Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A08p18770 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 3511.5 1908 100.0
BraA08t33838Z Brassica rapa HOM05D002037 ORTHO05D005261 0.0e+00 3511.5 1908 100.0
BolC3t21123H Brassica oleracea HOM05D002037 ORTHO05D005261 0.0e+00 3410.9 1908 97.6
C03p88150 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 3353.9 1913 95.9
BcaC01g01107 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 3316.9 1913 95.1
BcaB03g12684 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 3162.9 1917 90.3
A03p60560 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 2911.7 1876 84.9
BraA03t15097Z Brassica rapa HOM05D002037 ORTHO05D005261 0.0e+00 2909.0 1936 82.9
C07p58470 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 2891.7 1925 83.0
BolC7t46302H Brassica oleracea HOM05D002037 ORTHO05D005261 0.0e+00 2887.4 1922 83.0
AL7G20910 Arabidopsis lyrata HOM05D002037 ORTHO05D005261 0.0e+00 2818.9 1928 82.1
Thhalv10024189m.g Eutrema salsugineum HOM05D002037 ORTHO05D005261 0.0e+00 2788.4 1896 81.4
Carub.0007s0937 Capsella rubella HOM05D002037 ORTHO05D005261 0.0e+00 2774.2 1939 80.2
CARHR239070 Cardamine hirsuta HOM05D002037 ORTHO05D005261 0.0e+00 2726.0 1932 79.4
AT4G31160 Arabidopsis thaliana HOM05D002037 ORTHO05D005261 0.0e+00 2722.6 1925 79.9
THA.LOC104803581 Tarenaya hassleriana HOM05D002037 ORTHO05D005261 0.0e+00 2333.9 1875 69.8
Aa31LG2G19150 Aethionema arabicum HOM05D002037 ORTHO05D005261 0.0e+00 2325.1 1846 72.0
Sp7g29040 Schrenkiella parvula HOM05D002037 ORTHO05D005261 0.0e+00 2271.1 1455 84.1
THA.LOC104803889 Tarenaya hassleriana HOM05D002037 ORTHO05D005261 0.0e+00 2234.9 1875 67.8
BcaNung01540 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 2073.5 1428 81.6
Thecc.09G001100 Theobroma cacao HOM05D002037 ORTHO05D005261 0.0e+00 1994.9 1973 59.4
Gohir.A08G253200 Gossypium hirsutum HOM05D002037 ORTHO05D005261 0.0e+00 1951.0 1885 58.5
Gohir.D08G274900 Gossypium hirsutum HOM05D002037 ORTHO05D005261 0.0e+00 1948.7 1864 59.0
Ciclev10007230m.g Citrus clementina HOM05D002037 ORTHO05D005261 0.0e+00 1948.3 1978 58.3
Gorai.004G293400 Gossypium raimondii HOM05D002037 ORTHO05D005261 0.0e+00 1948.3 1885 58.4
Prupe.1G463700 Prunus persica HOM05D002037 ORTHO05D005261 0.0e+00 1921.7 1856 58.3
CiPaw.08G017100 Carya illinoinensis HOM05D002037 ORTHO05D005261 0.0e+00 1914.0 1894 57.4
Haze_21662 Corylus avellana HOM05D002037 ORTHO05D005261 0.0e+00 1910.2 1912 56.7
COL.COLO4_18641 Corchorus olitorius HOM05D002037 ORTHO05D005261 0.0e+00 1902.9 1859 57.7
Potri.006G280200 Populus trichocarpa HOM05D002037 ORTHO05D005261 0.0e+00 1898.6 1850 58.6
Glyma.06G075000 Glycine max HOM05D002037 ORTHO05D005261 0.0e+00 1890.2 1870 57.5
MD08G1132100 Malus domestica HOM05D002037 ORTHO05D005261 0.0e+00 1887.5 1903 57.9
