Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p07940 Brassica napus HOM05D004569 ORTHO05D005333 2.7e-112 408.7 205 100.0
BraA09t36445Z Brassica rapa HOM05D004569 ORTHO05D005333 7.5e-107 390.6 205 96.6
C09p08990 Brassica napus HOM05D004569 ORTHO05D005333 7.3e-94 347.4 203 90.6
BolC9t53811H Brassica oleracea HOM05D004569 ORTHO05D005333 7.3e-94 347.4 203 90.6
BcaC04g23378 Brassica carinata HOM05D004569 ORTHO05D005333 1.8e-63 246.5 144 91.7
BcaB04g19957 Brassica carinata HOM05D004569 ORTHO05D005333 1.1e-57 227.3 149 84.6
BolC2t12308H Brassica oleracea HOM05D004569 ORTHO05D005333 3.3e-46 189.1 186 61.8
C02p62490 Brassica napus HOM05D004569 ORTHO05D005333 7.4e-46 188.0 186 61.8
Sp2g26090 Schrenkiella parvula HOM05D004569 ORTHO05D005333 2.8e-45 186.0 144 68.8
A02p42590 Brassica napus HOM05D004569 ORTHO05D005333 3.4e-43 179.1 148 68.9
BraA02t09187Z Brassica rapa HOM05D004569 ORTHO05D005333 1.0e-42 177.6 144 70.1
BcaC03g18183 Brassica carinata HOM05D004569 ORTHO05D005333 1.3e-42 177.2 150 68.7
Thhalv10005100m.g Eutrema salsugineum HOM05D004569 ORTHO05D005333 6.5e-42 174.9 145 66.9
BcaB07g29675 Brassica carinata HOM05D004569 ORTHO05D005333 9.4e-41 171.0 153 64.7
AL8G39970 Arabidopsis lyrata HOM05D004569 ORTHO05D005333 1.2e-40 170.6 142 65.5
AT5G62950 Arabidopsis thaliana HOM05D004569 ORTHO05D005333 6.1e-40 168.3 144 66.0
AL3G51140 Arabidopsis lyrata HOM05D004569 ORTHO05D005333 1.8e-39 166.8 144 64.6
CARHR276760 Cardamine hirsuta HOM05D004569 ORTHO05D005333 2.3e-39 166.4 142 63.4
Carub.0004s0755 Capsella rubella HOM05D004569 ORTHO05D005333 3.0e-39 166.0 146 64.4
Carub.0008s2366 Capsella rubella HOM05D004569 ORTHO05D005333 3.9e-39 165.6 147 65.3
C06p41320 Brassica napus HOM05D004569 ORTHO05D005333 2.0e-38 163.3 146 64.4
Thhalv10000370m.g Eutrema salsugineum HOM05D004569 ORTHO05D005333 2.6e-38 162.9 147 61.2
BcaC01g02544 Brassica carinata HOM05D004569 ORTHO05D005333 5.7e-38 161.8 149 62.4
C03p63650 Brassica napus HOM05D004569 ORTHO05D005333 5.7e-38 161.8 149 62.4
BolC3t18624H Brassica oleracea HOM05D004569 ORTHO05D005333 5.7e-38 161.8 149 62.4
BolC6t39293H Brassica oleracea HOM05D004569 ORTHO05D005333 5.7e-38 161.8 152 63.2
BcaC08g46303 Brassica carinata HOM05D004569 ORTHO05D005333 7.4e-38 161.4 145 64.1
Aa31LG11G680 Aethionema arabicum HOM05D004569 ORTHO05D005333 8.2e-37 157.9 143 62.9
THA.LOC104827037 Tarenaya hassleriana HOM05D004569 ORTHO05D005333 2.5e-33 146.4 143 60.1
BcaB02g09711 Brassica carinata HOM05D004569 ORTHO05D005333 4.0e-31 139.0 139 59.0
BraA06t25922Z Brassica rapa HOM05D004569 ORTHO05D005333 3.3e-30 136.0 153 53.6
