Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p66780 Brassica napus HOM05D004774 ORTHO05D005514 5.6e-118 427.6 206 100.0
BraA09t42016Z Brassica rapa HOM05D004774 ORTHO05D005514 3.2e-113 411.8 236 87.3
BolC8t52628H Brassica oleracea HOM05D004774 ORTHO05D005514 3.5e-104 381.7 206 91.3
C08p51000 Brassica napus HOM05D004774 ORTHO05D005514 3.3e-102 375.2 213 88.7
BcaC07g42048 Brassica carinata HOM05D004774 ORTHO05D005514 1.1e-97 360.1 206 87.9
A08p35880 Brassica napus HOM05D004774 ORTHO05D005514 5.4e-97 357.8 203 83.3
C08p02690 Brassica napus HOM05D004774 ORTHO05D005514 1.2e-96 356.7 203 83.3
BolC8t47065H Brassica oleracea HOM05D004774 ORTHO05D005514 1.2e-96 356.7 203 83.3
BraA08t35495Z Brassica rapa HOM05D004774 ORTHO05D005514 1.8e-95 352.8 204 82.8
Sp1g05530 Schrenkiella parvula HOM05D004774 ORTHO05D005514 1.4e-89 333.2 204 79.4
Carub.0001s0611 Capsella rubella HOM05D004774 ORTHO05D005514 4.8e-85 318.2 198 78.8
Thhalv10028967m.g Eutrema salsugineum HOM05D004774 ORTHO05D005514 3.4e-83 312.0 205 75.6
AL1G16800 Arabidopsis lyrata HOM05D004774 ORTHO05D005514 7.6e-83 310.8 205 73.7
CARHR006490 Cardamine hirsuta HOM05D004774 ORTHO05D005514 3.8e-82 308.5 205 74.1
Aa31LG1G7840 Aethionema arabicum HOM05D004480 ORTHO05D005546 2.5e-81 305.8 206 72.8
AT1G06790 Arabidopsis thaliana HOM05D004774 ORTHO05D005514 7.2e-73 277.7 181 75.7
THA.LOC104815831 Tarenaya hassleriana HOM05D004774 ORTHO05D005514 2.1e-72 276.2 205 63.9
QL08p045287 Quercus lobata HOM05D004774 ORTHO05D005514 8.5e-66 254.2 198 59.6
GSVIVG01011075001 Vitis vinifera HOM05D004774 ORTHO05D005514 1.1e-65 253.8 193 59.1
Cc01_g18810 Coffea canephora HOM05D004774 ORTHO05D005514 2.5e-65 252.7 193 59.1
CiPaw.06G137100 Carya illinoinensis HOM05D004774 ORTHO05D005514 5.5e-65 251.5 198 58.1
Cpa.g.sc52.135 Carica papaya HOM05D004774 ORTHO05D005514 9.4e-65 250.8 198 59.1
Atru.chr5.1584 Acer truncatum HOM05D004774 ORTHO05D005514 1.2e-64 250.4 193 58.5
CANSAT35G0005 Cannabis sativa HOM05D004774 ORTHO05D005514 1.6e-64 250.0 193 58.0
Sopen07g002340 Solanum pennellii HOM05D004774 ORTHO05D005514 1.6e-64 250.0 193 59.6
GSVIVG01000730001 Vitis vinifera HOM05D004774 ORTHO05D005514 1.6e-64 250.0 193 58.0
Thecc.01G266900 Theobroma cacao HOM05D004774 ORTHO05D005514 2.1e-64 249.6 202 58.9
CAN.G1190.29 Capsicum annuum HOM05D004774 ORTHO05D005514 2.7e-64 249.2 193 60.1
Dinv40162 Davidia involucrata HOM05D004774 ORTHO05D005514 2.3e-63 246.1 193 58.0
Duzib138G0586 Durio zibethinus HOM05D004774 ORTHO05D005514 6.7e-63 244.6 202 57.9
TWI18G0081 Tripterygium wilfordii HOM05D004774 ORTHO05D005514 1.1e-62 243.8 202 55.0
