Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A08p33920 Brassica napus HOM05D005206 ORTHO05D006219 0.0e+00 1101.3 550 100.0
BraA08t35305Z Brassica rapa HOM05D005206 ORTHO05D006219 1.3e-302 1042.3 550 95.6
BcaC07g38570 Brassica carinata HOM05D005206 ORTHO05D006219 8.3e-286 986.5 550 90.5
C08p13780 Brassica napus HOM05D005206 ORTHO05D006219 8.3e-286 986.5 550 90.5
BolC8t49011H Brassica oleracea HOM05D005206 ORTHO05D006219 7.1e-285 983.4 550 90.7
C08p13760 Brassica napus HOM05D005206 ORTHO05D006219 7.8e-284 979.9 555 90.1
BcaC07g38608 Brassica carinata HOM05D005206 ORTHO05D006219 8.1e-281 969.9 551 90.6
Sp1g09150 Schrenkiella parvula HOM05D005206 ORTHO05D006219 1.2e-260 902.9 558 84.2
Thhalv10009477m.g Eutrema salsugineum HOM05D005206 ORTHO05D006219 6.7e-259 897.1 558 82.8
Carub.0001s0995 Capsella rubella HOM05D005206 ORTHO05D006219 1.1e-256 889.8 557 82.6
CARHR010660 Cardamine hirsuta HOM05D005206 ORTHO05D006219 1.3e-254 882.9 558 82.3
Aa31LG1G4440 Aethionema arabicum HOM05D005206 ORTHO05D006219 1.9e-245 852.4 565 78.9
THA.LOC104816736 Tarenaya hassleriana HOM05D005206 ORTHO05D006219 3.0e-227 792.0 570 74.0
AT1G10520 Arabidopsis thaliana HOM05D005206 ORTHO05D006219 2.2e-222 775.8 496 81.2
AL1G21320 Arabidopsis lyrata HOM05D005206 ORTHO05D006219 1.1e-216 756.9 469 83.8
Atru.chr11.1960 Acer truncatum HOM05D005206 ORTHO05D006219 4.1e-208 728.4 565 66.9
Ciclev10031184m.g Citrus clementina HOM05D005206 ORTHO05D006219 3.2e-205 718.8 565 65.7
Potri.010G094800 Populus trichocarpa HOM05D005206 ORTHO05D006219 1.6e-204 716.5 563 67.1
Nitab4.5_0000257g0230 Nicotiana tabacum HOM05D005206 ORTHO05D006219 1.4e-203 713.4 565 66.7
arahy.Tifrunner.gnm1.ann1.05N2IU Arachis hypogaea HOM05D005206 ORTHO05D006219 1.3e-201 706.8 552 66.3
Manes.01G196700 Manihot esculenta HOM05D005206 ORTHO05D006219 2.8e-201 705.7 563 65.5
CsaV3_5G031880 Cucumis sativus L. HOM05D005206 ORTHO05D006219 1.6e-199 699.9 556 64.4
Sed0001006 Sechium edule HOM05D005206 ORTHO05D006219 2.0e-199 699.5 557 63.7
Migut.L01447 Erythranthe guttata HOM05D005206 ORTHO05D006219 7.7e-199 697.6 563 64.8
Nitab4.5_0005722g0070 Nicotiana tabacum HOM05D005206 ORTHO05D006219 2.9e-198 695.7 563 64.1
Lj2g0017178 Lotus japonicus HOM05D005206 ORTHO05D006219 3.8e-198 695.3 565 64.6
Hma1.2p1_1049F.1_g251730 Hydrangea macrophylla HOM05D005206 ORTHO05D006219 6.5e-198 694.5 555 64.7
CSS0048376 Camellia sinensis var. sinensis HOM05D005206 ORTHO05D006219 1.5e-197 693.3 574 63.9
