Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g42429 Brassica carinata HOM05D006029 ORTHO05D007439 8.1e-57 223.4 104 100.0
A03p11160 Brassica napus HOM05D000069 ORTHO05D021930 8.1e-57 223.4 104 100.0
A09p39050 Brassica napus HOM05D006029 ORTHO05D007439 8.1e-57 223.4 104 100.0
A09p68990 Brassica napus HOM05D006029 ORTHO05D007439 8.1e-57 223.4 104 100.0
BolC3t13750H Brassica oleracea HOM05D006029 ORTHO05D007439 8.1e-57 223.4 104 100.0
BolC8t52870H Brassica oleracea HOM05D006029 ORTHO05D007439 8.1e-57 223.4 104 100.0
BraA03t10431Z Brassica rapa HOM05D006029 ORTHO05D007439 8.1e-57 223.4 104 100.0
BraA09t42236Z Brassica rapa HOM05D006029 ORTHO05D007439 8.1e-57 223.4 104 100.0
BraA09t39405Z Brassica rapa HOM05D006029 ORTHO05D007439 2.4e-56 221.9 104 99.0
C03p12870 Brassica napus HOM05D006029 ORTHO05D007439 6.8e-56 220.3 104 99.0
Sp1g01080 Schrenkiella parvula HOM05D006029 ORTHO05D007439 2.5e-50 201.8 104 89.4
Thhalv10009170m.g Eutrema salsugineum HOM05D006029 ORTHO05D007439 7.3e-50 200.3 104 88.5
AT4G07950 Arabidopsis thaliana HOM05D006029 ORTHO05D007439 9.0e-48 193.4 107 85.0
AL1G11270 Arabidopsis lyrata HOM05D006029 ORTHO05D007439 1.5e-47 192.6 107 84.1
Carub.0003s3000 Capsella rubella HOM05D006029 ORTHO05D007439 4.4e-47 191.0 107 85.0
AT1G01210 Arabidopsis thaliana HOM05D006029 ORTHO05D007439 9.9e-47 189.9 107 84.1
CARHR001260 Cardamine hirsuta HOM05D006029 ORTHO05D007439 2.2e-46 188.7 107 83.2
THA.LOC104815886 Tarenaya hassleriana HOM05D006029 ORTHO05D007439 3.2e-45 184.9 107 81.3
Aa31LG1G10580 Aethionema arabicum HOM05D006029 ORTHO05D007439 1.4e-40 169.5 108 74.1
vmacro12594 Vaccinium macrocarpon HOM05D006029 ORTHO05D007439 1.0e-30 136.7 112 58.0
arahy.Tifrunner.gnm1.ann1.A8XVJK Arachis hypogaea HOM05D006029 ORTHO05D007439 1.3e-30 136.3 112 55.4
arahy.Tifrunner.gnm1.ann1.ZU3BRN Arachis hypogaea HOM05D006029 ORTHO05D007439 1.3e-30 136.3 112 55.4
COL.COLO4_06245 Corchorus olitorius HOM05D006029 ORTHO05D007439 3.8e-30 134.8 111 55.9
Rhsim01G0175700 Rhododendron simsii HOM05D006029 ORTHO05D007439 3.8e-30 134.8 112 57.1
Gohir.D08G145300 Gossypium hirsutum HOM05D006029 ORTHO05D007439 4.9e-30 134.4 111 55.9
Gorai.004G150300 Gossypium raimondii HOM05D006029 ORTHO05D007439 1.1e-29 133.3 111 55.0
Gohir.A08G124200 Gossypium hirsutum HOM05D006029 ORTHO05D007439 1.4e-29 132.9 111 55.0
Glyma.18G179600 Glycine max HOM05D006029 ORTHO05D007439 3.2e-29 131.7 110 54.5
Gohir.D12G270400 Gossypium hirsutum HOM05D006029 ORTHO05D007439 3.2e-29 131.7 111 54.1
Gorai.008G290700 Gossypium raimondii HOM05D006029 ORTHO05D007439 3.2e-29 131.7 111 54.1
Phvul.008G101000 Phaseolus vulgaris HOM05D006029 ORTHO05D007439 7.1e-29 130.6 112 53.6
Duzib138G0795 Durio zibethinus HOM05D006029 ORTHO05D007439 1.2e-28 129.8 111 55.0
MD01G1085300 Malus domestica HOM05D006029 ORTHO05D007439 1.6e-28 129.4 107 54.2
Glyma.07G131200 Glycine max HOM05D006029 ORTHO05D007439 2.1e-28 129.0 110 54.5
Gohir.A12G269900 Gossypium hirsutum HOM05D006029 ORTHO05D007439 2.1e-28 129.0 111 54.1