FAN27G2203 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 1880.5 1960 57.6
FAN24G1054 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 1876.3 1959 57.5
FvH4_2g30560 Fragaria vesca HOM05D002037 ORTHO05D005261 0.0e+00 1875.9 1959 57.6
arahy.Tifrunner.gnm1.ann1.WQ4U6A Arachis hypogaea HOM05D002037 ORTHO05D005261 0.0e+00 1875.1 1987 56.7
RcHm_v2.0_Chr6g0312521 Rosa chinensis HOM05D002037 ORTHO05D005261 0.0e+00 1874.4 1990 57.2
arahy.Tifrunner.gnm1.ann1.8Q3S3N Arachis hypogaea HOM05D002037 ORTHO05D005261 0.0e+00 1872.8 1987 56.6
Manes.16G138600 Manihot esculenta HOM05D002037 ORTHO05D005261 0.0e+00 1872.8 1854 57.7
CiPaw.07G216200 Carya illinoinensis HOM05D002037 ORTHO05D005261 0.0e+00 1865.1 1937 55.7
Glyma.04G073900 Glycine max HOM05D002037 ORTHO05D005261 0.0e+00 1862.8 1979 56.8
QL12p030895 Quercus lobata HOM05D002037 ORTHO05D005261 0.0e+00 1852.4 1896 56.1
Phvul.009G099700 Phaseolus vulgaris HOM05D002037 ORTHO05D005261 0.0e+00 1851.6 1883 56.5
TWI63G1280 Tripterygium wilfordii HOM05D002037 ORTHO05D005261 0.0e+00 1847.4 1895 56.1
Duzib187G1591 Durio zibethinus HOM05D002037 ORTHO05D005261 0.0e+00 1845.9 1903 55.9
Cfa013233 Carpinus fangiana HOM05D002037 ORTHO05D005261 0.0e+00 1843.2 1853 56.7
TWI32G0793 Tripterygium wilfordii HOM05D002037 ORTHO05D005261 0.0e+00 1842.0 1896 56.1
CsaV3_3G046860 Cucumis sativus L. HOM05D002037 ORTHO05D005261 0.0e+00 1839.3 1891 55.7
MD15G1113300 Malus domestica HOM05D002037 ORTHO05D005261 0.0e+00 1835.5 1966 56.5
Sabra06G0217200 Salix brachista HOM05D002037 ORTHO05D005261 0.0e+00 1832.8 1804 57.6
VMungo1309G2917 Vigna mungo HOM05D002037 ORTHO05D005261 0.0e+00 1832.8 1881 56.4
CSS0033264 Camellia sinensis var. sinensis HOM05D002037 ORTHO05D005261 0.0e+00 1831.2 1897 55.2
Lalb_Chr11g0064041 Lupinus albus HOM05D002037 ORTHO05D005261 0.0e+00 1828.9 1963 55.6
Sed0009824 Sechium edule HOM05D002037 ORTHO05D005261 0.0e+00 1828.5 1874 56.0
Lalb_Chr08g0243691 Lupinus albus HOM05D002037 ORTHO05D005261 0.0e+00 1826.6 1867 55.8
Cpa.g.sc148.12 Carica papaya HOM05D002037 ORTHO05D005261 0.0e+00 1825.1 1962 56.2
Lj7A751T36 Lonicera japonica HOM05D002037 ORTHO05D005261 0.0e+00 1821.6 1995 55.2
Medtr3g108470 Medicago truncatula HOM05D002037 ORTHO05D005261 0.0e+00 1820.8 1915 55.3
Atru.chr7.2709 Acer truncatum HOM05D002037 ORTHO05D005261 0.0e+00 1812.7 1826 57.0
CANSAT25G0165 Cannabis sativa HOM05D002037 ORTHO05D005261 0.0e+00 1812.3 1899 56.2
MELO3C003650.2 Cucumis melo HOM05D002037 ORTHO05D005261 0.0e+00 1809.3 1964 54.7
TPR.G12447 Trifolium pratense HOM05D002037 ORTHO05D005261 0.0e+00 1805.4 1864 56.1
ClCG05G017350 Citrullus lanatus HOM05D002037 ORTHO05D005261 0.0e+00 1802.3 2028 53.2
PGR044G2064 Punica granatum HOM05D002037 ORTHO05D005261 0.0e+00 1801.9 1844 56.2
