Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p58500 Brassica napus HOM05D005339 ORTHO05D006561 1.3e-175 619.8 344 100.0
C08p41800 Brassica napus HOM05D005339 ORTHO05D006561 7.1e-166 587.4 347 96.5
BcaB08g34965 Brassica carinata HOM05D005339 ORTHO05D006561 1.1e-163 580.1 344 95.1
BolC8t51743H Brassica oleracea HOM05D005339 ORTHO05D006561 1.2e-162 576.6 347 94.5
BraA09t41237Z Brassica rapa HOM05D005339 ORTHO05D006561 1.3e-159 566.6 373 88.2
Thhalv10000232m.g Eutrema salsugineum HOM05D005339 ORTHO05D006561 3.7e-159 565.1 346 91.9
AT2G21150 Arabidopsis thaliana HOM05D005339 ORTHO05D006561 8.3e-159 563.9 346 90.2
BcaC07g41172 Brassica carinata HOM05D005339 ORTHO05D006561 8.3e-159 563.9 338 95.9
AL4G10240 Arabidopsis lyrata HOM05D005339 ORTHO05D006561 1.4e-158 563.1 346 89.6
Sp4g00300 Schrenkiella parvula HOM05D005339 ORTHO05D006561 1.4e-158 563.1 346 92.5
Carub.0004s0017 Capsella rubella HOM05D005339 ORTHO05D006561 7.1e-158 560.8 346 89.6
C04p50370 Brassica napus HOM05D005339 ORTHO05D006561 1.6e-157 559.7 345 91.3
BolC4t26635H Brassica oleracea HOM05D005339 ORTHO05D006561 1.6e-157 559.7 345 91.3
Aa31LG7G15530 Aethionema arabicum HOM05D005339 ORTHO05D006561 1.0e-148 530.4 339 90.3
THA.LOC104807785 Tarenaya hassleriana HOM05D005339 ORTHO05D006561 6.6e-148 527.7 346 87.0
Thecc.02G066900 Theobroma cacao HOM05D005339 ORTHO05D006561 8.1e-146 520.8 346 85.0
Eucgr.I01375 Eucalyptus grandis HOM05D005339 ORTHO05D006561 1.2e-144 516.9 346 83.8
arahy.Tifrunner.gnm1.ann1.UV505Z Arachis hypogaea HOM05D005339 ORTHO05D006561 2.0e-144 516.2 353 82.4
CsaV3_2G015710 Cucumis sativus L. HOM05D005339 ORTHO05D006561 2.0e-144 516.2 344 84.3
Hund06405 Selenicereus undatus HOM05D005339 ORTHO05D006561 2.6e-144 515.8 344 83.1
Potri.009G129700 Populus trichocarpa HOM05D005339 ORTHO05D006561 9.9e-144 513.8 346 84.7
ClCG02G011380 Citrullus lanatus HOM05D005339 ORTHO05D006561 1.7e-143 513.1 344 84.0
Prupe.7G010600 Prunus persica HOM05D005339 ORTHO05D006561 1.7e-143 513.1 346 84.1
Gohir.A03G203200 Gossypium hirsutum HOM05D005339 ORTHO05D006561 4.9e-143 511.5 346 84.4
Gorai.005G252300 Gossypium raimondii HOM05D005339 ORTHO05D006561 4.9e-143 511.5 346 84.4
GSVIVG01024083001 Vitis vinifera HOM05D005339 ORTHO05D006561 4.9e-143 511.5 344 83.4
Actinidia20485 Actinidia chinensis HOM05D005339 ORTHO05D006561 6.4e-143 511.1 345 83.2
Manes.04G078200 Manihot esculenta HOM05D005339 ORTHO05D006561 1.4e-142 510.0 345 84.1
arahy.Tifrunner.gnm1.ann1.RMHT0B Arachis hypogaea HOM05D005339 ORTHO05D006561 2.4e-142 509.2 344 83.1
A04p15920 Brassica napus HOM05D005339 ORTHO05D006561 2.4e-142 509.2 344 86.6
Sabra04G0112800 Salix brachista HOM05D005339 ORTHO05D006561 4.2e-142 508.4 346 83.5
ATR0810G182 Amborella trichopoda HOM05D005339 ORTHO05D006561 5.4e-142 508.1 345 82.6
Glyma.08G042200 Glycine max HOM05D005339 ORTHO05D006561 7.1e-142 507.7 347 82.7
Gohir.D02G224500 Gossypium hirsutum HOM05D005339 ORTHO05D006561 7.1e-142 507.7 346 83.8
Lalb_Chr11g0072011 Lupinus albus HOM05D005339 ORTHO05D006561 7.1e-142 507.7 345 83.5
