula HOM05D005275 ORTHO05D006435 4.0e-53 212.2 222 51.8
SHI02356 Sapria himalayana HOM05D005275 ORTHO05D006435 5.2e-53 211.8 232 50.4
Rhsim03G0210600 Rhododendron simsii HOM05D005275 ORTHO05D006435 6.8e-53 211.5 257 49.0
TAR374G1406 Trochodendron aralioides HOM05D005275 ORTHO05D006435 8.8e-53 211.1 181 61.3
Peaxi162Scf00581g00021 Petunia axillaris HOM05D005275 ORTHO05D006435 1.2e-52 210.7 255 48.6
Hund20626 Selenicereus undatus HOM05D005275 ORTHO05D006435 2.0e-52 209.9 216 54.2
PSO675G7727 Papaver somniferum HOM05D005275 ORTHO05D006435 2.6e-52 209.5 199 56.8
Actinidia08664 Actinidia chinensis HOM05D005275 ORTHO05D006435 8.3e-51 204.5 180 61.1
Gohir.A07G020100 Gossypium hirsutum HOM05D005275 ORTHO05D006435 8.3e-51 204.5 164 65.2
HPP92_008880 Vanilla planifolia HOM05D005275 ORTHO05D006435 1.8e-50 203.4 192 58.9
CDE01G0034 Ceratophyllum demersum HOM05D005275 ORTHO05D006435 4.1e-50 202.2 220 50.9
AUR62002807 Chenopodium quinoa HOM05D005275 ORTHO05D006435 2.0e-49 199.9 218 49.5
ATR0564G295 Amborella trichopoda HOM05D005275 ORTHO05D006435 3.5e-49 199.1 205 54.1
Ah.13g074120 Amaranthus hybridus HOM05D000770 ORTHO05D000586 4.5e-49 198.7 230 48.7
Sc02g0003260 Simmondsia chinensis HOM05D005275 ORTHO05D006435 7.7e-49 198.0 235 49.4
SGA_v2.0_scaffold55G19785 Striga asiatica HOM05D005275 ORTHO05D006435 3.0e-45 186.0 196 54.1
Lj1C1021T21 Lonicera japonica HOM05D005275 ORTHO05D006435 8.8e-45 184.5 214 51.9
CDE02G4591 Ceratophyllum demersum HOM05D005275 ORTHO05D006435 1.2e-44 184.1 192 55.2
AUR62014115 Chenopodium quinoa HOM05D005275 ORTHO05D006435 2.6e-44 183.0 264 42.4
Aa31LG3G9400 Aethionema arabicum HOM05D005275 ORTHO05D006435 1.7e-43 180.3 141 71.6
Os05g0528900 Oryza sativa ssp. japonica HOM05D005275 ORTHO05D006435 9.2e-42 174.5 195 50.8
arahy.Tifrunner.gnm1.ann1.G3VF9V Arachis hypogaea HOM05D005275 ORTHO05D006435 1.2e-41 174.1 341 36.1
Zm00001eb199670 Zea mays HOM05D005275 ORTHO05D006435 1.5e-39 167.2 250 42.4
Gohir.A10G000100 Gossypium hirsutum HOM05D005275 ORTHO05D006435 4.3e-39 165.6 154 57.8
Duzib128G1952 Durio zibethinus HOM05D005275 ORTHO05D006435 4.7e-38 162.2 137 66.4
FvH4_7g32000 Fragaria vesca HOM05D005275 ORTHO05D006435 6.1e-38 161.8 141 65.2
PGSC0003DMG400005324 Solanum tuberosum HOM05D005275 ORTHO05D006435 2.3e-37 159.8 173 53.8
MELO3C019369.2 Cucumis melo HOM05D005275 ORTHO05D006435 2.6e-36 156.4 145 58.6
Gohir.A12G032500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.3e-35 154.1 146 56.2
Hma1.2p1_1507F.1_g287680 Hydrangea macrophylla HOM05D005275 ORTHO05D006435 2.9e-35 152.9 134 59.7
VMungo1383G0294 Vigna mungo HOM05D005275 ORTHO05D006435 1.8e-34 150.2 171 50.9
unitig_62.g23847 Utricularia gibba HOM05D002066 ORTHO05D001617 1.3e-32 144.1 168 52.4
Dinv21061 Davidia involucrata HOM05D005275 ORTHO05D006435 2.3e-29 133.3 96 74.0
Ciclev10024016m.g Citrus clementina HOM05D005275 ORTHO05D006435 8.9e-29 131.3 95 64.2
Sc20g0002940 Simmondsia chinensis HOM05D005275 ORTHO05D006435 1.2e-28 131.0 143 52.4
Pp3c9_14000 Physcomitrium patens HOM05D005275 ORTHO05D006435 1.9e-23 113.6 181 38.7
Mapoly0074s0056 Marchantia polymorpha HOM05D005275 ORTHO05D006435 1.4e-21 107.5 180 36.7
SMO334G0054 Selaginella moellendorffii HOM05D005275 ORTHO05D006435 3.1e-21 106.3 178 35.4
SEGI_07593 Sequoiadendron giganteum HOM05D005275 ORTHO05D006435 8.3e-19 98.2 91 56.0
Sc21g0003940 Simmondsia chinensis HOM05D007402 ORTHO05D003673 1.4e-18 97.4 136 43.4
Oeu037051.1 Olea europaea HOM05D005275 ORTHO05D006435 7.1e-18 95.1 116 47.4
Lsat_1_v5_gn_9_70281 Lactuca sativa HOM05D005275 ORTHO05D006435 9.2e-18 94.7 151 42.4
CBR_g30099 Chara braunii HOM05D005275 ORTHO05D006435 2.3e-16 90.1 183 32.8
Zm00001eb397120 Zea mays HOM05D005275 ORTHO05D006435 3.1e-13 79.7 96 46.9
Ciclev10023389m.g Citrus clementina HOM05D005275 ORTHO05D006435 2.0e-12 77.0 60 55.0
Zm00001eb089870 Zea mays HOM05D005275 ORTHO05D006435 2.6e-12 76.6 99 44.4
QL09p008105 Quercus lobata HOM05D005275 ORTHO05D006435 1.1e-10 71.2 50 68.0
Aqoxy2G00110 Aquilegia oxysepala HOM05D005275 ORTHO05D006435 4.6e-09 65.9 59 54.2
AagrBONN_evm.TU.Sc2ySwM_228.762 Anthoceros agrestis HOM05D005275 ORTHO05D006435 1.3e-08 64.3 146 34.2
MCO07G577 Micromonas commoda HOM05D005275 ORTHO05D006435 5.6e-07 58.9 163 32.5


User provided reference genes

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