TAR628G0359 Trochodendron aralioides HOM05D002037 ORTHO05D005261 0.0e+00 1800.0 1916 54.1
Psat5g026040 Pisum sativum HOM05D002037 ORTHO05D005261 0.0e+00 1794.6 1882 55.3
Sed0015816 Sechium edule HOM05D002037 ORTHO05D005261 0.0e+00 1793.9 1882 54.8
Hund19377 Selenicereus undatus HOM05D002037 ORTHO05D005261 0.0e+00 1781.5 2008 54.1
Duzib168G1462 Durio zibethinus HOM05D002037 ORTHO05D005261 0.0e+00 1776.9 1831 58.0
Sopen08g023030 Solanum pennellii HOM05D002037 ORTHO05D005261 0.0e+00 1776.1 1895 54.9
PGR044G2421 Punica granatum HOM05D002037 ORTHO05D005261 0.0e+00 1775.0 1836 55.3
HanXRQChr03g0082961 Helianthus annuus HOM05D002037 ORTHO05D005261 0.0e+00 1773.1 1819 55.6
Lj5g0025434 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 1767.3 1969 54.0
Eucgr.C03980 Eucalyptus grandis HOM05D002037 ORTHO05D005261 0.0e+00 1765.4 1856 55.4
Solyc08g074370.4 Solanum lycopersicum HOM05D002037 ORTHO05D005261 0.0e+00 1760.0 1883 54.6
GSVIVG01035587001 Vitis vinifera HOM05D002037 ORTHO05D005261 0.0e+00 1757.3 1915 56.2
FAN20G1121 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 1755.3 1953 55.4
CAN.G195.8 Capsicum annuum HOM05D002037 ORTHO05D005261 0.0e+00 1746.5 1891 54.2
Lj1g0006019 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 1746.5 1882 53.6
Aqoxy6G00128 Aquilegia oxysepala HOM05D002037 ORTHO05D005261 0.0e+00 1744.6 1893 53.5
Sc09g0007440 Simmondsia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 1734.9 1972 53.2
Ca_15684_v3 Cicer arietinum L. HOM05D002037 ORTHO05D005261 0.0e+00 1725.7 1865 54.1
AUR62028065 Chenopodium quinoa HOM05D002037 ORTHO05D005261 0.0e+00 1720.3 1986 54.0
EL10Ac2g03672 Beta vulgaris HOM05D002037 ORTHO05D005261 0.0e+00 1718.4 2003 53.0
ECA240G1370 Erigeron canadensis HOM05D002037 ORTHO05D005261 0.0e+00 1718.4 1927 54.9
Cc00_g09840 Coffea canephora HOM05D002037 ORTHO05D005261 0.0e+00 1716.8 1953 53.8
Migut.A00462 Erythranthe guttata HOM05D002037 ORTHO05D005261 0.0e+00 1713.4 1844 53.4
vmacro05091 Vaccinium macrocarpon HOM05D002037 ORTHO05D005261 0.0e+00 1713.4 1801 54.0
Actinidia03327 Actinidia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 1704.9 1861 53.3
MSTRG.25765 Avicennia marina HOM05D002037 ORTHO05D005261 0.0e+00 1702.2 1898 53.5
SalBow4G1905 Salvia bowleyana HOM05D002037 ORTHO05D005261 0.0e+00 1689.5 1870 53.1
SGA_v2.0_scaffold193G40648 Striga asiatica HOM05D002037 ORTHO05D005261 0.0e+00 1686.0 1868 53.4
Lsat_1_v5_gn_5_59360 Lactuca sativa HOM05D002037 ORTHO05D005261 0.0e+00 1682.2 1805 54.0
SGA_v2.0_scaffold27G11691 Striga asiatica HOM05D002037 ORTHO05D005261 0.0e+00 1679.8 1887 52.2
DCAR_002179 Daucus carota HOM05D002037 ORTHO05D005261 0.0e+00 1677.9 1908 51.5
AUR62020667 Chenopodium quinoa HOM05D002037 ORTHO05D005261 0.0e+00 1674.8 1985 53.1
