Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p67600 Brassica napus HOM05D000207 ORTHO05D004956 3.1e-30 134.4 66 100.0
Oeu005091.1 Olea europaea HOM05D000207 ORTHO05D004956 1.4e-17 92.4 53 81.1
unitig_32.g11701 Utricularia gibba HOM05D000207 ORTHO05D004956 1.4e-17 92.4 61 72.1
Aa31LG9G3040 Aethionema arabicum HOM05D001185 ORTHO05D002551 3.0e-17 91.3 45 88.9
MD12G1011100 Malus domestica HOM05D000207 ORTHO05D004956 5.2e-17 90.5 46 87.0
Sabra08G0128000 Salix brachista HOM05D000207 ORTHO05D004956 6.8e-17 90.1 52 80.8
EL10Ac3g04993 Beta vulgaris HOM05D000001 ORTHO05D000003 8.9e-17 89.7 42 92.9
vmacro21388 Vaccinium macrocarpon HOM05D000207 ORTHO05D004956 8.9e-17 89.7 48 85.4
vmacro21393 Vaccinium macrocarpon HOM05D000207 ORTHO05D004956 8.9e-17 89.7 46 82.6
Cpa.g.c34811.1 Carica papaya HOM05D000207 ORTHO05D004956 1.2e-16 89.4 42 95.2
BcaB02g08614 Brassica carinata HOM05D000207 ORTHO05D000606 1.5e-16 89.0 41 97.6
BcaC02g09324 Brassica carinata HOM05D000207 ORTHO05D004956 1.5e-16 89.0 41 97.6
BcaC06g35508 Brassica carinata HOM05D000207 ORTHO05D004956 1.5e-16 89.0 41 97.6
A04p07690 Brassica napus HOM05D000207 ORTHO05D000606 1.5e-16 89.0 41 97.6
A07p09140 Brassica napus HOM05D000207 ORTHO05D004956 1.5e-16 89.0 41 97.6
C04p41370 Brassica napus HOM05D000207 ORTHO05D000606 1.5e-16 89.0 41 97.6
C07p14090 Brassica napus HOM05D000207 ORTHO05D004956 1.5e-16 89.0 41 97.6
BolC4t25716H Brassica oleracea HOM05D000207 ORTHO05D004956 1.5e-16 89.0 41 97.6
BolC7t41906H Brassica oleracea HOM05D000207 ORTHO05D004956 1.5e-16 89.0 41 97.6
BraA04t16461Z Brassica rapa HOM05D000207 ORTHO05D000606 1.5e-16 89.0 41 97.6
BraA07t28708Z Brassica rapa HOM05D000207 ORTHO05D004956 1.5e-16 89.0 41 97.6
Thhalv10021852m.g Eutrema salsugineum HOM05D000207 ORTHO05D004956 1.5e-16 89.0 41 97.6
Zm00001eb176950 Zea mays HOM05D000207 ORTHO05D004956 1.5e-16 89.0 41 97.6
Actinidia39908 Actinidia chinensis HOM05D000207 ORTHO05D004956 2.0e-16 88.6 41 95.1
Aqoxy1G01024 Aquilegia oxysepala HOM05D000207 ORTHO05D004956 2.0e-16 88.6 41 95.1
CSS0020261 Camellia sinensis var. sinensis HOM05D000207 ORTHO05D004956 2.0e-16 88.6 41 95.1
CAN.G274.30 Capsicum annuum HOM05D000207 ORTHO05D004956 2.0e-16 88.6 41 95.1
Cc03_g05640 Coffea canephora HOM05D000207 ORTHO05D004956 2.0e-16 88.6 41 95.1
Duzib235G1015 Durio zibethinus HOM05D000207 ORTHO05D004956 2.0e-16 88.6 41 95.1
Gohir.A05G111600 Gossypium hirsutum HOM05D000207 ORTHO05D004956 2.0e-16 88.6 41 95.1
Gohir.D05G112000 Gossypium hirsutum HOM05D000207 ORTHO05D004956 2.0e-16 88.6 41 95.1
Gorai.009G116200 Gossypium raimondii HOM05D000207 ORTHO05D004956 2.0e-16 88.6 41 95.1
HanXRQChr03g0091521 Helianthus annuus HOM05D000207 ORTHO05D004956 2.0e-16 88.6 41 95.1
HanXRQChr13g0421281 Helianthus annuus HOM05D000207 ORTHO05D004956 2.0e-16 88.6 41 95.1
Lsat_1_v5_gn_3_117461 Lactuca sativa HOM05D000207 ORTHO05D004956 2.0e-16 88.6 41 95.1