Dinv22475 Davidia involucrata HOM05D004774 ORTHO05D005514 1.5e-62 243.4 193 57.5
TWI12G1255 Tripterygium wilfordii HOM05D004774 ORTHO05D005514 1.5e-62 243.4 202 55.0
Gohir.D07G215400 Gossypium hirsutum HOM05D004774 ORTHO05D005514 2.0e-62 243.0 212 55.2
Nitab4.5_0003289g0060 Nicotiana tabacum HOM05D004774 ORTHO05D005514 2.0e-62 243.0 194 58.2
Solyc07g006240.4 Solanum lycopersicum HOM05D004774 ORTHO05D005514 2.0e-62 243.0 199 57.8
Gohir.A07G209300 Gossypium hirsutum HOM05D004774 ORTHO05D005514 9.7e-62 240.7 212 55.2
Gorai.001G243200 Gossypium raimondii HOM05D004774 ORTHO05D005514 1.7e-61 240.0 212 54.7
TAR636G0805 Trochodendron aralioides HOM05D004774 ORTHO05D005514 1.8e-60 236.5 187 56.7
MSTRG.18290 Avicennia marina HOM05D004774 ORTHO05D005514 4.1e-60 235.3 203 54.7
Manes.01G201400 Manihot esculenta HOM05D004774 ORTHO05D005514 4.1e-60 235.3 204 57.8
MD08G1227600 Malus domestica HOM05D004774 ORTHO05D005514 1.2e-59 233.8 205 50.7
Nn4g23666 Nelumbo nucifera HOM05D004774 ORTHO05D005514 1.5e-59 233.4 193 54.9
Duzib211G0067 Durio zibethinus HOM05D004774 ORTHO05D005514 4.5e-59 231.9 201 54.7
Ciclev10023915m.g Citrus clementina HOM05D004774 ORTHO05D005514 7.7e-59 231.1 178 60.1
CSS0049587 Camellia sinensis var. sinensis HOM05D004774 ORTHO05D005514 1.0e-58 230.7 236 48.7
Prupe.2G103200 Prunus persica HOM05D004774 ORTHO05D005514 1.3e-58 230.3 207 51.2
EL10Ac3g05825 Beta vulgaris HOM05D004774 ORTHO05D005514 2.2e-58 229.6 193 55.4
Cfa005024 Carpinus fangiana HOM05D004774 ORTHO05D005514 8.5e-58 227.6 202 53.0
BcaC07g42538 Brassica carinata HOM05D004774 ORTHO05D005514 1.9e-57 226.5 126 88.1
COL.COLO4_05101 Corchorus olitorius HOM05D004774 ORTHO05D005514 1.9e-57 226.5 205 53.7
Lj4g0014477 Lotus japonicus HOM05D004774 ORTHO05D005514 4.2e-57 225.3 206 50.5
Duzib211G0109 Durio zibethinus HOM05D004774 ORTHO05D005514 7.2e-57 224.6 201 53.7
Potri.002G044500 Populus trichocarpa HOM05D004774 ORTHO05D005514 7.2e-57 224.6 194 54.6
Migut.D00377 Erythranthe guttata HOM05D004774 ORTHO05D005514 2.1e-56 223.0 200 52.5
ClCG09G004860 Citrullus lanatus HOM05D004774 ORTHO05D005514 4.7e-56 221.9 218 49.5
Nitab4.5_0001427g0080 Nicotiana tabacum HOM05D004774 ORTHO05D005514 1.0e-55 220.7 179 58.7
Sed0022653 Sechium edule HOM05D004774 ORTHO05D005514 1.0e-55 220.7 215 47.9
Phvul.010G020150 Phaseolus vulgaris HOM05D004774 ORTHO05D005514 1.4e-55 220.3 218 50.9
Phvul.010G020200 Phaseolus vulgaris HOM05D004774 ORTHO05D005514 1.4e-55 220.3 218 50.9
Lalb_Chr17g0348441 Lupinus albus HOM05D004774 ORTHO05D005514 1.8e-55 219.9 199 52.3