Cc06_g21100 Coffea canephora HOM05D006029 ORTHO05D007439 2.7e-28 128.6 111 54.1
Psat3g005240 Pisum sativum HOM05D006029 ORTHO05D007439 2.7e-28 128.6 110 52.7
Lalb_Chr04g0261421 Lupinus albus HOM05D006029 ORTHO05D007439 4.6e-28 127.9 112 51.8
Cc00_g02440 Coffea canephora HOM05D006029 ORTHO05D007439 1.0e-27 126.7 111 53.2
GSVIVG01027190001 Vitis vinifera HOM05D006029 ORTHO05D007439 1.0e-27 126.7 112 53.6
CANSAT56G3403 Cannabis sativa HOM05D006029 ORTHO05D007439 1.3e-27 126.3 110 50.9
CiPaw.02G042300 Carya illinoinensis HOM05D006029 ORTHO05D007439 1.3e-27 126.3 112 51.8
Lj1g0014790 Lotus japonicus HOM05D006029 ORTHO05D007439 2.3e-27 125.6 112 52.7
Lj1g0022243 Lotus japonicus HOM05D006029 ORTHO05D007439 2.3e-27 125.6 112 52.7
ClCG10G013250 Citrullus lanatus HOM05D006029 ORTHO05D007439 3.9e-27 124.8 112 50.0
HanXRQChr05g0130881 Helianthus annuus HOM05D006029 ORTHO05D007439 3.9e-27 124.8 111 52.3
Thecc.01G338500 Theobroma cacao HOM05D006029 ORTHO05D007439 3.9e-27 124.8 113 52.2
MELO3C026899.2 Cucumis melo HOM05D006029 ORTHO05D007439 5.1e-27 124.4 112 50.0
CsaV3_3G043380 Cucumis sativus L. HOM05D006029 ORTHO05D007439 5.1e-27 124.4 112 50.0
Eucgr.E03439 Eucalyptus grandis HOM05D006029 ORTHO05D007439 5.1e-27 124.4 113 53.1
Eucgr.E03441 Eucalyptus grandis HOM05D006029 ORTHO05D007439 5.1e-27 124.4 113 53.1
Eucgr.E03442 Eucalyptus grandis HOM05D006029 ORTHO05D007439 5.1e-27 124.4 113 53.1
Eucgr.L01751 Eucalyptus grandis HOM05D006029 ORTHO05D007439 5.1e-27 124.4 113 53.1
Lsat_1_v5_gn_4_30800 Lactuca sativa HOM05D006029 ORTHO05D007439 1.1e-26 123.2 111 52.3
TPR.G4810 Trifolium pratense HOM05D006029 ORTHO05D007439 1.1e-26 123.2 107 50.5
TWI36G0126 Tripterygium wilfordii HOM05D006029 ORTHO05D007439 1.5e-26 122.9 112 50.9
Hma1.2p1_1482F.1_g286210 Hydrangea macrophylla HOM05D006029 ORTHO05D007439 2.5e-26 122.1 112 53.6
Sed0007850 Sechium edule HOM05D006029 ORTHO05D007439 3.3e-26 121.7 112 50.9
Prupe.2G192900 Prunus persica HOM05D006029 ORTHO05D007439 4.3e-26 121.3 107 50.5
Cfa010653 Carpinus fangiana HOM05D006029 ORTHO05D007439 7.4e-26 120.6 112 49.1
PGR102G2016 Punica granatum HOM05D006029 ORTHO05D007439 9.6e-26 120.2 113 52.2
Manes.01G243500 Manihot esculenta HOM05D006029 ORTHO05D007439 1.3e-25 119.8 113 54.9
Carub.0003s3001 Capsella rubella HOM05D003869 ORTHO05D004718 2.1e-25 119.0 69 81.2
Sed0019070 Sechium edule HOM05D006029 ORTHO05D007439 2.1e-25 119.0 112 48.2
TAR374G1259 Trochodendron aralioides HOM05D006029 ORTHO05D007439 2.1e-25 119.0 112 51.8
Nn1g00349 Nelumbo nucifera HOM05D006029 ORTHO05D007439 2.8e-25 118.6 113 52.2
Sabra12G0016400 Salix brachista HOM05D006029 ORTHO05D007439 6.2e-25 117.5 113 52.2
PSO170G0977 Papaver somniferum HOM05D006029 ORTHO05D007439 8.2e-25 117.1 111 49.5
Peaxi162Scf00156g00617 Petunia axillaris HOM05D006029 ORTHO05D007439 8.2e-25 117.1 112 49.1
Cpa.g.sc96.66 Carica papaya HOM05D006029 ORTHO05D007439 1.1e-24 116.7 111 52.3
unitig_60.g25801 Utricularia gibba HOM05D006029 ORTHO05D007439 1.4e-24 116.3 110 50.9
