Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p15170 Brassica napus HOM05D005196 ORTHO05D006107 4.0e-128 461.5 234 100.0
BraA09t37159Z Brassica rapa HOM05D005196 ORTHO05D006107 1.7e-126 456.1 234 98.7
C09p18370 Brassica napus HOM05D005196 ORTHO05D006107 3.0e-120 435.3 234 96.6
BolC9t54730H Brassica oleracea HOM05D005196 ORTHO05D006107 3.0e-120 435.3 234 96.6
BcaC04g22518 Brassica carinata HOM05D005196 ORTHO05D006107 5.2e-120 434.5 233 96.6
BcaB07g31533 Brassica carinata HOM05D005196 ORTHO05D006107 1.3e-115 419.9 238 93.3
BcaC04g22662 Brassica carinata HOM05D005196 ORTHO05D006107 1.3e-115 419.9 236 93.2
C09p16940 Brassica napus HOM05D005196 ORTHO05D006107 6.6e-115 417.5 236 92.4
BcaB07g31421 Brassica carinata HOM05D005196 ORTHO05D006107 1.5e-114 416.4 240 92.1
BraA09t37052Z Brassica rapa HOM05D005196 ORTHO05D006107 2.5e-114 415.6 236 93.2
A09p14050 Brassica napus HOM05D005196 ORTHO05D006107 4.3e-114 414.8 237 92.8
BolC9t54591H Brassica oleracea HOM05D005196 ORTHO05D006107 8.0e-113 410.6 234 91.5
Sp2g00720 Schrenkiella parvula HOM05D005196 ORTHO05D006107 1.0e-107 393.7 238 86.6
Aa31LG2G1060 Aethionema arabicum HOM05D005196 ORTHO05D006107 4.4e-103 378.3 237 84.4
AT1G63970 Arabidopsis thaliana HOM05D005196 ORTHO05D006107 6.4e-102 374.4 238 85.7
AL2G11140 Arabidopsis lyrata HOM05D005196 ORTHO05D006107 1.1e-101 373.6 238 84.5
CARHR047010 Cardamine hirsuta HOM05D005196 ORTHO05D006107 1.1e-101 373.6 233 84.5
Carub.0002s0087 Capsella rubella HOM05D005196 ORTHO05D006107 7.8e-100 367.5 238 81.9
THA.LOC104823600 Tarenaya hassleriana HOM05D005196 ORTHO05D006107 5.6e-98 361.3 233 80.3
THA.LOC104809368 Tarenaya hassleriana HOM05D005196 ORTHO05D006107 2.1e-97 359.4 237 79.3
Potri.001G099300 Populus trichocarpa HOM05D005196 ORTHO05D006107 2.8e-89 332.4 238 73.5
Nn1g01669 Nelumbo nucifera HOM05D005196 ORTHO05D006107 6.2e-89 331.3 241 72.2
HanXRQChr03g0085971 Helianthus annuus HOM05D005196 ORTHO05D006107 1.1e-88 330.5 237 74.7
PGR031G3114 Punica granatum HOM05D005196 ORTHO05D006107 1.1e-88 330.5 232 75.4
Lsat_1_v5_gn_6_84980 Lactuca sativa HOM05D005196 ORTHO05D006107 2.4e-88 329.3 233 73.4
Ciclev10021991m.g Citrus clementina HOM05D005196 ORTHO05D006107 8.9e-88 327.4 242 74.0
Duzib205G0943 Durio zibethinus HOM05D005196 ORTHO05D006107 1.5e-87 326.6 216 76.4
Lj2A178G47 Lonicera japonica HOM05D005196 ORTHO05D006107 2.0e-87 326.2 241 71.8
Cpa.g.sc631.3 Carica papaya HOM05D005196 ORTHO05D006107 2.6e-87 325.9 200 81.0
