Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p10140 Brassica napus HOM05D006562 ORTHO05D008230 0.0e+00 1213.7 639 100.0
C09p12020 Brassica napus HOM05D006562 ORTHO05D008230 0.0e+00 1080.9 643 91.4
BraA09t36658Z Brassica rapa HOM05D006562 ORTHO05D008230 6.3e-293 1010.4 614 87.0
BolC9t54092H Brassica oleracea HOM05D006562 ORTHO05D008230 3.4e-291 1004.6 625 89.4
BcaC04g23114 Brassica carinata HOM05D006562 ORTHO05D008230 1.5e-286 989.2 606 90.1
BcaB04g20123 Brassica carinata HOM05D006562 ORTHO05D008230 3.2e-257 891.7 626 78.0
Thhalv10003881m.g Eutrema salsugineum HOM05D006562 ORTHO05D008230 2.4e-244 849.0 593 76.4
Sp2g30560 Schrenkiella parvula HOM05D006562 ORTHO05D008230 3.5e-243 845.1 637 73.2
AL8G45460 Arabidopsis lyrata HOM05D006562 ORTHO05D008230 1.0e-242 843.6 594 76.6
Carub.0008s2836 Capsella rubella HOM05D006562 ORTHO05D008230 2.3e-239 832.4 600 75.0
AT5G66130 Arabidopsis thaliana HOM05D006562 ORTHO05D008230 1.5e-238 829.7 601 74.7
CARHR281620 Cardamine hirsuta HOM05D006562 ORTHO05D008230 2.4e-236 822.4 589 76.2
Aa31LG1G14620 Aethionema arabicum HOM05D006562 ORTHO05D008230 4.9e-197 691.8 510 72.7
Cpa.g.sc6.285 Carica papaya HOM05D006562 ORTHO05D008230 2.6e-166 589.7 602 56.6
Gohir.A10G098700 Gossypium hirsutum HOM05D006562 ORTHO05D008230 5.9e-166 588.6 590 55.9
Thecc.01G014800 Theobroma cacao HOM05D006562 ORTHO05D008230 3.0e-162 576.2 599 53.8
Gohir.D10G089300 Gossypium hirsutum HOM05D006562 ORTHO05D008230 6.3e-160 568.5 603 53.2
CiPaw.07G060900 Carya illinoinensis HOM05D006562 ORTHO05D008230 1.1e-159 567.8 610 52.1
COL.COLO4_22460 Corchorus olitorius HOM05D006562 ORTHO05D008230 5.3e-159 565.5 584 53.9
Gorai.011G098200 Gossypium raimondii HOM05D006562 ORTHO05D008230 1.3e-157 560.8 603 52.7
QL06p051072 Quercus lobata HOM05D006562 ORTHO05D008230 1.1e-156 557.8 604 52.8
Atru.chr3.853 Acer truncatum HOM05D006562 ORTHO05D008230 1.5e-156 557.4 641 50.4
MD15G1242700 Malus domestica HOM05D006562 ORTHO05D008230 1.9e-156 557.0 599 53.1
Lj2A480G48 Lonicera japonica HOM05D006562 ORTHO05D008230 1.2e-155 554.3 586 53.1
Potri.005G111000 Populus trichocarpa HOM05D006562 ORTHO05D008230 1.2e-155 554.3 609 52.2
Sabra05G0091000 Salix brachista HOM05D006562 ORTHO05D008230 3.6e-155 552.7 603 52.2
TWI53G1373 Tripterygium wilfordii HOM05D006562 ORTHO05D008230 8.0e-155 551.6 608 52.0
CANSAT25G3480 Cannabis sativa HOM05D006562 ORTHO05D008230 1.8e-154 550.4 581 52.8
Cfa007000 Carpinus fangiana HOM05D006562 ORTHO05D008230 1.8e-154 550.4 606 51.0
Actinidia22955 Actinidia chinensis HOM05D006562 ORTHO05D008230 8.8e-154 548.1 606 52.0
Manes.01G148500 Manihot esculenta HOM05D006562 ORTHO05D008230 7.5e-153 545.0 613 52.0
FAN28G2818 Fragaria x ananassa HOM05D006562 ORTHO05D008230 1.4e-151 540.8 594 52.0
CSS0025685 Camellia sinensis var. sinensis HOM05D006562 ORTHO05D008230 9.1e-151 538.1 608 51.6