Potri.012G015900 Populus trichocarpa HOM05D006029 ORTHO05D007439 1.8e-24 115.9 113 53.1
DCAR_006981 Daucus carota HOM05D006425 ORTHO05D007312 3.1e-24 115.2 112 50.9
RcHm_v2.0_Chr1g0360471 Rosa chinensis HOM05D006029 ORTHO05D007439 5.3e-24 114.4 107 46.7
PSO782G1905 Papaver somniferum HOM05D006029 ORTHO05D007439 6.9e-24 114.0 111 47.7
PSO782G2649 Papaver somniferum HOM05D006029 ORTHO05D007439 6.9e-24 114.0 111 47.7
PSO782G4464 Papaver somniferum HOM05D006029 ORTHO05D007439 6.9e-24 114.0 111 47.7
CSS0011460 Camellia sinensis var. sinensis HOM05D006029 ORTHO05D007439 9.0e-24 113.6 91 57.1
Oeu043218.1 Olea europaea HOM05D006029 ORTHO05D007439 1.2e-23 113.2 112 48.2
MSTRG.17362 Avicennia marina HOM05D006029 ORTHO05D007439 3.4e-23 111.7 111 49.5
Haze_03591 Corylus avellana HOM05D004263 ORTHO05D004931 3.4e-23 111.7 97 51.5
FvH4_7g17060 Fragaria vesca HOM05D006029 ORTHO05D007439 4.5e-23 111.3 107 44.9
FAN01G1288 Fragaria x ananassa HOM05D006029 ORTHO05D007439 4.5e-23 111.3 107 44.9
FAN03G2913 Fragaria x ananassa HOM05D006029 ORTHO05D007439 4.5e-23 111.3 107 44.9
FAN06G2526 Fragaria x ananassa HOM05D006029 ORTHO05D007439 4.5e-23 111.3 107 44.9
FAN06G3186 Fragaria x ananassa HOM05D006029 ORTHO05D007439 4.5e-23 111.3 107 44.9
FAN10G2808 Fragaria x ananassa HOM05D006029 ORTHO05D007439 4.5e-23 111.3 107 44.9
FAN10G3748 Fragaria x ananassa HOM05D006029 ORTHO05D007439 4.5e-23 111.3 107 44.9
Medtr5g030180 Medicago truncatula HOM05D006029 ORTHO05D007439 7.6e-23 110.5 115 44.3
Medtr7g116750 Medicago truncatula HOM05D006029 ORTHO05D007439 7.6e-23 110.5 116 45.7
Sc02g0002910 Simmondsia chinensis HOM05D006029 ORTHO05D007439 1.0e-22 110.2 112 49.1
CAN.G694.9 Capsicum annuum HOM05D006029 ORTHO05D007439 1.7e-22 109.4 112 45.5
Ciclev10022957m.g Citrus clementina HOM05D006029 ORTHO05D007439 1.7e-22 109.4 110 46.4
Peaxi162Scf00740g00556 Petunia axillaris HOM05D006029 ORTHO05D007439 2.2e-22 109.0 99 49.5
Aqoxy4G03109 Aquilegia oxysepala HOM05D006029 ORTHO05D007439 3.8e-22 108.2 111 47.7
Migut.B01899 Erythranthe guttata HOM05D006029 ORTHO05D007439 3.8e-22 108.2 112 49.1
Solyc05g055890.3 Solanum lycopersicum HOM05D006029 ORTHO05D007439 3.8e-22 108.2 112 43.8
Sopen05g034290 Solanum pennellii HOM05D006029 ORTHO05D007439 3.8e-22 108.2 112 43.8
PGSC0003DMG402023468 Solanum tuberosum HOM05D006029 ORTHO05D007439 8.4e-22 107.1 112 43.8
HPP92_017871 Vanilla planifolia HOM05D006029 ORTHO05D007439 8.4e-22 107.1 112 47.3
HanXRQChr17g0563271 Helianthus annuus HOM05D006029 ORTHO05D007439 1.4e-21 106.3 90 52.2
Lj3g0023283 Lotus japonicus HOM05D006029 ORTHO05D007439 1.9e-21 105.9 110 44.5
EL10Ac5g10924 Beta vulgaris HOM05D006029 ORTHO05D007439 4.2e-21 104.8 109 48.6
Hund17067 Selenicereus undatus HOM05D006029 ORTHO05D007439 9.3e-21 103.6 109 47.7
Lsat_1_v5_gn_7_7741 Lactuca sativa HOM05D006029 ORTHO05D007439 2.1e-20 102.4 110 46.4
SGA_v2.0_scaffold22G09953 Striga asiatica HOM05D006029 ORTHO05D007439 2.7e-20 102.1 111 45.0
AagrBONN_evm.TU.Sc2ySwM_117.3630 Anthoceros agrestis HOM05D006029 ORTHO05D007439 4.6e-20 101.3 111 48.6