Migut.A00721 Erythranthe guttata HOM05D005196 ORTHO05D006107 2.6e-87 325.9 196 84.2
Gohir.D03G078300 Gossypium hirsutum HOM05D005196 ORTHO05D006107 2.6e-87 325.9 189 85.2
Gorai.003G085800 Gossypium raimondii HOM05D005196 ORTHO05D006107 2.6e-87 325.9 189 85.2
Potri.003G132400 Populus trichocarpa HOM05D005196 ORTHO05D006107 5.8e-87 324.7 238 72.7
FAN18G0698 Fragaria x ananassa HOM05D005196 ORTHO05D006107 1.3e-86 323.6 180 87.2
MD14G1111600 Malus domestica HOM05D005196 ORTHO05D006107 1.3e-86 323.6 240 71.2
GSVIVG01019415001 Vitis vinifera HOM05D005196 ORTHO05D006107 1.7e-86 323.2 183 88.0
FAN13G1103 Fragaria x ananassa HOM05D005196 ORTHO05D006107 2.2e-86 322.8 234 72.2
Gohir.A02G105500 Gossypium hirsutum HOM05D005196 ORTHO05D006107 2.2e-86 322.8 191 83.2
SalBow8G4511 Salvia bowleyana HOM05D005196 ORTHO05D006107 2.2e-86 322.8 235 70.2
Thecc.03G286300 Theobroma cacao HOM05D005196 ORTHO05D006107 2.2e-86 322.8 184 85.9
PSO782G4831 Papaver somniferum HOM05D005196 ORTHO05D006107 2.9e-86 322.4 241 70.5
Duzib068G0196 Durio zibethinus HOM05D005196 ORTHO05D006107 3.8e-86 322.0 184 86.4
FvH4_5g03170 Fragaria vesca HOM05D005196 ORTHO05D006107 4.9e-86 321.6 234 71.8
Nitab4.5_0007906g0030 Nicotiana tabacum HOM05D005196 ORTHO05D006107 4.9e-86 321.6 239 70.3
Aqoxy7G00203 Aquilegia oxysepala HOM05D005196 ORTHO05D006107 6.4e-86 321.2 246 68.7
COL.COLO4_08364 Corchorus olitorius HOM05D005196 ORTHO05D006107 6.4e-86 321.2 184 85.3
CANSAT21G0568 Cannabis sativa HOM05D005196 ORTHO05D006107 8.4e-86 320.9 247 71.3
AUR62010748 Chenopodium quinoa HOM05D005196 ORTHO05D006107 8.4e-86 320.9 202 78.2
FAN08G3453 Fragaria x ananassa HOM05D005196 ORTHO05D006107 1.1e-85 320.5 232 71.6
Hma1.2p1_0377F.1_g139550 Hydrangea macrophylla HOM05D005196 ORTHO05D006107 1.9e-85 319.7 242 69.4
Sabra03G0094900 Salix brachista HOM05D005196 ORTHO05D006107 1.9e-85 319.7 237 71.7
PSO478G4030 Papaver somniferum HOM05D005196 ORTHO05D006107 2.4e-85 319.3 239 69.5
RcHm_v2.0_Chr7g0196611 Rosa chinensis HOM05D005196 ORTHO05D006107 2.4e-85 319.3 237 72.2
Hund11434 Selenicereus undatus HOM05D005196 ORTHO05D006107 2.4e-85 319.3 184 84.2
Haze_08760 Corylus avellana HOM05D005196 ORTHO05D006107 3.2e-85 318.9 235 71.5
CsaV3_4G006100 Cucumis sativus L. HOM05D005196 ORTHO05D006107 3.2e-85 318.9 229 74.2
DCAR_005572 Daucus carota HOM05D005196 ORTHO05D006107 3.2e-85 318.9 223 76.7
Ah.12g051910 Amaranthus hybridus HOM05D005196 ORTHO05D006107 5.4e-85 318.2 222 74.3
CSS0021900 Camellia sinensis var. sinensis HOM05D005196 ORTHO05D006107 5.4e-85 318.2 187 84.5