vmacro22192 Vaccinium macrocarpon HOM05D006562 ORTHO05D008230 1.3e-149 534.3 608 51.8
FAN23G1005 Fragaria x ananassa HOM05D006562 ORTHO05D008230 1.7e-149 533.9 591 51.4
vmacro22151 Vaccinium macrocarpon HOM05D006562 ORTHO05D008230 1.7e-149 533.9 608 51.6
FvH4_1g11470 Fragaria vesca HOM05D006562 ORTHO05D008230 3.8e-149 532.7 598 51.5
FAN19G2077 Fragaria x ananassa HOM05D006562 ORTHO05D008230 3.8e-149 532.7 601 51.6
Haze_03732 Corylus avellana HOM05D006562 ORTHO05D008230 2.5e-148 530.0 642 48.0
RcHm_v2.0_Chr2g0099051 Rosa chinensis HOM05D006562 ORTHO05D008230 2.5e-148 530.0 603 50.7
HanXRQChr15g0483891 Helianthus annuus HOM05D006562 ORTHO05D008230 4.2e-148 529.3 591 49.9
GSVIVG01018736001 Vitis vinifera HOM05D006562 ORTHO05D008230 2.7e-147 526.6 610 50.3
TAR376G1060 Trochodendron aralioides HOM05D006562 ORTHO05D008230 6.1e-147 525.4 584 52.1
Dinv33663 Davidia involucrata HOM05D006562 ORTHO05D008230 1.0e-146 524.6 605 50.7
Ciclev10025220m.g Citrus clementina HOM05D006562 ORTHO05D008230 1.2e-145 521.2 530 54.5
Sed0025600 Sechium edule HOM05D006562 ORTHO05D008230 2.2e-144 516.9 602 48.7
Ca_03628_v3 Cicer arietinum L. HOM05D006562 ORTHO05D008230 1.4e-143 514.2 608 50.0
Lj4g0007150 Lotus japonicus HOM05D006562 ORTHO05D008230 9.1e-143 511.5 526 54.4
Phvul.003G265000 Phaseolus vulgaris HOM05D006562 ORTHO05D008230 2.9e-141 506.5 524 54.4
Lsat_1_v5_gn_3_72080 Lactuca sativa HOM05D006562 ORTHO05D008230 6.5e-141 505.4 507 54.4
MBI05_g23389_MAGBIO Magnolia biondii HOM05D006562 ORTHO05D008230 2.5e-140 503.4 623 49.6
Psat4g101960 Pisum sativum HOM05D006562 ORTHO05D008230 5.5e-140 502.3 525 53.9
DCAR_014038 Daucus carota HOM05D006562 ORTHO05D008230 7.2e-140 501.9 527 51.6
Sc16g0001970 Simmondsia chinensis HOM05D006562 ORTHO05D008230 6.1e-139 498.8 598 50.2
Glyma.16G124500 Glycine max HOM05D006562 ORTHO05D008230 8.0e-139 498.4 519 54.3
Medtr8g075250 Medicago truncatula HOM05D006562 ORTHO05D008230 1.0e-138 498.0 518 52.9
TPR.G19508 Trifolium pratense HOM05D006562 ORTHO05D008230 1.0e-138 498.0 520 53.8
Eucgr.I02333 Eucalyptus grandis HOM05D006562 ORTHO05D008230 1.8e-138 497.3 570 50.9
VMungo0251G0646 Vigna mungo HOM05D006562 ORTHO05D008230 4.0e-138 496.1 524 54.8
Cc07_g11050 Coffea canephora HOM05D006562 ORTHO05D008230 5.2e-138 495.7 606 47.9
Migut.L00910 Erythranthe guttata HOM05D006562 ORTHO05D008230 1.2e-137 494.6 579 47.8
AUR62029498 Chenopodium quinoa HOM05D006562 ORTHO05D008230 1.5e-137 494.2 523 51.8
CsaV3_6G047340 Cucumis sativus L. HOM05D006562 ORTHO05D008230 2.0e-137 493.8 568 48.2
Duzib187G1447 Durio zibethinus HOM05D006562 ORTHO05D008230 2.6e-137 493.4 606 48.5
AUR62003339 Chenopodium quinoa HOM05D006562 ORTHO05D008230 9.8e-137 491.5 593 48.6
arahy.Tifrunner.gnm1.ann1.X2JQ1G Arachis hypogaea HOM05D006562 ORTHO05D008230 1.3e-136 491.1 516 53.5