Potri.005G067600 Populus trichocarpa HOM05D004569 ORTHO05D005333 5.7e-30 135.2 137 55.5
PSO832G4509 Papaver somniferum HOM05D004569 ORTHO05D005333 1.3e-29 134.0 132 56.1
PSO210G1425 Papaver somniferum HOM05D004569 ORTHO05D005333 2.2e-29 133.3 132 55.3
Haze_03750 Corylus avellana HOM05D004569 ORTHO05D005333 2.8e-29 132.9 133 54.9
CiPaw.01G195800 Carya illinoinensis HOM05D004569 ORTHO05D005333 6.3e-29 131.7 139 53.2
Thecc.04G238000 Theobroma cacao HOM05D004569 ORTHO05D005333 6.3e-29 131.7 137 53.3
Cfa006984 Carpinus fangiana HOM05D004569 ORTHO05D005333 1.1e-28 131.0 124 56.5
Gorai.005G045300 Gossypium raimondii HOM05D004569 ORTHO05D005333 1.4e-28 130.6 145 51.0
Gohir.A02G034100 Gossypium hirsutum HOM05D004569 ORTHO05D005333 4.1e-28 129.0 143 51.0
Dinv07545 Davidia involucrata HOM05D004569 ORTHO05D005333 5.3e-28 128.6 146 51.4
Duzib052G0452 Durio zibethinus HOM05D004569 ORTHO05D005333 5.3e-28 128.6 138 50.7
Peaxi162Scf00192g01617 Petunia axillaris HOM05D004569 ORTHO05D005333 9.1e-28 127.9 139 53.2
CSS0021073 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 1.2e-27 127.5 149 50.3
Nitab4.5_0004412g0030 Nicotiana tabacum HOM05D004569 ORTHO05D005333 1.6e-27 127.1 145 51.7
Duzib052G0972 Durio zibethinus HOM05D004569 ORTHO05D005333 2.7e-27 126.3 142 50.7
Gohir.D02G040900 Gossypium hirsutum HOM05D004569 ORTHO05D005333 2.7e-27 126.3 143 50.3
Sc19g0003960 Simmondsia chinensis HOM05D004569 ORTHO05D005333 2.7e-27 126.3 145 51.0
Nitab4.5_0000321g0230 Nicotiana tabacum HOM05D004569 ORTHO05D005333 3.5e-27 125.9 148 52.7
TAR365G0299 Trochodendron aralioides HOM05D004569 ORTHO05D005333 4.5e-27 125.6 138 50.7
CSS0011446 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 7.7e-27 124.8 151 46.4
Manes.02G208200 Manihot esculenta HOM05D004569 ORTHO05D005333 7.7e-27 124.8 141 53.2
GSVIVG01036653001 Vitis vinifera HOM05D004569 ORTHO05D005333 1.0e-26 124.4 123 56.1
Hund09493 Selenicereus undatus HOM05D004569 ORTHO05D005333 1.3e-26 124.0 143 49.7
SalBow2G1663 Salvia bowleyana HOM05D004569 ORTHO05D005333 1.1e-25 120.9 144 50.0
CSS0049273 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 1.5e-25 120.6 153 47.1
CAN.G135.33 Capsicum annuum HOM05D004569 ORTHO05D005333 1.5e-25 120.6 122 56.6
SalBow8G0974 Salvia bowleyana HOM05D004569 ORTHO05D005333 1.5e-25 120.6 137 51.1
Lj6g0017152 Lotus japonicus HOM05D004569 ORTHO05D005333 2.5e-25 119.8 145 51.0
HanXRQChr06g0173001 Helianthus annuus HOM05D004569 ORTHO05D005333 5.5e-25 118.6 141 47.5
TWI63G1720 Tripterygium wilfordii HOM05D004569 ORTHO05D005333 7.2e-25 118.2 143 48.3