Peaxi162Scf00074g01724 Petunia axillaris HOM05D005196 ORTHO05D006107 5.4e-85 318.2 241 69.7
Prupe.5G106300 Prunus persica HOM05D005196 ORTHO05D006107 5.4e-85 318.2 242 70.7
QL12p031809 Quercus lobata HOM05D005196 ORTHO05D006107 5.4e-85 318.2 191 82.7
Sed0013368 Sechium edule HOM05D005196 ORTHO05D006107 5.4e-85 318.2 225 74.7
Cc08_g15230 Coffea canephora HOM05D005196 ORTHO05D006107 7.1e-85 317.8 245 69.0
Manes.02G017610 Manihot esculenta HOM05D005196 ORTHO05D006107 7.1e-85 317.8 193 81.3
Nitab4.5_0003015g0100 Nicotiana tabacum HOM05D005196 ORTHO05D006107 7.1e-85 317.8 239 69.9
arahy.Tifrunner.gnm1.ann1.RG9U10 Arachis hypogaea HOM05D005196 ORTHO05D006107 9.3e-85 317.4 217 74.2
MSTRG.11956 Avicennia marina HOM05D005196 ORTHO05D006107 9.3e-85 317.4 202 78.2
FAN04G1400 Fragaria x ananassa HOM05D005196 ORTHO05D006107 9.3e-85 317.4 234 70.9
LjContig00312_ERROPOS870357g0014232 Lotus japonicus HOM05D005196 ORTHO05D006107 9.3e-85 317.4 241 69.3
unitig_37.g12237 Utricularia gibba HOM05D005196 ORTHO05D006107 9.3e-85 317.4 241 70.5
ClCG07G007880 Citrullus lanatus HOM05D005196 ORTHO05D006107 1.2e-84 317.0 225 75.1
Sopen08g029880 Solanum pennellii HOM05D005196 ORTHO05D006107 1.6e-84 316.6 236 70.8
PGSC0003DMG400012185 Solanum tuberosum HOM05D005196 ORTHO05D006107 1.6e-84 316.6 233 71.7
Solyc08g081570.3 Solanum lycopersicum HOM05D005196 ORTHO05D006107 2.7e-84 315.8 242 69.4
TWI81G1086 Tripterygium wilfordii HOM05D005196 ORTHO05D006107 2.7e-84 315.8 234 70.5
MELO3C016339.2 Cucumis melo HOM05D005196 ORTHO05D006107 3.5e-84 315.5 224 74.6
Eucgr.E00780 Eucalyptus grandis HOM05D005196 ORTHO05D006107 4.6e-84 315.1 225 72.9
Actinidia10607 Actinidia chinensis HOM05D005196 ORTHO05D006107 6.0e-84 314.7 181 86.2
Gorai.004G137800 Gossypium raimondii HOM05D005196 ORTHO05D006107 6.0e-84 314.7 191 82.2
Cfa012239 Carpinus fangiana HOM05D005196 ORTHO05D006107 7.8e-84 314.3 251 66.9
CiPaw.12G089400 Carya illinoinensis HOM05D005196 ORTHO05D006107 7.8e-84 314.3 219 72.6
TAR636G2140 Trochodendron aralioides HOM05D005196 ORTHO05D006107 1.0e-83 313.9 181 84.0
Sabra01G0074500 Salix brachista HOM05D005196 ORTHO05D006107 2.3e-83 312.8 180 84.4
CAN.G532.37 Capsicum annuum HOM05D005196 ORTHO05D006107 3.9e-83 312.0 234 70.1
Phvul.002G159900 Phaseolus vulgaris HOM05D005196 ORTHO05D006107 3.9e-83 312.0 244 69.3
SGA_v2.0_scaffold111G31472 Striga asiatica HOM05D005196 ORTHO05D006107 3.9e-83 312.0 244 68.9
CiPaw.11G130000 Carya illinoinensis HOM05D005196 ORTHO05D006107 5.1e-83 311.6 235 69.8