CsaV3_7G030220 Cucumis sativus L. HOM05D004774 ORTHO05D005514 2.3e-55 219.5 214 50.0
AUR62002186 Chenopodium quinoa HOM05D004774 ORTHO05D005514 8.8e-55 217.6 193 52.8
Lsat_1_v5_gn_5_176641 Lactuca sativa HOM05D004774 ORTHO05D005514 1.1e-54 217.2 194 49.5
vmacro02628 Vaccinium macrocarpon HOM05D004774 ORTHO05D005514 9.7e-54 214.2 233 48.1
PSO170G5180 Papaver somniferum HOM05D004774 ORTHO05D005514 3.7e-53 212.2 193 51.3
PSO017G6900 Papaver somniferum HOM05D004774 ORTHO05D005514 4.8e-53 211.8 193 51.3
MELO3C023634.2 Cucumis melo HOM05D004774 ORTHO05D005514 6.3e-53 211.5 220 47.7
VMungo0331G0358 Vigna mungo HOM05D002747 ORTHO05D005514 6.3e-53 211.5 218 49.5
Peaxi162Scf00934g00135 Petunia axillaris HOM05D004774 ORTHO05D005514 1.1e-52 210.7 192 52.6
SGA_v2.0_scaffold138G35272 Striga asiatica HOM05D004774 ORTHO05D005514 1.1e-52 210.7 222 48.6
Aqoxy7G03988 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 2.4e-52 209.5 193 51.3
PGSC0003DMG400011166 Solanum tuberosum HOM05D004774 ORTHO05D005514 2.4e-52 209.5 185 55.1
Glyma.19G215300 Glycine max HOM05D004774 ORTHO05D005514 4.1e-52 208.8 219 47.5
Ca_26554_v3 Cicer arietinum L. HOM05D004774 ORTHO05D005514 5.3e-52 208.4 197 49.7
Aqoxy1G01668 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 1.6e-51 206.8 193 50.8
Hma1.2p1_1029F.1_g249620 Hydrangea macrophylla HOM05D004774 ORTHO05D005514 1.6e-51 206.8 227 45.8
Hma1.2p1_1029F.1_g249641 Hydrangea macrophylla HOM05D004774 ORTHO05D005514 1.6e-51 206.8 227 45.8
Aqoxy4G03157 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 7.7e-51 204.5 193 50.3
MBI04_g06856_MAGBIO Magnolia biondii HOM05D004774 ORTHO05D005514 7.7e-51 204.5 193 50.3
Glyma.03G218500 Glycine max HOM05D004774 ORTHO05D005514 1.3e-50 203.8 219 47.0
Rhsim13G0031100 Rhododendron simsii HOM05D004774 ORTHO05D005514 1.3e-50 203.8 239 46.0
Psat3g097920 Pisum sativum HOM05D004774 ORTHO05D005514 2.9e-50 202.6 196 48.5
Eucgr.B01492 Eucalyptus grandis HOM05D004774 ORTHO05D005514 6.5e-50 201.4 190 51.6
SMO012G0037 Selaginella moellendorffii HOM05D004774 ORTHO05D005514 3.2e-49 199.1 193 49.2
AUR62015525 Chenopodium quinoa HOM05D004774 ORTHO05D005514 5.5e-49 198.4 179 54.2
DCAR_002682 Daucus carota HOM05D004774 ORTHO05D005514 7.2e-49 198.0 169 56.2
Sc04g0000740 Simmondsia chinensis HOM05D004774 ORTHO05D005514 7.2e-49 198.0 193 49.7
unitig_0.g1128 Utricularia gibba HOM05D004774 ORTHO05D005514 6.1e-48 194.9 260 40.0
Sabra02G0035700 Salix brachista HOM05D004774 ORTHO05D005514 8.0e-48 194.5 179 52.5
RcHm_v2.0_Chr5g0063451 Rosa chinensis HOM05D004774 ORTHO05D005514 2.3e-47 193.0 198 48.0
ECA247G2354 Erigeron canadensis HOM05D002220 ORTHO05D008182 3.0e-47 192.6 205 46.8