Cc03_g04240 Coffea canephora HOM05D004569 ORTHO05D005333 9.4e-25 117.9 146 50.0
Peaxi162Scf00904g00217 Petunia axillaris HOM05D004569 ORTHO05D005333 9.4e-25 117.9 135 52.6
Nn1g01867 Nelumbo nucifera HOM05D004569 ORTHO05D005333 1.2e-24 117.5 124 51.6
Ah.02g110960 Amaranthus hybridus HOM05D000936 ORTHO05D001411 2.1e-24 116.7 139 47.5
Sabra05G0055500 Salix brachista HOM05D004569 ORTHO05D005333 2.1e-24 116.7 107 57.0
Aqoxy5G00407 Aquilegia oxysepala HOM05D004569 ORTHO05D005333 2.7e-24 116.3 134 48.5
CANSAT78G0168 Cannabis sativa HOM05D004569 ORTHO05D005333 3.6e-24 115.9 139 48.2
HanXRQChr05g0158611 Helianthus annuus HOM05D004569 ORTHO05D005333 4.7e-24 115.5 127 49.6
Lalb_Chr06g0161741 Lupinus albus HOM05D004569 ORTHO05D005333 6.1e-24 115.2 164 45.1
SGA_v2.0_scaffold45G17132 Striga asiatica HOM05D004044 ORTHO05D005333 6.1e-24 115.2 139 46.8
Atru.chr4.2374 Acer truncatum HOM05D004569 ORTHO05D005333 8.0e-24 114.8 147 47.6
arahy.Tifrunner.gnm1.ann1.NDW3GA Arachis hypogaea HOM05D004569 ORTHO05D005333 8.0e-24 114.8 148 49.3
Ciclev10006087m.g Citrus clementina HOM05D004569 ORTHO05D005333 8.0e-24 114.8 142 48.6
ClCG06G006470 Citrullus lanatus HOM05D004569 ORTHO05D005333 1.0e-23 114.4 146 47.9
Phvul.001G230900 Phaseolus vulgaris HOM05D004569 ORTHO05D005333 1.0e-23 114.4 145 49.0
arahy.Tifrunner.gnm1.ann1.SFA2KC Arachis hypogaea HOM05D004569 ORTHO05D005333 1.8e-23 113.6 148 49.3
AUR62028629 Chenopodium quinoa HOM05D004569 ORTHO05D005333 4.0e-23 112.5 139 46.8
Glyma.11G217000 Glycine max HOM05D004569 ORTHO05D005333 1.2e-22 110.9 159 45.3
Dinv40544 Davidia involucrata HOM05D004569 ORTHO05D005333 1.5e-22 110.5 91 62.6
ECA246G0155 Erigeron canadensis HOM05D004569 ORTHO05D005333 1.5e-22 110.5 127 48.0
CsaV3_2G013430 Cucumis sativus L. HOM05D004569 ORTHO05D005333 2.0e-22 110.2 150 47.3
MD13G1198900 Malus domestica HOM05D004569 ORTHO05D005333 2.0e-22 110.2 157 40.1
Glyma.18G039600 Glycine max HOM05D004569 ORTHO05D005333 3.4e-22 109.4 123 51.2
Ca_17658_v3 Cicer arietinum L. HOM05D004569 ORTHO05D005333 5.7e-22 108.6 142 45.1
Medtr7g034585 Medicago truncatula HOM05D004569 ORTHO05D005333 7.5e-22 108.2 157 42.0
Sed0021164 Sechium edule HOM05D004569 ORTHO05D005333 9.8e-22 107.8 143 44.8
Oeu058961.1 Olea europaea HOM05D004569 ORTHO05D005333 1.3e-21 107.5 142 44.4
SGA_v2.0_scaffold353G49718 Striga asiatica HOM05D004569 ORTHO05D005333 1.7e-21 107.1 136 46.3
TPR.G14863 Trifolium pratense HOM05D004569 ORTHO05D005333 1.7e-21 107.1 143 46.2
Oeu042815.1 Olea europaea HOM05D004569 ORTHO05D005333 2.8e-21 106.3 131 46.6