FvH4_4g35030 Fragaria vesca HOM05D005206 ORTHO05D006219 1.5e-197 693.3 553 65.3
Eucgr.B02561 Eucalyptus grandis HOM05D005206 ORTHO05D006219 1.9e-197 693.0 564 64.4
Sabra10G0067100 Salix brachista HOM05D005206 ORTHO05D006219 9.5e-197 690.6 586 62.5
Lj3A1048T22 Lonicera japonica HOM05D005206 ORTHO05D006219 1.6e-196 689.9 560 64.1
arahy.Tifrunner.gnm1.ann1.U6W7RM Arachis hypogaea HOM05D005206 ORTHO05D006219 2.1e-196 689.5 583 62.8
RcHm_v2.0_Chr4g0444551 Rosa chinensis HOM05D005206 ORTHO05D006219 2.1e-196 689.5 552 64.7
Dinv30996 Davidia involucrata HOM05D005206 ORTHO05D006219 3.6e-196 688.7 575 62.8
RcHm_v2.0_Chr4g0444541 Rosa chinensis HOM05D005206 ORTHO05D006219 4.7e-196 688.3 550 64.7
CAN.G1160.5 Capsicum annuum HOM05D005206 ORTHO05D006219 8.0e-196 687.6 562 63.3
CANSAT56G0905 Cannabis sativa HOM05D005206 ORTHO05D006219 1.4e-195 686.8 554 64.6
Rhsim12G0124400 Rhododendron simsii HOM05D005206 ORTHO05D006219 2.3e-195 686.0 572 64.7
TWI36G1721 Tripterygium wilfordii HOM05D005206 ORTHO05D006219 3.0e-195 685.6 570 63.0
Phvul.004G071000 Phaseolus vulgaris HOM05D005206 ORTHO05D006219 8.9e-195 684.1 554 63.7
QL03p062489 Quercus lobata HOM05D005206 ORTHO05D006219 1.2e-194 683.7 573 62.5
Gorai.002G164200 Gossypium raimondii HOM05D005206 ORTHO05D006219 1.5e-194 683.3 565 63.4
PSO063G3522 Papaver somniferum HOM05D005206 ORTHO05D006219 1.5e-194 683.3 540 65.7
Lalb_Chr09g0326511 Lupinus albus HOM05D005206 ORTHO05D006219 2.0e-194 682.9 550 64.9
Gohir.A01G141200 Gossypium hirsutum HOM05D005206 ORTHO05D006219 9.8e-194 680.6 563 63.4
PSO832G4147 Papaver somniferum HOM05D005206 ORTHO05D006219 9.8e-194 680.6 570 63.5
vmacro16280 Vaccinium macrocarpon HOM05D005206 ORTHO05D006219 1.3e-193 680.2 567 63.3
TAR371G0117 Trochodendron aralioides HOM05D005206 ORTHO05D006219 1.7e-193 679.9 580 62.4
GSVIVG01020174001 Vitis vinifera HOM05D005206 ORTHO05D006219 1.7e-193 679.9 574 62.4
SalBow2G2775 Salvia bowleyana HOM05D005206 ORTHO05D006219 6.3e-193 677.9 572 62.6
Thecc.02G242400 Theobroma cacao HOM05D005206 ORTHO05D006219 1.1e-192 677.2 570 63.5
Medtr7g039450 Medicago truncatula HOM05D005206 ORTHO05D006219 1.8e-192 676.4 555 63.2
MSTRG.7873 Avicennia marina HOM05D005206 ORTHO05D006219 4.1e-192 675.2 561 62.4
Lsat_1_v5_gn_9_83200 Lactuca sativa HOM05D005206 ORTHO05D006219 4.1e-192 675.2 550 63.8
Glyma.02G065600 Glycine max HOM05D005206 ORTHO05D006219 7.0e-192 674.5 566 63.3
