Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p66890 Brassica napus HOM05D005264 ORTHO05D005428 6.8e-75 283.9 141 100.0
A03p47520 Brassica napus HOM05D000282 ORTHO05D005428 2.8e-36 155.6 85 90.6
A03p65660 Brassica napus HOM05D005264 ORTHO05D005428 5.3e-27 124.8 58 98.3
A05p28360 Brassica napus HOM05D000282 ORTHO05D005428 5.3e-27 124.8 58 98.3
A07p35900 Brassica napus HOM05D000282 ORTHO05D000272 5.3e-27 124.8 58 98.3
A10p17030 Brassica napus HOM05D005264 ORTHO05D005428 5.3e-27 124.8 58 98.3
A09p17330 Brassica napus HOM05D000282 ORTHO05D005428 1.5e-26 123.2 60 96.7
A09p31950 Brassica napus HOM05D000282 ORTHO05D005428 1.5e-26 123.2 60 96.7
C06p23970 Brassica napus HOM05D000282 ORTHO05D005428 1.5e-26 123.2 60 96.7
BraA09t37361Z Brassica rapa HOM05D000282 ORTHO05D005428 1.5e-26 123.2 60 96.7
C03p52890 Brassica napus HOM05D005264 ORTHO05D005428 3.4e-26 122.1 60 95.0
BraA06t25936Z Brassica rapa HOM05D000282 ORTHO05D005428 3.4e-26 122.1 60 95.0
A09p24890 Brassica napus HOM05D000282 ORTHO05D005428 5.9e-26 121.3 60 93.3
A10p10210 Brassica napus HOM05D000282 ORTHO05D005428 1.0e-25 120.6 60 93.3
BraA10t43100Z Brassica rapa HOM05D000282 ORTHO05D005428 1.0e-25 120.6 60 93.3
A02p38960 Brassica napus HOM05D000282 ORTHO05D005428 1.7e-25 119.8 60 95.0
A05p04440 Brassica napus HOM05D000282 ORTHO05D005428 1.7e-25 119.8 60 95.0
BraA03t13866Z Brassica rapa HOM05D000282 ORTHO05D005428 1.7e-25 119.8 60 95.0
BcaB04g17259 Brassica carinata HOM05D005264 ORTHO05D005428 4.1e-19 98.6 51 92.2
BcaB07g33480 Brassica carinata HOM05D005264 ORTHO05D005428 4.1e-19 98.6 51 92.2
BcaC01g01222 Brassica carinata HOM05D005264 ORTHO05D005428 4.1e-19 98.6 51 92.2
BcaC08g43212 Brassica carinata HOM05D005264 ORTHO05D005428 4.1e-19 98.6 51 92.2
A06p03250 Brassica napus HOM05D005264 ORTHO05D005428 4.1e-19 98.6 51 92.2
A08p03250 Brassica napus HOM05D005264 ORTHO05D005428 4.1e-19 98.6 51 92.2
C03p89560 Brassica napus HOM05D005264 ORTHO05D005428 4.1e-19 98.6 51 92.2
C06p05380 Brassica napus HOM05D005264 ORTHO05D005428 4.1e-19 98.6 51 92.2
BolC3t21270H Brassica oleracea HOM05D005264 ORTHO05D005428 4.1e-19 98.6 51 92.2
BolC6t35643H Brassica oleracea HOM05D005264 ORTHO05D005428 4.1e-19 98.6 51 92.2
BraA06t23536Z Brassica rapa HOM05D005264 ORTHO05D005428 4.1e-19 98.6 51 92.2
BraA08t32358Z Brassica rapa HOM05D005264 ORTHO05D005428 4.1e-19 98.6 51 92.2
Aa31LG10G3950 Aethionema arabicum HOM05D005264 ORTHO05D005428 5.3e-19 98.2 51 90.2
AT1G50300 Arabidopsis thaliana HOM05D005264 ORTHO05D005428 5.3e-19 98.2 51 90.2
Carub.0001s3940 Capsella rubella HOM05D005264 ORTHO05D005428 5.3e-19 98.2 51 90.2
CARHR040350 Cardamine hirsuta HOM05D005264 ORTHO05D005428 5.3e-19 98.2 51 90.2
Thhalv10011982m.g Eutrema salsugineum HOM05D005264 ORTHO05D005428 5.3e-19 98.2 51 90.2
Sp1g37140 Schrenkiella parvula HOM05D005264 ORTHO05D005428 5.3e-19 98.2 51 90.2
AL1G57940 Arabidopsis lyrata HOM05D005264 ORTHO05D005428 1.2e-18 97.1 51 88.2