Os02g0672700 Oryza sativa ssp. japonica HOM05D006029 ORTHO05D007439 7.9e-20 100.5 113 45.1
Zm00001eb187060 Zea mays HOM05D006029 ORTHO05D007439 3.0e-19 98.6 113 46.0
Haze_15690 Corylus avellana HOM05D006029 ORTHO05D007439 4.3e-18 94.7 84 48.8
ATR0751G147 Amborella trichopoda HOM05D006029 ORTHO05D007439 2.8e-17 92.0 111 45.0
Mapoly0101s0063 Marchantia polymorpha HOM05D006029 ORTHO05D007439 2.8e-17 92.0 111 49.5
Pp3c15_5550 Physcomitrium patens HOM05D006029 ORTHO05D007439 6.3e-17 90.9 113 42.5
Cre02.g102400 Chlamydomonas reinhardtii HOM05D006029 ORTHO05D007439 1.8e-16 89.4 107 40.2
MCO11G240 Micromonas commoda HOM05D006029 ORTHO05D007439 1.8e-16 89.4 109 42.2
Lsat_1_v5_gn_6_63820 Lactuca sativa HOM05D006029 ORTHO05D007439 9.0e-16 87.0 137 37.2
vmacro23448 Vaccinium macrocarpon HOM05D006029 ORTHO05D007439 9.0e-16 87.0 84 50.0
Rhsim07G0002100 Rhododendron simsii HOM05D006029 ORTHO05D007439 1.5e-15 86.3 75 54.7
Nitab4.5_0000476g0280 Nicotiana tabacum HOM05D006029 ORTHO05D007439 2.6e-15 85.5 86 44.2
SMO159G0009 Selaginella moellendorffii HOM05D006029 ORTHO05D007439 1.0e-14 83.6 110 42.7
CBR_g49523 Chara braunii HOM05D006029 ORTHO05D007439 8.5e-14 80.5 91 44.0
Dinv34229 Davidia involucrata HOM05D006425 ORTHO05D007312 1.4e-13 79.7 66 53.0
QL08p046069 Quercus lobata HOM05D006029 ORTHO05D007439 3.0e-11 72.0 68 48.5
Lsat_1_v5_gn_6_81300 Lactuca sativa HOM05D006029 ORTHO05D007439 8.8e-11 70.5 68 48.5
SMO347G0197 Selaginella moellendorffii HOM05D006029 ORTHO05D007439 4.3e-10 68.2 108 38.0
Atru.chr5.715 Acer truncatum HOM05D006029 ORTHO05D007439 7.4e-10 67.4 73 42.5
PRCOL_00000799 Prasinoderma coloniale HOM05D006029 ORTHO05D007439 7.4e-10 67.4 87 40.2
Nitab4.5_0009816g0020 Nicotiana tabacum HOM05D006029 ORTHO05D007439 1.3e-09 66.6 74 41.9
Ca_09543_v3 Cicer arietinum L. HOM05D006029 ORTHO05D007439 2.8e-09 65.5 68 45.6
Cc08_g08090 Coffea canephora HOM05D006029 ORTHO05D007439 3.1e-08 62.0 55 50.9
CBR_g31408 Chara braunii HOM05D006029 ORTHO05D007439 9.1e-08 60.5 71 42.3
Zm00001eb054840 Zea mays HOM05D005168 ORTHO05D006358 2.6e-07 58.9 108 31.5
Phvul.001G175600 Phaseolus vulgaris HOM05D005168 ORTHO05D006358 2.9e-06 55.5 109 27.5
MELO3C011355.2 Cucumis melo HOM05D005168 ORTHO05D006358 3.8e-06 55.1 113 31.9
Sed0007604 Sechium edule HOM05D005168 ORTHO05D006358 3.8e-06 55.1 109 29.4
CiPaw.07G147200 Carya illinoinensis HOM05D005168 ORTHO05D006358 5.0e-06 54.7 110 29.1
CsaV3_2G024260 Cucumis sativus L. HOM05D005168 ORTHO05D006358 6.5e-06 54.3 113 31.9
HanXRQChr04g0101211 Helianthus annuus HOM05D005168 ORTHO05D006358 6.5e-06 54.3 101 24.8
SEGI_04309 Sequoiadendron giganteum HOM05D005168 ORTHO05D006358 6.5e-06 54.3 111 27.9
VMungo1080G1160 Vigna mungo HOM05D005168 ORTHO05D006358 6.5e-06 54.3 109 27.5
Cre01.g018000 Chlamydomonas reinhardtii HOM05D005168 ORTHO05D006358 8.5e-06 53.9 109 29.4
Psat5g045240 Pisum sativum HOM05D005168 ORTHO05D006358 8.5e-06 53.9 109 26.6


User provided reference genes

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