Medtr5g040170 Medicago truncatula HOM05D005206 ORTHO05D006219 2.0e-191 672.9 555 62.9
PGR119G2380 Punica granatum HOM05D005206 ORTHO05D006219 2.9e-190 669.1 568 62.1
Nn4g22885 Nelumbo nucifera HOM05D005206 ORTHO05D006219 3.8e-190 668.7 561 63.3
Sc11g0001370 Simmondsia chinensis HOM05D005206 ORTHO05D006219 5.0e-190 668.3 584 60.1
Actinidia15006 Actinidia chinensis HOM05D005206 ORTHO05D006219 8.6e-190 667.5 595 60.8
Solyc05g006120.3 Solanum lycopersicum HOM05D005206 ORTHO05D006219 9.5e-189 664.1 564 62.1
Ah.03g132350 Amaranthus hybridus HOM05D005206 ORTHO05D006219 1.2e-188 663.7 574 61.5
Sopen05g002140 Solanum pennellii HOM05D005206 ORTHO05D006219 1.2e-188 663.7 562 62.6
FvH4_4g35010 Fragaria vesca HOM05D005206 ORTHO05D006219 2.1e-188 662.9 555 62.2
Aqoxy3G03082 Aquilegia oxysepala HOM05D005206 ORTHO05D006219 4.7e-188 661.8 579 59.6
DCAR_007103 Daucus carota HOM05D005206 ORTHO05D006219 6.8e-187 657.9 578 60.9
MBI15_g34233_MAGBIO Magnolia biondii HOM05D005206 ORTHO05D006219 9.8e-186 654.1 620 57.6
HanXRQChr16g0527551 Helianthus annuus HOM05D005206 ORTHO05D006219 2.2e-185 652.9 552 63.2
ATR1149G100 Amborella trichopoda HOM05D005206 ORTHO05D006219 2.9e-185 652.5 585 60.2
Hund25315 Selenicereus undatus HOM05D005206 ORTHO05D006219 2.9e-185 652.5 583 60.2
EL10Ac8g20565 Beta vulgaris HOM05D005206 ORTHO05D006219 1.4e-184 650.2 572 61.5
Dinv31107 Davidia involucrata HOM05D005206 ORTHO05D006219 1.6e-183 646.7 539 62.9
Gohir.D01G132600 Gossypium hirsutum HOM05D005206 ORTHO05D006219 7.8e-183 644.4 546 62.8
SGA_v2.0_scaffold166G38340 Striga asiatica HOM05D005206 ORTHO05D006219 1.7e-182 643.3 666 54.7
Peaxi162Scf00421g00833 Petunia axillaris HOM05D005206 ORTHO05D006219 6.6e-182 641.3 568 61.4
AUR62039408 Chenopodium quinoa HOM05D005206 ORTHO05D006219 2.1e-180 636.3 593 58.9
Cfa009102 Carpinus fangiana HOM05D005206 ORTHO05D006219 3.6e-180 635.6 575 59.0
Duzib248G0782 Durio zibethinus HOM05D005206 ORTHO05D006219 1.3e-177 627.1 550 60.2
Os06g0237200 Oryza sativa ssp. japonica HOM05D005206 ORTHO05D006219 2.2e-177 626.3 560 60.0
ECA236G3606 Erigeron canadensis HOM05D005206 ORTHO05D006219 9.2e-176 620.9 565 59.3
Haze_12137 Corylus avellana HOM05D005206 ORTHO05D006219 3.5e-175 619.0 613 56.0
MELO3C034123.2 Cucumis melo HOM05D005206 ORTHO05D006219 6.0e-175 618.2 581 57.8
Zm00001eb371940 Zea mays HOM05D005206 ORTHO05D006219 3.1e-171 605.9 576 56.4
Ca_18093_v3 Cicer arietinum L. HOM05D005206 ORTHO05D006219 7.8e-167 591.3 541 60.1