Nitab4.5_0001379g0120 Nicotiana tabacum HOM05D000207 ORTHO05D004956 2.0e-16 88.6 41 95.1
Nitab4.5_0003038g0050 Nicotiana tabacum HOM05D000207 ORTHO05D004956 2.0e-16 88.6 41 95.1
Hund03049 Selenicereus undatus HOM05D000207 ORTHO05D004956 2.0e-16 88.6 41 95.1
Sc25g0003710 Simmondsia chinensis HOM05D000207 ORTHO05D004956 2.0e-16 88.6 41 95.1
Solyc04g008890.3 Solanum lycopersicum HOM05D000207 ORTHO05D004956 2.0e-16 88.6 41 95.1
Solyc08g069080.4 Solanum lycopersicum HOM05D000207 ORTHO05D004956 2.0e-16 88.6 41 95.1
Sopen04g004070 Solanum pennellii HOM05D000207 ORTHO05D004956 2.0e-16 88.6 41 95.1
PGSC0003DMG400025301 Solanum tuberosum HOM05D000207 ORTHO05D004956 2.0e-16 88.6 41 95.1
PGSC0003DMG400029581 Solanum tuberosum HOM05D000207 ORTHO05D004956 2.0e-16 88.6 41 95.1
arahy.Tifrunner.gnm1.ann1.DCT04E Arachis hypogaea HOM05D000207 ORTHO05D004956 2.6e-16 88.2 57 77.2
AUR62026315 Chenopodium quinoa HOM05D000207 ORTHO05D004956 2.6e-16 88.2 41 92.7
AUR62026510 Chenopodium quinoa HOM05D000207 ORTHO05D004956 2.6e-16 88.2 41 92.7
Duzib043G0002 Durio zibethinus HOM05D000207 ORTHO05D004956 2.6e-16 88.2 41 92.7
Duzib160G0169 Durio zibethinus HOM05D000207 ORTHO05D004956 2.6e-16 88.2 41 92.7
Potri.008G168000 Populus trichocarpa HOM05D000207 ORTHO05D004956 2.6e-16 88.2 41 95.1
Sabra10G0036900 Salix brachista HOM05D000207 ORTHO05D004956 2.6e-16 88.2 41 95.1
THA.LOC104808632 Tarenaya hassleriana HOM05D000207 ORTHO05D004956 2.6e-16 88.2 41 92.7
vmacro15450 Vaccinium macrocarpon HOM05D000207 ORTHO05D004956 2.6e-16 88.2 41 92.7
AL3G37970 Arabidopsis lyrata HOM05D000207 ORTHO05D004956 3.4e-16 87.8 41 95.1
AL7G41900 Arabidopsis lyrata HOM05D000207 ORTHO05D004956 3.4e-16 87.8 41 95.1
AT4G14342 Arabidopsis thaliana HOM05D000207 ORTHO05D004956 3.4e-16 87.8 41 95.1
Carub.0003s2357 Capsella rubella HOM05D000207 ORTHO05D004956 3.4e-16 87.8 41 95.1
CARHR099290 Cardamine hirsuta HOM05D000207 ORTHO05D004956 3.4e-16 87.8 41 95.1
ECA232G2626 Erigeron canadensis HOM05D000207 ORTHO05D004956 3.4e-16 87.8 41 92.7
ECA240G3918 Erigeron canadensis HOM05D000207 ORTHO05D004956 3.4e-16 87.8 41 92.7
Thhalv10026688m.g Eutrema salsugineum HOM05D000207 ORTHO05D004956 3.4e-16 87.8 41 95.1
MD03G1200200 Malus domestica HOM05D000207 ORTHO05D004956 3.4e-16 87.8 41 92.7
Os08g0444100 Oryza sativa ssp. japonica HOM05D000207 ORTHO05D004956 3.4e-16 87.8 41 95.1
SalBow3G2895 Salvia bowleyana HOM05D000207 ORTHO05D004956 3.4e-16 87.8 45 86.7
Sp3g20990 Schrenkiella parvula HOM05D000207 ORTHO05D004956 3.4e-16 87.8 41 95.1
Sopen08g022730 Solanum pennellii HOM05D000207 ORTHO05D004956 3.4e-16 87.8 41 92.7
Atru.chr4.2043 Acer truncatum HOM05D000207 ORTHO05D004956 4.4e-16 87.4 41 95.1
Atru.chr4.2046 Acer truncatum HOM05D000207 ORTHO05D004956 4.4e-16 87.4 41 95.1
CANSAT54G2786 Cannabis sativa HOM05D000207 ORTHO05D004956 4.4e-16 87.4 41 92.7