Sopen02g028380 Solanum pennellii HOM05D006562 ORTHO05D008230 2.2e-136 490.3 577 48.4
Aqoxy5G01815 Aquilegia oxysepala HOM05D006562 ORTHO05D008230 8.3e-136 488.4 520 53.1
ClCG01G020460 Citrullus lanatus HOM05D006562 ORTHO05D008230 8.3e-136 488.4 628 46.5
arahy.Tifrunner.gnm1.ann1.6MN492 Arachis hypogaea HOM05D006562 ORTHO05D008230 4.1e-135 486.1 516 53.3
PGSC0003DMG400003647 Solanum tuberosum HOM05D006562 ORTHO05D008230 2.7e-134 483.4 507 52.9
Solyc02g083600.4 Solanum lycopersicum HOM05D006562 ORTHO05D008230 7.8e-134 481.9 577 47.8
Oeu048479.1 Olea europaea HOM05D006562 ORTHO05D008230 1.3e-133 481.1 566 48.9
SalBow5G1234 Salvia bowleyana HOM05D006562 ORTHO05D008230 3.3e-132 476.5 598 47.7
SGA_v2.0_scaffold229G43296 Striga asiatica HOM05D006562 ORTHO05D008230 5.6e-132 475.7 497 51.7
Lalb_Chr16g0391391 Lupinus albus HOM05D006562 ORTHO05D008230 7.3e-132 475.3 603 47.9
Nitab4.5_0001892g0110 Nicotiana tabacum HOM05D006562 ORTHO05D008230 4.7e-131 472.6 578 47.2
Prupe.7G171500 Prunus persica HOM05D006562 ORTHO05D008230 5.2e-130 469.2 497 53.7
CAN.G1274.29 Capsicum annuum HOM05D006562 ORTHO05D008230 6.8e-130 468.8 497 50.9
PGR119G1624 Punica granatum HOM05D006562 ORTHO05D008230 2.9e-128 463.4 584 46.6
EL10Ac6g15524 Beta vulgaris HOM05D006562 ORTHO05D008230 9.2e-127 458.4 578 47.2
Peaxi162Scf00328g00616 Petunia axillaris HOM05D006562 ORTHO05D008230 2.7e-126 456.8 602 45.8
MSTRG.15581 Avicennia marina HOM05D006562 ORTHO05D008230 1.9e-124 450.7 500 50.8
Rhsim10G0209300 Rhododendron simsii HOM05D006562 ORTHO05D008230 1.9e-124 450.7 579 47.2
MELO3C007925.2 Cucumis melo HOM05D006562 ORTHO05D008230 2.5e-124 450.3 632 42.7
Nitab4.5_0003187g0030 Nicotiana tabacum HOM05D006562 ORTHO05D008230 3.6e-123 446.4 512 49.6
unitig_37.g12438 Utricularia gibba HOM05D006562 ORTHO05D008230 3.7e-120 436.4 507 49.9
Hund16502 Selenicereus undatus HOM05D006562 ORTHO05D008230 4.1e-119 433.0 423 55.8
ECA246G3730 Erigeron canadensis HOM05D006562 ORTHO05D008230 1.2e-118 431.4 585 46.0
Ah.03g149120 Amaranthus hybridus HOM05D006562 ORTHO05D008230 1.3e-117 427.9 592 45.1
PSO170G3776 Papaver somniferum HOM05D006562 ORTHO05D008230 3.0e-117 426.8 531 49.7
PSO700G0294 Papaver somniferum HOM05D006562 ORTHO05D008230 1.5e-116 424.5 527 48.4
HPP92_022171 Vanilla planifolia HOM05D006562 ORTHO05D008230 9.5e-116 421.8 544 47.1
Os03g0242100 Oryza sativa ssp. japonica HOM05D006562 ORTHO05D008230 1.1e-114 418.3 519 46.6
ATR0712G114 Amborella trichopoda HOM05D006562 ORTHO05D008230 1.2e-113 414.8 497 49.7
SHI08537 Sapria himalayana HOM05D006562 ORTHO05D008230 3.4e-113 413.3 401 53.9
Zm00001eb398900 Zea mays HOM05D006562 ORTHO05D008230 2.3e-109 400.6 485 46.2
HPP92_022170 Vanilla planifolia HOM05D006562 ORTHO05D008230 1.7e-88 331.3 452 46.2
Pp3c8_14180 Physcomitrium patens HOM05D006562 ORTHO05D008230 5.6e-76 289.7 524 37.6