TPR.G13491 Trifolium pratense HOM05D005206 ORTHO05D006219 8.6e-166 587.8 516 61.8
COL.COLO4_38096 Corchorus olitorius HOM05D005206 ORTHO05D006219 1.5e-165 587.0 532 59.8
TWI36G0196 Tripterygium wilfordii HOM05D005206 ORTHO05D006219 1.9e-165 586.6 509 61.5
SalBow2G3534 Salvia bowleyana HOM05D005206 ORTHO05D006219 4.7e-164 582.0 554 58.3
ClCG05G025020 Citrullus lanatus HOM05D005206 ORTHO05D006219 9.9e-162 574.3 556 55.9
CiPaw.06G074900 Carya illinoinensis HOM05D005206 ORTHO05D006219 2.3e-158 563.1 390 71.8
FAN12G3755 Fragaria x ananassa HOM05D005206 ORTHO05D006219 1.5e-157 560.5 553 56.2
SEGI_33189 Sequoiadendron giganteum HOM05D005206 ORTHO05D006219 6.2e-156 555.1 595 51.4
Hund05954 Selenicereus undatus HOM05D005206 ORTHO05D006219 2.4e-155 553.1 581 52.5
unitig_748.g7742 Utricularia gibba HOM05D005206 ORTHO05D006219 3.2e-152 542.7 426 66.0
Psat2g114280 Pisum sativum HOM05D005206 ORTHO05D006219 5.4e-152 542.0 489 59.3
FAN22G1639 Fragaria x ananassa HOM05D005206 ORTHO05D006219 1.5e-149 533.9 549 53.7
FAN12G3075 Fragaria x ananassa HOM05D005206 ORTHO05D006219 2.9e-145 519.6 571 51.7
Prupe.1G259900 Prunus persica HOM05D005206 ORTHO05D006219 5.4e-144 515.4 439 62.4
AL1G24280 Arabidopsis lyrata HOM05D005206 ORTHO05D006219 7.9e-143 511.5 299 84.9
AagrBONN_evm.TU.Sc2ySwM_344.2272 Anthoceros agrestis HOM05D005206 ORTHO05D006219 3.5e-135 486.1 550 48.7
Pp3c15_19010 Physcomitrium patens HOM05D005206 ORTHO05D006219 1.7e-129 467.2 576 45.8
MD16G1086700 Malus domestica HOM05D005206 ORTHO05D006219 3.5e-127 459.5 300 74.0
Mapoly0057s0101 Marchantia polymorpha HOM05D005206 ORTHO05D006219 2.3e-118 430.3 492 51.0
SMO353G0008 Selaginella moellendorffii HOM05D005206 ORTHO05D006219 2.9e-113 413.3 368 55.4
QL03p062590 Quercus lobata HOM05D005206 ORTHO05D006219 4.2e-112 409.5 569 45.7
Oeu025446.1 Olea europaea HOM05D005206 ORTHO05D006219 5.1e-110 402.5 389 56.6
CBR_g3482 Chara braunii HOM05D005206 ORTHO05D006219 4.5e-106 389.4 345 54.8
CDE07G1306 Ceratophyllum demersum HOM05D005206 ORTHO05D006219 1.0e-102 378.3 545 43.9
AUR62026580 Chenopodium quinoa HOM05D005206 ORTHO05D006219 4.7e-95 352.8 241 69.3
Cc11_g14230 Coffea canephora HOM05D005206 ORTHO05D006219 7.5e-93 345.5 377 53.1
SHI08107 Sapria himalayana HOM05D005206 ORTHO05D006219 1.3e-89 334.7 400 51.5
HPP92_017067 Vanilla planifolia HOM05D005206 ORTHO05D006219 6.1e-87 325.9 381 50.1
FAN07G1959 Fragaria x ananassa HOM05D005206 ORTHO05D006219 1.8e-83 314.3 294 56.5