Potri.004G168400 Populus trichocarpa HOM05D005339 ORTHO05D006561 9.3e-142 507.3 346 83.8
CANSAT25G3263 Cannabis sativa HOM05D005339 ORTHO05D006561 1.6e-141 506.5 345 83.5
Glyma.05G234700 Glycine max HOM05D005339 ORTHO05D006561 1.6e-141 506.5 345 83.2
Rhsim11G0187800 Rhododendron simsii HOM05D005339 ORTHO05D006561 1.6e-141 506.5 346 83.2
CSS0049457 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 2.1e-141 506.1 346 81.8
Ciclev10028803m.g Citrus clementina HOM05D005339 ORTHO05D006561 2.7e-141 505.8 345 78.8
Cfa005184 Carpinus fangiana HOM05D005339 ORTHO05D006561 4.6e-141 505.0 344 81.7
PGSC0003DMG400001633 Solanum tuberosum HOM05D005339 ORTHO05D006561 2.3e-140 502.7 345 82.3
Aqoxy5G01796 Aquilegia oxysepala HOM05D005339 ORTHO05D006561 3.0e-140 502.3 348 82.8
Psat7g008680 Pisum sativum HOM05D005339 ORTHO05D006561 3.0e-140 502.3 349 81.7
Hma1.2p1_0032F.1_g019680 Hydrangea macrophylla HOM05D005339 ORTHO05D006561 6.6e-140 501.1 346 82.1
RcHm_v2.0_Chr2g0122771 Rosa chinensis HOM05D005339 ORTHO05D006561 6.6e-140 501.1 346 82.1
Duzib132G0613 Durio zibethinus HOM05D005339 ORTHO05D006561 8.7e-140 500.7 358 81.8
PGR142G1539 Punica granatum HOM05D005339 ORTHO05D006561 1.1e-139 500.4 344 81.4
CiPaw.05G077200 Carya illinoinensis HOM05D005339 ORTHO05D006561 1.5e-139 500.0 346 82.7
Sed0019675 Sechium edule HOM05D005339 ORTHO05D006561 1.5e-139 500.0 344 81.4
CAN.G588.26 Capsicum annuum HOM05D005339 ORTHO05D006561 2.5e-139 499.2 345 83.2
Migut.B00167 Erythranthe guttata HOM05D005339 ORTHO05D006561 3.3e-139 498.8 347 81.8
TWI31G0803 Tripterygium wilfordii HOM05D005339 ORTHO05D006561 7.3e-139 497.7 344 82.6
Medtr8g105120 Medicago truncatula HOM05D005339 ORTHO05D006561 9.6e-139 497.3 348 81.0
QL11p047539 Quercus lobata HOM05D005339 ORTHO05D006561 1.3e-138 496.9 344 82.0
QL11p047573 Quercus lobata HOM05D005339 ORTHO05D006561 1.3e-138 496.9 344 82.0
vmacro02249 Vaccinium macrocarpon HOM05D005339 ORTHO05D006561 1.6e-138 496.5 345 82.9
Atru.chr5.3227 Acer truncatum HOM05D005339 ORTHO05D006561 3.6e-138 495.4 344 83.1
MD14G1006100 Malus domestica HOM05D005339 ORTHO05D006561 8.1e-138 494.2 346 80.9
Phvul.002G320300 Phaseolus vulgaris HOM05D005339 ORTHO05D006561 8.1e-138 494.2 348 82.5
Peaxi162Scf00362g01036 Petunia axillaris HOM05D005339 ORTHO05D006561 3.1e-137 492.3 345 82.3
CDE04G0258 Ceratophyllum demersum HOM05D005339 ORTHO05D006561 4.0e-137 491.9 346 80.3
Cc11_g02780 Coffea canephora HOM05D005339 ORTHO05D006561 4.0e-137 491.9 346 81.2
PSO700G0269 Papaver somniferum HOM05D005339 ORTHO05D006561 4.0e-137 491.9 346 80.3
AUR62010093 Chenopodium quinoa HOM05D005339 ORTHO05D006561 5.3e-137 491.5 344 78.8
Nitab4.5_0000283g0140 Nicotiana tabacum HOM05D005339 ORTHO05D006561 5.3e-137 491.5 345 82.3
Nitab4.5_0000980g0240 Nicotiana tabacum HOM05D005339 ORTHO05D006561 5.3e-137 491.5 345 82.3
Solyc01g111140.3 Solanum lycopersicum HOM05D005339 ORTHO05D006561 6.9e-137 491.1 345 82.3
Sopen01g053200 Solanum pennellii HOM05D005339 ORTHO05D006561 6.9e-137 491.1 345 82.3
CDE02G2588 Ceratophyllum demersum HOM05D005339 ORTHO05D006561 9.0e-137 490.7 345 74.2