Rhsim01G0189100 Rhododendron simsii HOM05D004569 ORTHO05D005333 2.8e-21 106.3 143 46.2
vmacro17995 Vaccinium macrocarpon HOM05D004569 ORTHO05D005333 2.8e-21 106.3 158 39.2
Nitab4.5_0004743g0130 Nicotiana tabacum HOM05D004569 ORTHO05D005333 3.7e-21 105.9 145 46.9
VMungo1383G1439 Vigna mungo HOM05D004569 ORTHO05D005333 4.8e-21 105.5 149 45.6
Rhsim04G0197700 Rhododendron simsii HOM05D004569 ORTHO05D005333 8.3e-21 104.8 143 45.5
MBI18_g09782_MAGBIO Magnolia biondii HOM05D004569 ORTHO05D005333 1.1e-20 104.4 132 44.7
SalBow1G3047 Salvia bowleyana HOM05D004569 ORTHO05D005333 1.4e-20 104.0 118 49.2
PGR031G3247 Punica granatum HOM05D004569 ORTHO05D005333 1.8e-20 103.6 123 48.8
CDE05G0131 Ceratophyllum demersum HOM05D004569 ORTHO05D005333 2.4e-20 103.2 125 46.4
Migut.B00535 Erythranthe guttata HOM05D004569 ORTHO05D005333 2.4e-20 103.2 136 44.9
VMungo1383G2501 Vigna mungo HOM05D004569 ORTHO05D005333 3.1e-20 102.8 142 45.1
MELO3C014285.2 Cucumis melo HOM05D004569 ORTHO05D005333 5.4e-20 102.1 94 56.4
PGR004G1818 Punica granatum HOM05D004569 ORTHO05D005333 5.4e-20 102.1 136 44.9
unitig_748.g7305 Utricularia gibba HOM05D004569 ORTHO05D005333 5.4e-20 102.1 124 46.8
Hma1.2p1_0602F.1_g187570 Hydrangea macrophylla HOM05D004569 ORTHO05D005333 7.0e-20 101.7 93 57.0
Sopen11g003670 Solanum pennellii HOM05D004569 ORTHO05D005333 7.0e-20 101.7 161 43.5
Lj5g0008299 Lotus japonicus HOM05D004569 ORTHO05D005333 1.6e-19 100.5 142 45.8
Psat3g163880 Pisum sativum HOM05D004569 ORTHO05D005333 2.7e-19 99.8 143 43.4
Atru.chr4.2398 Acer truncatum HOM05D004569 ORTHO05D005333 3.5e-19 99.4 92 57.6
Aqoxy2G03457 Aquilegia oxysepala HOM05D004569 ORTHO05D005333 1.7e-18 97.1 84 60.7
Prupe.1G020700 Prunus persica HOM05D004569 ORTHO05D005333 1.7e-18 97.1 157 40.1
Zm00001eb076250 Zea mays HOM05D004569 ORTHO05D005333 3.8e-18 95.9 152 42.1
Zm00001eb076290 Zea mays HOM05D004569 ORTHO05D005333 1.1e-17 94.4 136 43.4
Zm00001eb310390 Zea mays HOM05D004569 ORTHO05D005333 1.1e-17 94.4 136 43.4
Lsat_1_v5_gn_1_12980 Lactuca sativa HOM05D004569 ORTHO05D005333 1.5e-17 94.0 139 38.8
Dinv07599 Davidia involucrata HOM05D004569 ORTHO05D005333 1.9e-17 93.6 89 56.2
HPP92_022914 Vanilla planifolia HOM05D004569 ORTHO05D005333 1.9e-17 93.6 153 40.5
Zm00001eb076270 Zea mays HOM05D004569 ORTHO05D005333 1.9e-17 93.6 152 41.4
FvH4_5g27570 Fragaria vesca HOM05D004569 ORTHO05D005333 7.2e-17 91.7 139 41.0
Pp3c21_14050 Physcomitrium patens HOM05D004569 ORTHO05D005333 7.2e-17 91.7 138 42.8
PGSC0003DMG400027326 Solanum tuberosum HOM05D004569 ORTHO05D005333 9.5e-17 91.3 164 39.6
Medtr6g045613 Medicago truncatula HOM05D004569 ORTHO05D005333 1.2e-16 90.9 92 48.9