SEGI_34955 Sequoiadendron giganteum HOM05D004774 ORTHO05D005514 1.5e-46 190.3 204 44.1
Pp3c7_17850 Physcomitrium patens HOM05D004774 ORTHO05D005514 3.3e-46 189.1 194 47.9
Medtr8g072680 Medicago truncatula HOM05D004774 ORTHO05D005514 6.3e-45 184.9 196 45.9
AagrBONN_evm.TU.Sc2ySwM_344.4376 Anthoceros agrestis HOM05D004774 ORTHO05D005514 8.2e-45 184.5 193 45.6
VMungo1309G2525 Vigna mungo HOM05D004774 ORTHO05D005514 8.2e-45 184.5 192 49.0
HPP92_015388 Vanilla planifolia HOM05D004774 ORTHO05D005514 1.8e-44 183.3 194 45.9
FvH4_1g22880 Fragaria vesca HOM05D004774 ORTHO05D005514 4.1e-44 182.2 198 46.5
HPP92_027004 Vanilla planifolia HOM05D004774 ORTHO05D005514 4.1e-44 182.2 194 45.9
Mapoly0050s0102 Marchantia polymorpha HOM05D004774 ORTHO05D005514 1.6e-43 180.3 193 44.0
FAN19G2773 Fragaria x ananassa HOM05D004774 ORTHO05D005514 5.9e-43 178.3 198 46.0
FAN23G2064 Fragaria x ananassa HOM05D004774 ORTHO05D005514 6.5e-42 174.9 216 43.1
Os07g0477000 Oryza sativa ssp. japonica HOM05D004774 ORTHO05D005514 8.0e-40 167.9 203 42.9
SGA_v2.0_scaffold43G16236 Striga asiatica HOM05D004774 ORTHO05D005514 2.3e-39 166.4 171 47.4
Cre12.g538400 Chlamydomonas reinhardtii HOM05D004774 ORTHO05D005514 5.7e-38 161.8 208 41.8
Nn1g02575 Nelumbo nucifera HOM05D004774 ORTHO05D005514 2.2e-37 159.8 121 55.4
FAN26G2874 Fragaria x ananassa HOM05D004774 ORTHO05D005514 1.4e-36 157.1 178 45.5
Lj4A469T41 Lonicera japonica HOM05D004774 ORTHO05D005514 3.1e-36 156.0 135 55.6
SMO298G0040 Selaginella moellendorffii HOM05D004774 ORTHO05D005514 1.6e-35 153.7 194 43.8
MCO09G483 Micromonas commoda HOM05D004774 ORTHO05D005514 2.3e-34 149.8 206 39.3
PGR119G0353 Punica granatum HOM05D004774 ORTHO05D005514 8.6e-34 147.9 133 48.9
HanXRQChr14g0454071 Helianthus annuus HOM05D004774 ORTHO05D005514 1.1e-33 147.5 141 47.5
Ca_27275_v3 Cicer arietinum L. HOM05D004774 ORTHO05D005514 5.5e-33 145.2 150 47.3
PSO339G5528 Papaver somniferum HOM05D004774 ORTHO05D005514 9.5e-33 144.4 144 47.2
SHI09938 Sapria himalayana HOM05D004774 ORTHO05D000023 2.6e-30 136.3 129 51.9
CDE07G1842 Ceratophyllum demersum HOM05D004774 ORTHO05D005514 1.1e-28 131.0 193 39.4
CDE07G0321 Ceratophyllum demersum HOM05D004774 ORTHO05D005514 2.3e-26 123.2 199 37.2
arahy.Tifrunner.gnm1.ann1.SKV00U Arachis hypogaea HOM05D004774 ORTHO05D005514 5.0e-26 122.1 100 51.0
Zm00001eb319960 Zea mays HOM05D004774 ORTHO05D005514 6.1e-24 115.2 114 48.2
Aqoxy7G03987 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 4.0e-23 112.5 98 52.0
FAN11G3419 Fragaria x ananassa HOM05D004774 ORTHO05D005514 5.2e-23 112.1 140 39.3