VMungo0251G0038 Vigna mungo HOM05D005339 ORTHO05D006561 1.5e-136 490.0 348 82.2
PSO170G1371 Papaver somniferum HOM05D005339 ORTHO05D006561 2.0e-136 489.6 346 80.1
HanXRQChr15g0478851 Helianthus annuus HOM05D005339 ORTHO05D006561 4.5e-136 488.4 344 81.4
Zm00001eb103630 Zea mays HOM05D005339 ORTHO05D006561 4.5e-136 488.4 344 81.1
CiPaw.06G125300 Carya illinoinensis HOM05D005339 ORTHO05D006561 1.7e-135 486.5 346 81.2
MD12G1008800 Malus domestica HOM05D005339 ORTHO05D006561 3.8e-135 485.3 346 79.8
Os09g0535300 Oryza sativa ssp. japonica HOM05D005339 ORTHO05D006561 3.8e-135 485.3 346 80.3
SGA_v2.0_scaffold58G20457 Striga asiatica HOM05D005339 ORTHO05D006561 3.8e-135 485.3 367 78.2
MBI19_g09243_MAGBIO Magnolia biondii HOM05D005339 ORTHO05D006561 1.1e-134 483.8 373 74.5
DCAR_022955 Daucus carota HOM05D005339 ORTHO05D006561 2.4e-134 482.6 363 77.1
DCAR_022956 Daucus carota HOM05D005339 ORTHO05D006561 2.4e-134 482.6 363 77.1
Sabra09G0099200 Salix brachista HOM05D005339 ORTHO05D006561 9.3e-134 480.7 381 75.1
ECA246G3996 Erigeron canadensis HOM05D005339 ORTHO05D006561 2.1e-133 479.6 337 82.2
BraA04t17225Z Brassica rapa HOM05D005339 ORTHO05D006561 2.7e-133 479.2 524 60.5
Oeu055639.3 Olea europaea HOM05D005339 ORTHO05D006561 2.7e-133 479.2 344 81.1
LjContig00310g0009118 Lotus japonicus HOM05D005339 ORTHO05D006561 1.3e-132 476.9 345 80.3
Dinv41975 Davidia involucrata HOM05D005339 ORTHO05D006561 1.8e-132 476.5 344 81.1
unitig_744.g24266 Utricularia gibba HOM05D005339 ORTHO05D006561 6.7e-132 474.6 360 76.9
Nn7g36850 Nelumbo nucifera HOM05D005339 ORTHO05D006561 2.5e-131 472.6 330 81.5
Pp3c17_13560 Physcomitrium patens HOM05D005339 ORTHO05D006561 2.5e-131 472.6 348 75.0
FvH4_1g25110 Fragaria vesca HOM05D005339 ORTHO05D006561 3.3e-131 472.2 345 79.1
Ah.01g009160 Amaranthus hybridus HOM05D005339 ORTHO05D006561 5.6e-131 471.5 344 78.2
AagrBONN_evm.TU.Sc2ySwM_344.4430 Anthoceros agrestis HOM05D005339 ORTHO05D006561 2.8e-130 469.2 345 78.3
Mapoly0015s0022 Marchantia polymorpha HOM05D005339 ORTHO05D006561 4.8e-130 468.4 344 73.3
SalBow6G1349 Salvia bowleyana HOM05D005339 ORTHO05D006561 4.8e-130 468.4 356 77.5
SMO117G0089 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 4.8e-130 468.4 348 77.6
Lj4g0026543 Lotus japonicus HOM05D005339 ORTHO05D006561 5.3e-129 464.9 329 81.2
Lalb_Chr23g0275171 Lupinus albus HOM05D005339 ORTHO05D006561 2.6e-128 462.6 329 81.5
Ca_17265_v3 Cicer arietinum L. HOM05D005339 ORTHO05D006561 1.4e-126 456.8 333 80.5
Ca_17286_v3 Cicer arietinum L. HOM05D005339 ORTHO05D006561 1.4e-126 456.8 333 80.5
Lj9C389T6 Lonicera japonica HOM05D005339 ORTHO05D006561 1.6e-125 453.4 386 70.2
FAN23G1071 Fragaria x ananassa HOM05D005339 ORTHO05D006561 1.1e-123 447.2 346 76.0
FAN28G0542 Fragaria x ananassa HOM05D005339 ORTHO05D006561 4.3e-123 445.3 367 72.2
FAN28G2786 Fragaria x ananassa HOM05D005339 ORTHO05D006561 4.3e-123 445.3 367 72.2
AUR62013089 Chenopodium quinoa HOM05D005339 ORTHO05D006561 2.8e-122 442.6 344 73.8
TAR376G0223 Trochodendron aralioides HOM05D005339 ORTHO05D006561 6.2e-122 441.4 315 83.5