FAN13G2556 Fragaria x ananassa HOM05D004569 ORTHO05D005333 1.6e-16 90.5 137 42.3
RcHm_v2.0_Chr4g0387641 Rosa chinensis HOM05D004569 ORTHO05D005333 1.6e-16 90.5 138 35.5
FvH4_4g01070 Fragaria vesca HOM05D004569 ORTHO05D005333 2.8e-16 89.7 147 37.4
RcHm_v2.0_Chr6g0280701 Rosa chinensis HOM05D004569 ORTHO05D005333 3.6e-16 89.4 138 35.5
Os12g0488800 Oryza sativa ssp. japonica HOM05D004569 ORTHO05D005333 8.0e-16 88.2 90 51.1
AUR62033084 Chenopodium quinoa HOM05D004569 ORTHO05D005333 1.0e-15 87.8 100 47.0
Lsat_1_v5_gn_6_95400 Lactuca sativa HOM05D004569 ORTHO05D005333 1.4e-15 87.4 102 43.1
FAN12G4296 Fragaria x ananassa HOM05D004569 ORTHO05D005333 2.3e-15 86.7 147 36.7
ATR0829G086 Amborella trichopoda HOM05D004569 ORTHO05D005333 3.0e-15 86.3 149 38.3
Eucgr.H03416 Eucalyptus grandis HOM05D004569 ORTHO05D005333 3.0e-15 86.3 138 39.9
Psat3g162000 Pisum sativum HOM05D004569 ORTHO05D005333 3.0e-15 86.3 92 47.8
AT3G28956 Arabidopsis thaliana HOM05D004569 ORTHO05D005333 6.8e-15 85.1 67 67.2
AagrBONN_evm.TU.Sc2ySwM_228.788 Anthoceros agrestis HOM05D004569 ORTHO05D005333 3.4e-14 82.8 143 39.2
COL.COLO4_21559 Corchorus olitorius HOM05D004569 ORTHO05D005333 4.4e-14 82.4 93 44.1
Mapoly0090s0037 Marchantia polymorpha HOM05D004569 ORTHO05D005333 9.8e-14 81.3 124 37.9
Atru.chr5.182 Acer truncatum HOM05D004569 ORTHO05D005333 6.3e-13 78.6 122 42.6
Medtr6g045603 Medicago truncatula HOM05D004569 ORTHO05D005333 6.3e-13 78.6 156 36.5
A06p29750 Brassica napus HOM05D004569 ORTHO05D005333 1.1e-12 77.8 147 37.4
CSS0028808 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 7.0e-12 75.1 151 34.4
TAR636G3114 Trochodendron aralioides HOM05D004569 ORTHO05D005333 1.6e-11 73.9 97 42.3
SEGI_13490 Sequoiadendron giganteum HOM05D004569 ORTHO05D000001 2.9e-10 69.7 98 39.8
Hma1.2p1_0549F.1_g176970 Hydrangea macrophylla HOM05D004569 ORTHO05D005333 7.3e-09 65.1 77 44.2
FAN18G3311 Fragaria x ananassa HOM05D004569 ORTHO05D005333 1.2e-08 64.3 140 35.0
SMO343G0078 Selaginella moellendorffii HOM05D004569 ORTHO05D005333 2.1e-08 63.5 150 30.7
GSVIVG01008529001 Vitis vinifera HOM05D004569 ORTHO05D005333 2.8e-08 63.2 65 52.3
CBR_g19683 Chara braunii HOM05D004569 ORTHO05D005333 1.4e-07 60.8 92 40.2
arahy.Tifrunner.gnm1.ann1.LSLG48 Arachis hypogaea HOM05D001291 ORTHO05D005333 2.3e-07 60.1 124 37.1
Lj6C645G5 Lonicera japonica HOM05D004569 ORTHO05D005333 2.0e-06 57.0 39 71.8
AUR62008054 Chenopodium quinoa HOM05D000001 ORTHO05D000501 5.7e-06 55.5 84 36.9


User provided reference genes

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