ATR0665G644 Amborella trichopoda HOM05D004774 ORTHO05D005514 2.0e-22 110.2 98 51.0
TPR.G27929 Trifolium pratense HOM05D004774 ORTHO05D005514 9.2e-20 101.3 104 47.1
arahy.Tifrunner.gnm1.ann1.KW6T12 Arachis hypogaea HOM05D004774 ORTHO05D005514 1.2e-19 100.9 94 50.0
SEGI_28935 Sequoiadendron giganteum HOM05D004774 ORTHO05D005514 6.6e-18 95.1 103 40.8
FAN21G2916 Fragaria x ananassa HOM05D004774 ORTHO05D005514 1.9e-17 93.6 101 46.5
BolC8t46832H Brassica oleracea HOM05D004774 ORTHO05D005514 4.3e-17 92.4 72 65.3
GSVIVG01021945001 Vitis vinifera HOM05D004774 ORTHO05D005514 1.6e-16 90.5 98 49.0
Prupe.7G016800 Prunus persica HOM05D004774 ORTHO05D005514 2.8e-16 89.7 106 42.5
A03p16490 Brassica napus HOM05D037327 ORTHO05D005514 1.5e-14 84.0 47 78.7
TPR.G27925 Trifolium pratense HOM05D004774 ORTHO05D005514 1.5e-14 84.0 62 51.6
Ah.11g042480 Amaranthus hybridus HOM05D004774 ORTHO05D005514 2.0e-14 83.6 67 52.2
BolC1t02432H Brassica oleracea HOM05D004774 ORTHO05D033846 2.6e-14 83.2 49 81.6
Haze_02361 Corylus avellana HOM05D004774 ORTHO05D005514 2.6e-14 83.2 67 58.2
C08p41270 Brassica napus HOM05D004774 ORTHO05D005514 5.8e-14 82.0 49 79.6
FvH4_3g35340 Fragaria vesca HOM05D004774 ORTHO05D005514 9.8e-14 81.3 103 39.8
GSVIVG01000732001 Vitis vinifera HOM05D004774 ORTHO05D005514 1.3e-13 80.9 68 52.9
Haze_02362 Corylus avellana HOM05D004774 ORTHO05D005514 2.9e-13 79.7 70 55.7
PRCOL_00000420 Prasinoderma coloniale HOM05D004385 ORTHO05D005245 6.4e-13 78.6 155 32.9
TPR.G26057 Trifolium pratense HOM05D004774 ORTHO05D005514 1.4e-12 77.4 63 50.8
C01p24870 Brassica napus HOM05D041306 ORTHO05D005514 2.0e-11 73.6 49 73.5
GSVIVG01000731001 Vitis vinifera HOM05D004774 ORTHO05D005514 2.7e-11 73.2 75 52.0
GSVIVG01021951001 Vitis vinifera HOM05D004774 ORTHO05D005514 6.0e-11 72.0 101 42.6
CBR_g31683 Chara braunii HOM05D004774 ORTHO05D005514 3.0e-10 69.7 118 32.2
GSVIVG01000736001 Vitis vinifera HOM05D004774 ORTHO05D005514 3.0e-10 69.7 45 62.2
C02p58710 Brassica napus HOM05D041306 ORTHO05D005514 5.0e-10 68.9 49 67.3
TPR.G27610 Trifolium pratense HOM05D004774 ORTHO05D005514 1.5e-09 67.4 68 50.0
MD02G1234500 Malus domestica HOM05D004774 ORTHO05D005514 5.6e-09 65.5 40 70.0
BraA04t17771Z Brassica rapa HOM05D037327 ORTHO05D041949 1.6e-08 63.9 35 80.0
Lj4A469T40 Lonicera japonica HOM05D004774 ORTHO05D005514 1.6e-08 63.9 43 65.1
GSVIVG01004486001 Vitis vinifera HOM05D004774 ORTHO05D005514 3.6e-08 62.8 71 42.3
GSVIVG01018600001 Vitis vinifera HOM05D004774 ORTHO05D005514 4.4e-06 55.8 54 46.3


User provided reference genes

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