MD06G1090700 Malus domestica HOM05D005196 ORTHO05D006107 2.5e-82 309.3 248 67.3
Gohir.D08G134600 Gossypium hirsutum HOM05D005196 ORTHO05D006107 7.3e-82 307.8 198 79.3
MSTRG.13860 Avicennia marina HOM05D005196 ORTHO05D006107 9.6e-82 307.4 235 67.2
Os02g0680600 Oryza sativa ssp. japonica HOM05D005196 ORTHO05D006107 9.6e-82 307.4 233 70.8
HPP92_025411 Vanilla planifolia HOM05D005196 ORTHO05D006107 9.6e-82 307.4 223 68.2
Lalb_Chr09g0320831 Lupinus albus HOM05D005196 ORTHO05D006107 1.3e-81 307.0 175 83.4
Glyma.11G021400 Glycine max HOM05D005196 ORTHO05D006107 2.1e-81 306.2 232 70.3
ATR0661G112 Amborella trichopoda HOM05D005196 ORTHO05D006107 1.4e-80 303.5 159 89.9
Medtr5g010010 Medicago truncatula HOM05D005196 ORTHO05D006107 4.0e-80 302.0 198 75.8
Rhsim02G0235500 Rhododendron simsii HOM05D005196 ORTHO05D006107 4.0e-80 302.0 156 91.0
SGA_v2.0_scaffold144G35903 Striga asiatica HOM05D005196 ORTHO05D006107 4.0e-80 302.0 186 80.1
ECA240G2051 Erigeron canadensis HOM05D000662 ORTHO05D000597 5.3e-80 301.6 222 70.7
Oeu042360.2 Olea europaea HOM05D005196 ORTHO05D006107 1.5e-79 300.1 256 62.5
Ca_24538_v3 Cicer arietinum L. HOM05D005196 ORTHO05D006107 3.4e-79 298.9 187 78.6
Pp3c3_18960 Physcomitrium patens HOM05D005196 ORTHO05D006107 2.2e-78 296.2 207 72.5
SMO118G0129 Selaginella moellendorffii HOM05D005196 ORTHO05D006107 2.9e-78 295.8 180 77.8
Mapoly0107s0035 Marchantia polymorpha HOM05D005196 ORTHO05D006107 6.4e-78 294.7 182 78.6
SEGI_33828 Sequoiadendron giganteum HOM05D005196 ORTHO05D006107 2.1e-76 289.7 204 71.1
Sc01g0009830 Simmondsia chinensis HOM05D005196 ORTHO05D006107 3.5e-76 288.9 150 89.3
arahy.Tifrunner.gnm1.ann1.072U0I Arachis hypogaea HOM05D005196 ORTHO05D006107 1.9e-74 283.1 237 64.6
CBR_g41628 Chara braunii HOM05D005196 ORTHO05D006107 3.6e-73 278.9 180 73.3
Eucgr.L03318 Eucalyptus grandis HOM05D005196 ORTHO05D006107 1.4e-72 276.9 203 70.9
EL10Ac5g12833 Beta vulgaris HOM05D005196 ORTHO05D006107 3.4e-71 272.3 278 57.9
Cre12.g503550 Chlamydomonas reinhardtii HOM05D005196 ORTHO05D006107 4.5e-71 271.9 180 71.7
PRCOL_00001316 Prasinoderma coloniale HOM05D005196 ORTHO05D006107 1.2e-68 263.8 187 64.7
Ah.07g196720 Amaranthus hybridus HOM05D005196 ORTHO05D006107 3.5e-68 262.3 233 62.2
Dinv37598 Davidia involucrata HOM05D005196 ORTHO05D006107 3.0e-67 259.2 152 81.6
vmacro11408 Vaccinium macrocarpon HOM05D005196 ORTHO05D006107 7.4e-66 254.6 217 64.5
SEGI_11641 Sequoiadendron giganteum HOM05D005196 ORTHO05D006107 3.7e-65 252.3 180 71.1