Mapoly0078s0005 Marchantia polymorpha HOM05D005206 ORTHO05D006219 1.2e-82 311.6 563 34.5
Cc11_g14240 Coffea canephora HOM05D005206 ORTHO05D006219 2.7e-82 310.5 210 71.4
PGSC0003DMG400015600 Solanum tuberosum HOM05D005206 ORTHO05D006219 1.7e-81 307.8 210 72.4
FAN17G0295 Fragaria x ananassa HOM05D005206 ORTHO05D006219 2.3e-81 307.4 278 59.4
CBR_g48616 Chara braunii HOM05D005206 ORTHO05D006219 5.5e-80 302.8 517 37.5
AagrBONN_evm.TU.Sc2ySwM_362.251 Anthoceros agrestis HOM05D005206 ORTHO05D006219 1.7e-76 291.2 513 36.5
HPP92_017072 Vanilla planifolia HOM05D005206 ORTHO05D006219 3.7e-76 290.0 184 72.8
SMO235G0045 Selaginella moellendorffii HOM05D005206 ORTHO05D006219 3.7e-68 263.5 337 42.4
Cpa.g.sc5.344 Carica papaya HOM05D005206 ORTHO05D006219 5.6e-64 249.6 276 54.0
MD16G1086600 Malus domestica HOM05D005206 ORTHO05D006219 4.7e-63 246.5 259 53.7
SMO347G0124 Selaginella moellendorffii HOM05D005206 ORTHO05D006219 2.9e-60 237.3 336 39.9
Cpa.g.sc5.345 Carica papaya HOM05D005206 ORTHO05D006219 1.0e-57 228.8 164 68.3
AUR62026578 Chenopodium quinoa HOM05D005206 ORTHO05D006219 6.8e-54 216.1 287 47.4
Cpa.g.sc5.348 Carica papaya HOM05D005206 ORTHO05D006219 3.4e-53 213.8 119 82.4
VMungo0464G1917 Vigna mungo HOM05D005206 ORTHO05D006219 1.7e-52 211.5 261 49.0
HPP92_017071 Vanilla planifolia HOM05D005206 ORTHO05D006219 3.3e-40 170.6 229 46.3
Cfa026399 Carpinus fangiana HOM05D005206 ORTHO05D006219 2.8e-39 167.5 383 31.3
VMungo0464G2026 Vigna mungo HOM05D005206 ORTHO05D006219 2.6e-37 161.0 93 80.6
SHI08109 Sapria himalayana HOM05D005206 ORTHO05D006219 4.6e-34 150.2 123 61.8
FvH4_6g23350 Fragaria vesca HOM05D005206 ORTHO05D006219 1.5e-32 145.2 82 81.7
PRCOL_00003765 Prasinoderma coloniale HOM05D005206 ORTHO05D006219 5.3e-30 136.7 477 25.2
FvH4_5g07370 Fragaria vesca HOM05D003058 ORTHO05D003464 3.9e-25 120.6 107 58.9
MCO16G526 Micromonas commoda HOM05D005206 ORTHO05D006219 2.5e-24 117.9 577 25.5
RcHm_v2.0_Chr3g0484611 Rosa chinensis HOM05D005206 ORTHO05D006219 4.8e-23 113.6 62 83.9
Cre17.g716101 Chlamydomonas reinhardtii HOM05D005206 ORTHO05D006219 4.9e-20 103.6 222 31.5
Ca_04200_v3 Cicer arietinum L. HOM05D005206 ORTHO05D006219 3.1e-14 84.3 55 69.1
HPP92_017068 Vanilla planifolia HOM05D005206 ORTHO05D006219 4.2e-11 73.9 60 55.0
PRCOL_00003580 Prasinoderma coloniale HOM05D005206 ORTHO05D006219 5.7e-08 63.5 192 26.0
FvH4_6g44671 Fragaria vesca HOM05D005206 ORTHO05D006219 1.4e-06 58.9 35 80.0


User provided reference genes

Program Settings