Potri.008G085400 Populus trichocarpa HOM05D005264 ORTHO05D005428 2.2e-17 92.8 51 84.3
Potri.010G170700 Populus trichocarpa HOM05D005264 ORTHO05D005428 2.2e-17 92.8 51 80.4
Ca_03040_v3 Cicer arietinum L. HOM05D005264 ORTHO05D005428 5.0e-17 91.7 51 80.4
FAN17G2909 Fragaria x ananassa HOM05D005264 ORTHO05D005428 5.0e-17 91.7 51 80.4
Medtr4g074230 Medicago truncatula HOM05D005264 ORTHO05D005428 5.0e-17 91.7 51 80.4
Psat7g174160 Pisum sativum HOM05D005264 ORTHO05D005428 5.0e-17 91.7 51 80.4
TPR.G21570 Trifolium pratense HOM05D005264 ORTHO05D005428 5.0e-17 91.7 51 80.4
TWI77G0283 Tripterygium wilfordii HOM05D005264 ORTHO05D005428 5.0e-17 91.7 51 80.4
Lj3g0025490 Lotus japonicus HOM05D005264 ORTHO05D005428 8.5e-17 90.9 51 78.4
Rhsim09G0072300 Rhododendron simsii HOM05D005264 ORTHO05D005428 1.4e-16 90.1 51 78.4
MSTRG.26597 Avicennia marina HOM05D005264 ORTHO05D005428 1.9e-16 89.7 56 71.4
Lalb_Chr04g0258911 Lupinus albus HOM05D005264 ORTHO05D005428 1.9e-16 89.7 51 80.4
HPP92_013043 Vanilla planifolia HOM05D005264 ORTHO05D005428 1.9e-16 89.7 51 78.4
THA.LOC104826521 Tarenaya hassleriana HOM05D005264 ORTHO05D005428 2.5e-16 89.4 49 81.6
MD16G1000100 Malus domestica HOM05D005264 ORTHO05D005428 5.5e-16 88.2 51 78.4
ECA246G0499 Erigeron canadensis HOM05D005264 ORTHO05D005428 9.4e-16 87.4 51 78.4
Lalb_Chr10g0095091 Lupinus albus HOM05D005264 ORTHO05D005428 9.4e-16 87.4 51 78.4
Ah.01g001700 Amaranthus hybridus HOM05D005264 ORTHO05D005428 1.2e-15 87.0 48 83.3
CiPaw.05G167900 Carya illinoinensis HOM05D005264 ORTHO05D005428 1.2e-15 87.0 49 79.6
TAR622G0680 Trochodendron aralioides HOM05D005264 ORTHO05D005428 1.2e-15 87.0 48 79.2
Cfa008720 Carpinus fangiana HOM05D005264 ORTHO05D001742 3.6e-15 85.5 51 76.5
FAN07G0309 Fragaria x ananassa HOM05D005906 ORTHO05D007359 3.6e-15 85.5 48 79.2
Lsat_1_v5_gn_9_89240 Lactuca sativa HOM05D005264 ORTHO05D005428 3.6e-15 85.5 59 69.5
RcHm_v2.0_Chr4g0446411 Rosa chinensis HOM05D005264 ORTHO05D005428 3.6e-15 85.5 48 79.2
Haze_11731 Corylus avellana HOM05D005264 ORTHO05D005428 4.7e-15 85.1 50 78.0
Gohir.D01G138800 Gossypium hirsutum HOM05D005264 ORTHO05D005428 6.1e-15 84.7 48 75.0
Gorai.002G167100 Gossypium raimondii HOM05D005264 ORTHO05D005428 6.1e-15 84.7 48 75.0
Os07g0296200 Oryza sativa ssp. japonica HOM05D005264 ORTHO05D005428 6.1e-15 84.7 48 77.1
FvH4_4g36691 Fragaria vesca HOM05D005264 ORTHO05D005428 7.9e-15 84.3 48 77.1
FAN12G0559 Fragaria x ananassa HOM05D005906 ORTHO05D007359 7.9e-15 84.3 48 77.1
Prupe.1G345000 Prunus persica HOM05D005264 ORTHO05D005428 7.9e-15 84.3 48 77.1
SHI04181 Sapria himalayana HOM05D005264 ORTHO05D005428 1.0e-14 84.0 56 67.9
CBR_g224 Chara braunii HOM05D005264 ORTHO05D005428 1.4e-14 83.6 51 76.5
Lsat_1_v5_gn_3_32780 Lactuca sativa HOM05D005264 ORTHO05D005428 1.8e-14 83.2 47 78.7
MD13G1008100 Malus domestica HOM05D005264 ORTHO05D005428 1.8e-14 83.2 48 77.1
Cc11_g02330 Coffea canephora HOM05D005264 ORTHO05D005428 2.3e-14 82.8 48 75.0