SMO329G0081 Selaginella moellendorffii HOM05D006562 ORTHO05D008230 7.4e-76 289.3 513 36.5
CDE02G3565 Ceratophyllum demersum HOM05D006562 ORTHO05D008230 1.3e-75 288.5 498 38.6
Mapoly0004s0213 Marchantia polymorpha HOM05D006562 ORTHO05D008230 3.5e-70 270.4 541 34.2
SEGI_24182 Sequoiadendron giganteum HOM05D006562 ORTHO05D008230 3.2e-55 220.7 318 40.3
FAN26G2549 Fragaria x ananassa HOM05D006562 ORTHO05D008230 7.4e-52 209.5 196 55.1
Dinv33664 Davidia involucrata HOM05D006562 ORTHO05D008230 2.4e-50 204.5 313 44.1
Hma1.2p1_0315F.1_g122300 Hydrangea macrophylla HOM05D006562 ORTHO05D008230 3.9e-45 187.2 190 56.3
MCO01G428 Micromonas commoda HOM05D006562 ORTHO05D008230 1.4e-37 162.2 569 26.9
PRCOL_00000425 Prasinoderma coloniale HOM05D006562 ORTHO05D008230 8.8e-29 132.9 419 27.0
CBR_g51010 Chara braunii HOM05D006562 ORTHO05D008230 5.7e-28 130.2 353 30.3
Cre03.g196600 Chlamydomonas reinhardtii HOM05D006562 ORTHO05D008230 1.2e-25 122.5 579 23.1
Lsat_1_v5_gn_5_17820 Lactuca sativa HOM05D002511 ORTHO05D019442 4.0e-21 107.5 152 42.8
Sopen10g019740 Solanum pennellii HOM05D006562 ORTHO05D008230 2.4e-10 71.6 68 57.4
Mapoly0030s0061 Marchantia polymorpha HOM05D004977 ORTHO05D006454 7.0e-10 70.1 474 22.2
CAN.G160.14 Capsicum annuum HOM05D004977 ORTHO05D006454 2.0e-09 68.6 298 23.2
Nitab4.5_0003551g0050 Nicotiana tabacum HOM05D004977 ORTHO05D006454 4.6e-09 67.4 256 23.8
Cre12.g521200 Chlamydomonas reinhardtii HOM05D004977 ORTHO05D006454 6.0e-09 67.0 269 24.5
Nitab4.5_0002611g0110 Nicotiana tabacum HOM05D004977 ORTHO05D006454 7.8e-09 66.6 256 23.8
SEGI_14672 Sequoiadendron giganteum HOM05D006562 ORTHO05D008230 1.7e-08 65.5 116 34.5
Migut.D02372 Erythranthe guttata HOM05D004977 ORTHO05D006454 3.0e-08 64.7 291 24.4
HanXRQChr16g0525891 Helianthus annuus HOM05D004977 ORTHO05D006454 3.0e-08 64.7 256 24.2
CBR_g31434 Chara braunii HOM05D004977 ORTHO05D006454 3.9e-08 64.3 234 25.2
Solyc07g005880.3 Solanum lycopersicum HOM05D004977 ORTHO05D006454 3.9e-08 64.3 290 23.1
Sopen07g001990 Solanum pennellii HOM05D004977 ORTHO05D006454 3.9e-08 64.3 290 23.1
FAN25G0235 Fragaria x ananassa HOM05D004977 ORTHO05D006454 8.6e-08 63.2 299 24.4
Peaxi162Scf00401g00211 Petunia axillaris HOM05D004977 ORTHO05D006454 8.6e-08 63.2 290 22.4
Prupe.8G068000 Prunus persica HOM05D004977 ORTHO05D006454 8.6e-08 63.2 299 23.7
Actinidia17422 Actinidia chinensis HOM05D006562 ORTHO05D008230 1.1e-07 62.8 192 30.2
FvH4_3g28250 Fragaria vesca HOM05D004977 ORTHO05D006454 1.1e-07 62.8 301 24.6
FAN11G1922 Fragaria x ananassa HOM05D004977 ORTHO05D006454 1.1e-07 62.8 301 24.6
Lalb_Chr01g0005801 Lupinus albus HOM05D004977 ORTHO05D006454 1.1e-07 62.8 264 23.1
FAN21G3176 Fragaria x ananassa HOM05D004977 ORTHO05D006454 1.9e-07 62.0 298 24.2
FAN16G1264 Fragaria x ananassa HOM05D004977 ORTHO05D006454 2.5e-07 61.6 299 24.1