MCO02G159 Micromonas commoda HOM05D005196 ORTHO05D006107 1.4e-64 250.4 182 66.5
TPR.G6615 Trifolium pratense HOM05D005196 ORTHO05D006107 6.9e-64 248.1 242 58.7
Actinidia28347 Actinidia chinensis HOM05D005196 ORTHO05D006107 2.4e-56 223.0 217 58.5
Atru.chr9.2118 Acer truncatum HOM05D005196 ORTHO05D006107 9.0e-56 221.1 122 87.7
CDE11G0665 Ceratophyllum demersum HOM05D005196 ORTHO05D006107 5.7e-50 201.8 139 73.4
Cfa012243 Carpinus fangiana HOM05D005196 ORTHO05D006107 1.6e-44 183.7 143 66.4
TAR629G0373 Trochodendron aralioides HOM05D005196 ORTHO05D006107 2.1e-44 183.3 124 71.8
BcaC02g10359 Brassica carinata HOM05D005196 ORTHO05D006107 3.6e-44 182.6 104 88.5
C04p29780 Brassica napus HOM05D005196 ORTHO05D006107 4.6e-44 182.2 104 87.5
Sed0007168 Sechium edule HOM05D005196 ORTHO05D006107 2.0e-42 176.8 112 79.5
Psat2g183400 Pisum sativum HOM05D005196 ORTHO05D006107 8.2e-41 171.4 160 57.5
Zm00001eb187250 Zea mays HOM05D005196 ORTHO05D006107 1.8e-40 170.2 159 60.4
Zm00001eb250670 Zea mays HOM05D005196 ORTHO05D006107 5.3e-40 168.7 83 91.6
Gohir.A08G114400 Gossypium hirsutum HOM05D005196 ORTHO05D006107 9.7e-34 147.9 116 69.0
PSO782G0193 Papaver somniferum HOM05D005196 ORTHO05D006107 7.0e-32 141.7 124 59.7
Cfa012242 Carpinus fangiana HOM05D005196 ORTHO05D006107 4.5e-31 139.0 82 82.9
VMungo0251G1828 Vigna mungo HOM05D005196 ORTHO05D006107 1.0e-30 137.9 78 87.2
Haze_27119 Corylus avellana HOM05D005196 ORTHO05D006107 1.7e-30 137.1 147 42.9
AUR62019751 Chenopodium quinoa HOM05D005196 ORTHO05D006107 1.9e-29 133.7 75 86.7
TAR629G1542 Trochodendron aralioides HOM05D005196 ORTHO05D006107 8.0e-28 128.3 87 75.9
CSS0017594 Camellia sinensis var. sinensis HOM05D005196 ORTHO05D006107 2.0e-23 113.6 77 75.3
BolC4t24512H Brassica oleracea HOM05D005196 ORTHO05D006107 1.5e-18 97.4 92 62.0
AagrBONN_evm.TU.Sc2ySwM_344.1771 Anthoceros agrestis HOM05D005196 ORTHO05D006107 4.4e-18 95.9 122 50.8
Gohir.A08G114450 Gossypium hirsutum HOM05D005196 ORTHO05D006107 3.5e-15 86.3 49 83.7
MD06G1092700 Malus domestica HOM05D005196 ORTHO05D006107 5.2e-11 72.4 121 40.5
MD13G1222800 Malus domestica HOM05D005196 ORTHO05D006107 5.7e-10 68.9 47 68.1
C04p29790 Brassica napus HOM05D005196 ORTHO05D006107 3.1e-08 63.2 28 92.9
BolC4t24513H Brassica oleracea HOM05D005196 ORTHO05D006107 3.1e-08 63.2 28 92.9
Hund14271 Selenicereus undatus HOM05D007428 ORTHO05D009308 3.5e-07 59.7 32 81.2


User provided reference genes

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