A03p37140 Brassica napus HOM05D000282 ORTHO05D005428 3.0e-14 82.4 36 97.2
AagrBONN_evm.TU.Sc2ySwM_344.985 Anthoceros agrestis HOM05D005264 ORTHO05D005428 3.9e-14 82.0 56 66.1
Gohir.A01G146454 Gossypium hirsutum HOM05D005264 ORTHO05D005428 3.9e-14 82.0 46 76.1
Lj6C722G15 Lonicera japonica HOM05D005264 ORTHO05D005428 5.2e-14 81.6 47 76.6
PSO063G3914 Papaver somniferum HOM05D005264 ORTHO05D005428 6.7e-14 81.3 48 72.9
PSO782G4655 Papaver somniferum HOM05D005264 ORTHO05D005428 6.7e-14 81.3 48 72.9
Hund27680 Selenicereus undatus HOM05D005264 ORTHO05D005428 6.7e-14 81.3 47 76.6
Hund27681 Selenicereus undatus HOM05D005264 ORTHO05D005428 6.7e-14 81.3 47 76.6
Gorai.002G167000 Gossypium raimondii HOM05D005264 ORTHO05D005428 8.8e-14 80.9 45 75.6
HanXRQChr06g0171921 Helianthus annuus HOM05D005264 ORTHO05D005428 8.8e-14 80.9 47 76.6
HanXRQChr17g0540751 Helianthus annuus HOM05D005264 ORTHO05D005428 8.8e-14 80.9 47 76.6
Mapoly0154s0004 Marchantia polymorpha HOM05D005264 ORTHO05D005428 8.8e-14 80.9 55 67.3
EL10Ac9g22906 Beta vulgaris HOM05D005264 ORTHO05D005428 1.5e-13 80.1 48 75.0
AUR62017649 Chenopodium quinoa HOM05D005264 ORTHO05D005428 1.5e-13 80.1 48 75.0
Gohir.A01G146300 Gossypium hirsutum HOM05D005264 ORTHO05D005428 1.5e-13 80.1 45 75.6
Pp3c17_960 Physcomitrium patens HOM05D005264 ORTHO05D005428 1.5e-13 80.1 56 66.1
Manes.15G115200 Manihot esculenta HOM05D005264 ORTHO05D005428 2.0e-13 79.7 44 77.3
Zm00001eb104370 Zea mays HOM05D005264 ORTHO05D005428 2.0e-13 79.7 45 77.8
Zm00001eb320850 Zea mays HOM05D005264 ORTHO05D005428 2.0e-13 79.7 45 77.8
ATR0618G090 Amborella trichopoda HOM05D005264 ORTHO05D005428 3.3e-13 79.0 45 75.6
Sed0010268 Sechium edule HOM05D005264 ORTHO05D005428 3.3e-13 79.0 42 81.0
SMO134G0144 Selaginella moellendorffii HOM05D005264 ORTHO05D005428 3.3e-13 79.0 56 66.1
Eucgr.G02564 Eucalyptus grandis HOM05D005264 ORTHO05D005428 4.4e-13 78.6 43 79.1
Gohir.D01G138900 Gossypium hirsutum HOM05D005264 ORTHO05D005428 5.7e-13 78.2 45 73.3
Peaxi162Scf00760g00024 Petunia axillaris HOM05D005264 ORTHO05D005428 5.7e-13 78.2 45 75.6
vmacro16010 Vaccinium macrocarpon HOM05D005264 ORTHO05D005428 5.7e-13 78.2 45 75.6
DCAR_002562 Daucus carota HOM05D005264 ORTHO05D005428 7.4e-13 77.8 45 75.6
Nitab4.5_0002113g0070 Nicotiana tabacum HOM05D005264 ORTHO05D005428 7.4e-13 77.8 45 75.6
Nitab4.5_0007261g0060 Nicotiana tabacum HOM05D005264 ORTHO05D005428 7.4e-13 77.8 45 75.6
arahy.Tifrunner.gnm1.ann1.4UU5Y7 Arachis hypogaea HOM05D005264 ORTHO05D005428 1.3e-12 77.0 42 78.6
arahy.Tifrunner.gnm1.ann1.6SGT2N Arachis hypogaea HOM05D005264 ORTHO05D005428 1.3e-12 77.0 42 78.6
Glyma.11G103900 Glycine max HOM05D005264 ORTHO05D005428 1.3e-12 77.0 42 78.6
Glyma.12G028800 Glycine max HOM05D005264 ORTHO05D005428 1.3e-12 77.0 42 78.6
Phvul.011G032100 Phaseolus vulgaris HOM05D005264 ORTHO05D005428 1.3e-12 77.0 42 78.6
Sabra10G0130200 Salix brachista HOM05D005264 ORTHO05D005428 1.3e-12 77.0 48 68.8