Migut.N00279 Erythranthe guttata HOM05D000207 ORTHO05D004956 4.4e-16 87.4 41 92.7
Manes.15G041801 Manihot esculenta HOM05D000207 ORTHO05D004956 4.4e-16 87.4 41 95.1
Nn1g06872 Nelumbo nucifera HOM05D000207 ORTHO05D004956 4.4e-16 87.4 41 95.1
TAR365G0659 Trochodendron aralioides HOM05D000207 ORTHO05D004956 4.4e-16 87.4 41 92.7
GSVIVG01027834001 Vitis vinifera HOM05D000207 ORTHO05D004956 4.4e-16 87.4 41 92.7
arahy.Tifrunner.gnm1.ann1.Q94Q39 Arachis hypogaea HOM05D000677 ORTHO05D000727 5.7e-16 87.0 42 92.9
ClCG01G024000 Citrullus lanatus HOM05D000207 ORTHO05D004956 5.7e-16 87.0 41 92.7
Ciclev10013219m.g Citrus clementina HOM05D000207 ORTHO05D004956 5.7e-16 87.0 41 95.1
Lsat_1_v5_gn_6_103061 Lactuca sativa HOM05D000207 ORTHO05D004956 5.7e-16 87.0 41 92.7
Potri.010G070500 Populus trichocarpa HOM05D000207 ORTHO05D004956 5.7e-16 87.0 41 92.7
PGR031G0434 Punica granatum HOM05D000207 ORTHO05D004956 5.7e-16 87.0 41 92.7
QL06p018332 Quercus lobata HOM05D000207 ORTHO05D004956 5.7e-16 87.0 41 92.7
Sed0003648 Sechium edule HOM05D000207 ORTHO05D004956 5.7e-16 87.0 41 92.7
Sed0023527 Sechium edule HOM05D000207 ORTHO05D004956 5.7e-16 87.0 41 92.7
Thecc.06G005500 Theobroma cacao HOM05D000207 ORTHO05D004956 5.7e-16 87.0 41 92.7
TWI53G1374 Tripterygium wilfordii HOM05D000207 ORTHO05D004956 5.7e-16 87.0 41 92.7
MELO3C007190.2 Cucumis melo HOM05D000207 ORTHO05D004956 7.5e-16 86.7 41 90.2
CsaV3_6G051140 Cucumis sativus L. HOM05D000207 ORTHO05D004956 7.5e-16 86.7 41 90.2
FAN25G2312 Fragaria x ananassa HOM05D000207 ORTHO05D004956 7.5e-16 86.7 41 90.2
Hma1.2p1_0992F.1_g245270 Hydrangea macrophylla HOM05D000207 ORTHO05D004956 7.5e-16 86.7 41 92.7
Sp7g12410 Schrenkiella parvula HOM05D000207 ORTHO05D004956 7.5e-16 86.7 41 92.7
Hund11897 Selenicereus undatus HOM05D000207 ORTHO05D004956 7.5e-16 86.7 41 92.7
AT3G23325 Arabidopsis thaliana HOM05D000207 ORTHO05D004956 9.8e-16 86.3 41 92.7
arahy.Tifrunner.gnm1.ann1.AU04TH Arachis hypogaea HOM05D000207 ORTHO05D004956 9.8e-16 86.3 57 77.2
CANSAT78G1427 Cannabis sativa HOM05D000207 ORTHO05D004956 9.8e-16 86.3 41 90.2
Cfa022948 Carpinus fangiana HOM05D000411 ORTHO05D004956 9.8e-16 86.3 42 90.5
MBI07_g16899_MAGBIO Magnolia biondii HOM05D000207 ORTHO05D004956 9.8e-16 86.3 41 92.7
Os08g0278966 Oryza sativa ssp. japonica HOM05D000207 ORTHO05D004956 9.8e-16 86.3 41 92.7
PSO063G3293 Papaver somniferum HOM05D000207 ORTHO05D004956 9.8e-16 86.3 46 80.4
Prupe.4G214000 Prunus persica HOM05D000207 ORTHO05D004956 9.8e-16 86.3 41 90.2
RcHm_v2.0_Chr5g0039761 Rosa chinensis HOM05D000207 ORTHO05D004956 9.8e-16 86.3 41 90.2
MSTRG.21917 Avicennia marina HOM05D000207 ORTHO05D004956 1.3e-15 85.9 41 90.2
COL.COLO4_26870 Corchorus olitorius HOM05D000207 ORTHO05D004956 1.3e-15 85.9 41 90.2
Eucgr.E04319 Eucalyptus grandis HOM05D000207 ORTHO05D004956 1.3e-15 85.9 41 92.7