Haze_02197 Corylus avellana HOM05D005339 ORTHO05D006561 1.8e-121 439.9 344 67.7
EL10Ac9g21438 Beta vulgaris HOM05D005339 ORTHO05D006561 8.7e-116 421.0 355 71.8
TPR.G17076 Trifolium pratense HOM05D005339 ORTHO05D006561 9.7e-115 417.5 292 81.2
Lsat_1_v5_gn_3_45301 Lactuca sativa HOM05D005339 ORTHO05D006561 8.5e-111 404.4 342 72.8
Sc08g0003210 Simmondsia chinensis HOM05D005339 ORTHO05D006561 9.1e-105 384.4 232 81.9
Manes.11G090000 Manihot esculenta HOM05D005339 ORTHO05D006561 9.4e-102 374.4 283 80.6
FAN19G3054 Fragaria x ananassa HOM05D005339 ORTHO05D006561 4.8e-98 362.1 347 67.7
Cpa.g.sc37.191 Carica papaya HOM05D005339 ORTHO05D006561 9.4e-94 347.8 330 67.6
COL.COLO4_17257 Corchorus olitorius HOM05D005339 ORTHO05D003646 4.7e-93 345.5 327 67.9
FAN26G3137 Fragaria x ananassa HOM05D005339 ORTHO05D006561 1.8e-92 343.6 344 63.1
MELO3C020783.2 Cucumis melo HOM05D005339 ORTHO05D006561 1.1e-91 340.9 262 80.2
Pp3c2_11550 Physcomitrium patens HOM05D005339 ORTHO05D006561 1.2e-88 330.9 285 69.1
HPP92_028582 Vanilla planifolia HOM05D005339 ORTHO05D006561 2.7e-88 329.7 344 61.6
Cre07.g341300 Chlamydomonas reinhardtii HOM05D005339 ORTHO05D006561 8.8e-84 314.7 389 46.3
MCO15G465 Micromonas commoda HOM05D005339 ORTHO05D006561 3.8e-79 299.3 337 52.2
VMungo0251G1189 Vigna mungo HOM05D005339 ORTHO05D006561 2.5e-78 296.6 154 90.9
QL11p047601 Quercus lobata HOM05D005339 ORTHO05D006561 3.3e-62 243.0 190 66.8
PRCOL_00006995 Prasinoderma coloniale HOM05D005339 ORTHO05D006561 6.8e-60 235.3 333 45.9
SEGI_00782 Sequoiadendron giganteum HOM05D005339 ORTHO05D006561 1.7e-58 230.7 211 71.6
CARHR112000 Cardamine hirsuta HOM05D005339 ORTHO05D006561 3.9e-55 219.5 165 77.6
CBR_g47091 Chara braunii HOM05D005339 ORTHO05D006561 3.6e-53 213.0 139 74.1
CSS0019608 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 4.4e-43 179.5 82 97.6
CSS0027179 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 1.4e-36 157.9 98 82.7
Actinidia00595 Actinidia chinensis HOM05D005339 ORTHO05D006561 1.2e-32 144.8 89 86.5
VMungo0251G1261 Vigna mungo HOM05D005339 ORTHO05D006561 3.9e-31 139.8 89 82.0
TPR.G35331 Trifolium pratense HOM05D005339 ORTHO05D006561 9.6e-22 108.6 55 90.9
MCO03G074 Micromonas commoda HOM05D005339 ORTHO05D006561 1.5e-19 101.3 203 29.6
Phvul.002G320400 Phaseolus vulgaris HOM05D005339 ORTHO05D006561 4.5e-19 99.8 327 28.7
Cfa025584 Carpinus fangiana HOM05D005339 ORTHO05D006561 5.5e-17 92.8 276 27.5
SMO274G0062 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 1.5e-14 84.7 64 64.1
RcHm_v2.0_Chr5g0045021 Rosa chinensis HOM05D005339 ORTHO05D006561 6.2e-13 79.3 39 89.7
SMO301G0014 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 9.0e-12 75.5 54 68.5
TPR.G17724 Trifolium pratense HOM05D005339 ORTHO05D006561 9.0e-12 75.5 41 90.2
CSS0035622 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 2.2e-10 70.9 87 71.3
Actinidia00596 Actinidia chinensis HOM05D003396 ORTHO05D003646 3.8e-10 70.1 45 73.3
Migut.O00339 Erythranthe guttata HOM05D005339 ORTHO05D006561 6.5e-10 69.3 30 93.3


User provided reference genes

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