Lsat_1_v5_gn_5_12680 Lactuca sativa HOM05D004664 ORTHO05D005526 2.5e-07 61.6 67 52.2
MD07G1072700 Malus domestica HOM05D004977 ORTHO05D006454 2.5e-07 61.6 296 23.0
Pp3c22_21030 Physcomitrium patens HOM05D004977 ORTHO05D006454 2.5e-07 61.6 289 23.2
Cc01_g07900 Coffea canephora HOM05D004977 ORTHO05D006454 3.3e-07 61.2 290 23.4
THA.LOC104810945 Tarenaya hassleriana HOM05D004977 ORTHO05D006454 3.3e-07 61.2 290 23.4
MD05G1047200 Malus domestica HOM05D004977 ORTHO05D006454 4.3e-07 60.8 296 23.0
QL01p019084 Quercus lobata HOM05D004977 ORTHO05D006454 4.3e-07 60.8 290 23.4
PGR044G2329 Punica granatum HOM05D004977 ORTHO05D006454 5.6e-07 60.5 258 24.8
Hund31048 Selenicereus undatus HOM05D006562 ORTHO05D008230 5.6e-07 60.5 55 56.4
Hund31049 Selenicereus undatus HOM05D006562 ORTHO05D008230 5.6e-07 60.5 55 56.4
Hund31353 Selenicereus undatus HOM05D006562 ORTHO05D008230 5.6e-07 60.5 55 56.4
Hund31354 Selenicereus undatus HOM05D006562 ORTHO05D008230 5.6e-07 60.5 55 56.4
Aa31LG1G13410 Aethionema arabicum HOM05D004977 ORTHO05D006454 7.3e-07 60.1 301 22.6
Haze_23597 Corylus avellana HOM05D004977 ORTHO05D006454 7.3e-07 60.1 262 23.3
Gohir.D04G019200 Gossypium hirsutum HOM05D004977 ORTHO05D006454 7.3e-07 60.1 290 23.8
Gorai.012G023000 Gossypium raimondii HOM05D004977 ORTHO05D006454 7.3e-07 60.1 290 23.8
Lj2C831G4 Lonicera japonica HOM05D004977 ORTHO05D006454 7.3e-07 60.1 298 24.8
ECA234G1388 Erigeron canadensis HOM05D004977 ORTHO05D006454 9.5e-07 59.7 290 23.4
CARHR191520 Cardamine hirsuta HOM05D004977 ORTHO05D006454 1.2e-06 59.3 301 23.6
Gohir.A05G395800 Gossypium hirsutum HOM05D004977 ORTHO05D006454 1.2e-06 59.3 290 23.8
SGA_v2.0_scaffold7G04011 Striga asiatica HOM05D004977 ORTHO05D006454 1.6e-06 58.9 290 23.1
Thecc.10G121800 Theobroma cacao HOM05D004977 ORTHO05D006454 1.6e-06 58.9 292 23.6
vmacro14315 Vaccinium macrocarpon HOM05D004977 ORTHO05D006454 2.1e-06 58.5 291 22.7
A04p20300 Brassica napus HOM05D006562 ORTHO05D008230 2.8e-06 58.2 47 59.6
SalBow6G4955 Salvia bowleyana HOM05D004977 ORTHO05D006454 2.8e-06 58.2 297 23.2
Manes.04G055000 Manihot esculenta HOM05D004977 ORTHO05D006454 3.6e-06 57.8 290 22.4
Actinidia04910 Actinidia chinensis HOM05D004977 ORTHO05D006454 4.7e-06 57.4 290 22.4
CDE05G0645 Ceratophyllum demersum HOM05D004977 ORTHO05D006454 4.7e-06 57.4 290 22.4
COL.COLO4_16322 Corchorus olitorius HOM05D004977 ORTHO05D006454 4.7e-06 57.4 299 23.4
Duzib114G0826 Durio zibethinus HOM05D004977 ORTHO05D006454 4.7e-06 57.4 256 23.4
RcHm_v2.0_Chr5g0051061 Rosa chinensis HOM05D004977 ORTHO05D006454 4.7e-06 57.4 296 23.3
Hund25154 Selenicereus undatus HOM05D004977 ORTHO05D006454 4.7e-06 57.4 296 22.0
Os11g0572100 Oryza sativa ssp. japonica HOM05D004977 ORTHO05D006454 6.2e-06 57.0 298 22.8


User provided reference genes

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