PSO170G5684 Papaver somniferum HOM05D000207 ORTHO05D004956 1.3e-15 85.9 41 90.2
PSO198G0064 Papaver somniferum HOM05D000207 ORTHO05D004956 1.3e-15 85.9 41 90.2
PSO210G1216 Papaver somniferum HOM05D000207 ORTHO05D004956 1.3e-15 85.9 41 90.2
unitig_748.g7329 Utricularia gibba HOM05D000207 ORTHO05D000606 1.3e-15 85.9 41 92.7
HPP92_005049 Vanilla planifolia HOM05D000207 ORTHO05D004956 1.3e-15 85.9 41 90.2
HPP92_005064 Vanilla planifolia HOM05D000207 ORTHO05D004956 1.3e-15 85.9 41 90.2
arahy.Tifrunner.gnm1.ann1.FXM0G0 Arachis hypogaea HOM05D000677 ORTHO05D000727 1.7e-15 85.5 41 92.7
MD11G1217300 Malus domestica HOM05D000207 ORTHO05D004956 1.7e-15 85.5 41 87.8
CiPaw.01G183100 Carya illinoinensis HOM05D000207 ORTHO05D004956 2.2e-15 85.1 41 90.2
CDE02G4280 Ceratophyllum demersum HOM05D000207 ORTHO05D004956 2.2e-15 85.1 41 90.2
CDE06G2823 Ceratophyllum demersum HOM05D000207 ORTHO05D004956 2.2e-15 85.1 41 90.2
MELO3C006416.2 Cucumis melo HOM05D000207 ORTHO05D004956 2.2e-15 85.1 41 90.2
CsaV3_3G012020 Cucumis sativus L. HOM05D000207 ORTHO05D004956 2.2e-15 85.1 41 90.2
FvH4_3g22750 Fragaria vesca HOM05D000207 ORTHO05D004956 2.2e-15 85.1 41 87.8
FvH4_7g05750 Fragaria vesca HOM05D000207 ORTHO05D004956 2.2e-15 85.1 41 87.8
FAN01G2221 Fragaria x ananassa HOM05D000207 ORTHO05D004956 2.2e-15 85.1 41 87.8
FAN03G1535 Fragaria x ananassa HOM05D000207 ORTHO05D004956 2.2e-15 85.1 41 87.8
FAN16G2624 Fragaria x ananassa HOM05D000207 ORTHO05D004956 2.2e-15 85.1 41 87.8
FAN06G2225 Fragaria x ananassa HOM05D000207 ORTHO05D004956 2.8e-15 84.7 55 74.5
FAN10G1241 Fragaria x ananassa HOM05D000207 ORTHO05D004956 3.7e-15 84.3 59 67.8
MBI16_g42515_MAGBIO Magnolia biondii HOM05D000207 ORTHO05D004956 3.7e-15 84.3 44 86.4
Phvul.009G163800 Phaseolus vulgaris HOM05D000207 ORTHO05D004956 3.7e-15 84.3 41 90.2
arahy.Tifrunner.gnm1.ann1.6C1XPZ Arachis hypogaea HOM05D000207 ORTHO05D004956 4.9e-15 84.0 41 90.2
Ciclev10006856m.g Citrus clementina HOM05D000207 ORTHO05D004956 4.9e-15 84.0 41 87.8
DCAR_024259 Daucus carota HOM05D000207 ORTHO05D004956 4.9e-15 84.0 41 87.8
DCAR_025996 Daucus carota HOM05D003850 ORTHO05D004515 4.9e-15 84.0 41 87.8
Lalb_Chr02g0158811 Lupinus albus HOM05D000207 ORTHO05D004956 4.9e-15 84.0 41 87.8
PSO210G6748 Papaver somniferum HOM05D000207 ORTHO05D004956 4.9e-15 84.0 41 85.4
PGSC0003DMG400026872 Solanum tuberosum HOM05D000207 ORTHO05D004956 4.9e-15 84.0 42 92.9
Actinidia11350 Actinidia chinensis HOM05D000207 ORTHO05D004956 6.3e-15 83.6 41 90.2
ClCG05G004290 Citrullus lanatus HOM05D000207 ORTHO05D004956 6.3e-15 83.6 41 87.8
Mapoly0001s0403 Marchantia polymorpha HOM05D000207 ORTHO05D004956 6.3e-15 83.6 41 90.2
Phvul.003G055200 Phaseolus vulgaris HOM05D000207 ORTHO05D004956 6.3e-15 83.6 41 90.2
VMungo1127G0964 Vigna mungo HOM05D000207 ORTHO05D004956 6.3e-15 83.6 56 75.0