VMungo1127G0108 Vigna mungo HOM05D005264 ORTHO05D005428 1.3e-12 77.0 42 78.6
Aqoxy3G04289 Aquilegia oxysepala HOM05D005264 ORTHO05D005428 1.7e-12 76.6 45 73.3
CSS0010634 Camellia sinensis var. sinensis HOM05D005264 ORTHO05D005428 2.2e-12 76.3 41 80.5
CANSAT54G0937 Cannabis sativa HOM05D005264 ORTHO05D005428 2.2e-12 76.3 41 80.5
COL.COLO4_16614 Corchorus olitorius HOM05D005264 ORTHO05D005428 2.2e-12 76.3 41 80.5
MELO3C009842.2 Cucumis melo HOM05D005264 ORTHO05D005428 2.2e-12 76.3 41 80.5
CsaV3_3G041120 Cucumis sativus L. HOM05D005264 ORTHO05D005428 2.2e-12 76.3 41 80.5
Duzib248G0599 Durio zibethinus HOM05D005264 ORTHO05D005428 2.2e-12 76.3 41 80.5
Migut.J00716 Erythranthe guttata HOM05D005264 ORTHO05D005428 2.2e-12 76.3 42 78.6
PGR142G0147 Punica granatum HOM05D005264 ORTHO05D005428 2.2e-12 76.3 41 80.5
QL03p043270 Quercus lobata HOM05D005264 ORTHO05D005428 2.2e-12 76.3 41 80.5
Thecc.02G294900 Theobroma cacao HOM05D005264 ORTHO05D005428 2.2e-12 76.3 41 80.5
GSVIVG01010206001 Vitis vinifera HOM05D005264 ORTHO05D005428 2.2e-12 76.3 41 80.5
CAN.G624.19 Capsicum annuum HOM05D005264 ORTHO05D005428 2.8e-12 75.9 45 73.3
DCAR_030406 Daucus carota HOM05D005264 ORTHO05D005428 2.8e-12 75.9 45 75.6
Solyc11g040050.3 Solanum lycopersicum HOM05D005264 ORTHO05D005428 2.8e-12 75.9 45 73.3
Sopen11g017230 Solanum pennellii HOM05D005264 ORTHO05D005428 2.8e-12 75.9 45 73.3
PGSC0003DMG400018999 Solanum tuberosum HOM05D005264 ORTHO05D005428 2.8e-12 75.9 45 73.3
Cpa.g.sc393.4 Carica papaya HOM05D005264 ORTHO05D005428 4.8e-12 75.1 42 76.2
Oeu058145.2 Olea europaea HOM05D005264 ORTHO05D005428 4.8e-12 75.1 41 78.0
C01p30730 Brassica napus HOM05D000282 ORTHO05D000272 6.3e-12 74.7 33 97.0
Hma1.2p1_0285F.1_g113900 Hydrangea macrophylla HOM05D005264 ORTHO05D005428 6.3e-12 74.7 42 76.2
SGA_v2.0_scaffold42G15896 Striga asiatica HOM05D005264 ORTHO05D005428 8.2e-12 74.3 42 76.2
Atru.chr11.1210 Acer truncatum HOM05D005264 ORTHO05D005428 1.1e-11 73.9 41 78.0
Actinidia04317 Actinidia chinensis HOM05D005264 ORTHO05D005428 1.1e-11 73.9 41 80.5
Dinv03019 Davidia involucrata HOM05D005264 ORTHO05D005428 1.1e-11 73.9 41 78.0
SalBow1G6014 Salvia bowleyana HOM05D005264 ORTHO05D005428 1.1e-11 73.9 41 78.0
HanXRQChr03g0087681 Helianthus annuus HOM05D005264 ORTHO05D005428 7.0e-11 71.2 50 64.0
Cre07.g328400 Chlamydomonas reinhardtii HOM05D005264 ORTHO05D005428 9.1e-11 70.9 49 67.3
Gohir.D04G103133 Gossypium hirsutum HOM05D005264 ORTHO05D005428 6.1e-07 58.2 27 77.8
Dinv24635 Davidia involucrata HOM05D005264 ORTHO05D005428 1.4e-06 57.0 31 77.4
Glyma.01G117401 Glycine max HOM05D005264 ORTHO05D005428 1.4e-06 57.0 27 77.8
SEGI_41358 Sequoiadendron giganteum HOM05D005264 ORTHO05D005428 1.4e-06 57.0 27 81.5
Actinidia04089 Actinidia chinensis HOM05D005264 ORTHO05D005428 2.3e-06 56.2 30 70.0
Sc10g0006820 Simmondsia chinensis HOM05D005264 ORTHO05D005428 8.8e-06 54.3 27 74.1


User provided reference genes

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