Dinv27061 Davidia involucrata HOM05D000207 ORTHO05D004956 8.3e-15 83.2 41 87.8
FAN05G5047 Fragaria x ananassa HOM05D000709 ORTHO05D004956 8.3e-15 83.2 41 85.4
FAN14G2395 Fragaria x ananassa HOM05D000709 ORTHO05D004956 8.3e-15 83.2 41 85.4
Lj3g0015983 Lotus japonicus HOM05D000207 ORTHO05D004956 8.3e-15 83.2 41 87.8
SMO232G0034 Selaginella moellendorffii HOM05D000207 ORTHO05D004956 8.3e-15 83.2 41 90.2
FAN16G2286 Fragaria x ananassa HOM05D000207 ORTHO05D004956 1.1e-14 82.8 41 85.4
Glyma.08G291500 Glycine max HOM05D000207 ORTHO05D004956 1.1e-14 82.8 41 87.8
Glyma.18G132700 Glycine max HOM05D000207 ORTHO05D004956 1.1e-14 82.8 41 87.8
Migut.G00508 Erythranthe guttata HOM05D000207 ORTHO05D004956 1.4e-14 82.4 41 85.4
Ca_08207_v3 Cicer arietinum L. HOM05D000207 ORTHO05D004956 1.8e-14 82.0 41 85.4
Psat4g126040 Pisum sativum HOM05D000207 ORTHO05D004956 1.8e-14 82.0 41 85.4
Psat6g018880 Pisum sativum HOM05D000207 ORTHO05D004956 1.8e-14 82.0 41 85.4
CiPaw.02G111100 Carya illinoinensis HOM05D000207 ORTHO05D004956 2.4e-14 81.6 41 87.8
CBR_g8906 Chara braunii HOM05D000207 ORTHO05D004956 2.4e-14 81.6 41 90.2
FAN02G2410 Fragaria x ananassa HOM05D000709 ORTHO05D004956 2.4e-14 81.6 41 82.9
Dinv36552 Davidia involucrata HOM05D000207 ORTHO05D004956 3.1e-14 81.3 41 87.8
Medtr3g019300 Medicago truncatula HOM05D000207 ORTHO05D004956 4.1e-14 80.9 41 82.9
Medtr3g019310 Medicago truncatula HOM05D000207 ORTHO05D004956 4.1e-14 80.9 41 82.9
Medtr8g062750 Medicago truncatula HOM05D000207 ORTHO05D004956 4.1e-14 80.9 41 82.9
FAN09G1394 Fragaria x ananassa HOM05D000709 ORTHO05D004956 5.4e-14 80.5 41 82.9
AagrBONN_evm.TU.Sc2ySwM_344.2015 Anthoceros agrestis HOM05D000207 ORTHO05D004956 7.0e-14 80.1 41 82.9
Pp3c25_1640 Physcomitrium patens HOM05D000207 ORTHO05D004956 9.2e-14 79.7 41 85.4
AagrBONN_evm.TU.Sc2ySwM_369.181 Anthoceros agrestis HOM05D000207 ORTHO05D004956 2.7e-13 78.2 41 78.0
vmacro12999 Vaccinium macrocarpon HOM05D000207 ORTHO05D004956 3.5e-13 77.8 51 70.6
RcHm_v2.0_Chr7g0179491 Rosa chinensis HOM05D000207 ORTHO05D004956 7.8e-13 76.6 41 82.9
vmacro16885 Vaccinium macrocarpon HOM05D000207 ORTHO05D004956 1.7e-12 75.5 54 64.8
A06p07840 Brassica napus HOM05D000207 ORTHO05D004956 2.3e-12 75.1 34 100.0
MCO09G487 Micromonas commoda HOM05D000207 ORTHO05D004956 8.6e-12 73.2 41 80.5
Lj4g0025571 Lotus japonicus HOM05D000207 ORTHO05D004956 5.6e-11 70.5 45 73.3
Cre14.g627900 Chlamydomonas reinhardtii HOM05D000207 ORTHO05D004956 8.0e-10 66.6 41 65.9
Lj4g0019776 Lotus japonicus HOM05D000207 ORTHO05D004956 6.8e-09 63.5 32 84.4
PRCOL_00006150 Prasinoderma coloniale HOM05D000207 ORTHO05D004956 1.5e-08 62.4 41 65.9
Ah.14g081440 Amaranthus hybridus HOM05D000207 ORTHO05D004956 7.5e-08 60.1 36 72.2
VMungo0251G1197 Vigna mungo HOM05D000207 ORTHO05D004956 7.0e-06 53.5 24 91.7


User provided reference genes

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