PSO063G0181 Papaver somniferum HOM05D002037 ORTHO05D005261 0.0e+00 1642.5 1863 51.2
PSO017G1653 Papaver somniferum HOM05D002037 ORTHO05D005261 0.0e+00 1627.1 1879 50.6
Peaxi162Scf00213g01313 Petunia axillaris HOM05D002037 ORTHO05D005261 0.0e+00 1616.3 1851 51.5
ATR0584G173 Amborella trichopoda HOM05D002037 ORTHO05D005261 0.0e+00 1609.3 1823 51.6
DCAR_030972 Daucus carota HOM05D002037 ORTHO05D005261 0.0e+00 1582.8 1922 49.4
CDE02G1944 Ceratophyllum demersum HOM05D002037 ORTHO05D005261 0.0e+00 1540.0 1896 48.5
CDE08G1677 Ceratophyllum demersum HOM05D002037 ORTHO05D005261 0.0e+00 1529.2 1893 48.3
Nn1g08375 Nelumbo nucifera HOM05D002037 ORTHO05D005261 0.0e+00 1509.2 1726 51.6
MBI09_g40924_MAGBIO Magnolia biondii HOM05D002037 ORTHO05D005261 0.0e+00 1507.7 1925 48.8
Rhsim07G0173400 Rhododendron simsii HOM05D002037 ORTHO05D005261 0.0e+00 1477.2 1728 50.8
HPP92_025041 Vanilla planifolia HOM05D002037 ORTHO05D005261 0.0e+00 1425.2 1932 46.9
Zm00001eb434410 Zea mays HOM05D002037 ORTHO05D005261 0.0e+00 1409.4 1883 46.3
Zm00001eb076460 Zea mays HOM05D002037 ORTHO05D005261 0.0e+00 1392.5 1876 46.2
Mapoly0062s0116 Marchantia polymorpha HOM05D002037 ORTHO05D005261 0.0e+00 1315.1 1998 43.0
Eucgr.C00279 Eucalyptus grandis HOM05D002037 ORTHO05D005261 0.0e+00 1298.1 1277 57.2
Pp3c1_12700 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1286.6 1934 42.9
Pp3c1_12703 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1286.6 1934 42.9
Pp3c2_24840 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1270.0 1858 43.0
unitig_26.g8827 Utricularia gibba HOM05D002037 ORTHO05D005261 0.0e+00 1218.0 1865 44.3
Dinv37481 Davidia involucrata HOM05D002037 ORTHO05D005261 0.0e+00 1172.1 1260 55.2
MBI09_g01931_MAGBIO Magnolia biondii HOM05D002037 ORTHO05D005261 0.0e+00 1114.4 1552 47.6
Actinidia25728 Actinidia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 1112.4 1968 41.4
Hma1.2p1_0214F.1_g090640 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 0.0e+00 1110.9 1221 54.1
AagrBONN_evm.TU.Sc2ySwM_117.676 Anthoceros agrestis HOM05D002037 ORTHO05D005261 0.0e+00 1100.9 1768 40.8
Nitab4.5_0009273g0010 Nicotiana tabacum HOM05D002037 ORTHO05D005261 1.3e-285 987.6 1050 54.8
Lj1g0010809 Lotus japonicus HOM05D002037 ORTHO05D005261 4.8e-272 942.6 1389 46.0
CBR_g37392 Chara braunii HOM05D002037 ORTHO05D000002 2.6e-257 893.6 1862 37.2
Dinv09451 Davidia involucrata HOM05D002037 ORTHO05D005261 9.1e-255 885.2 937 54.0
Hma1.2p1_0319F.1_g123860 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 1.3e-245 854.7 1019 50.4
Oeu057143.1 Olea europaea HOM05D002037 ORTHO05D005261 6.8e-234 815.8 1446 42.0
Migut.E01409 Erythranthe guttata HOM05D002037 ORTHO05D005261 2.6e-233 813.9 1784 34.2
Dinv09452 Davidia involucrata HOM05D002037 ORTHO05D005261 8.9e-226 788.9 905 52.8
SEGI_24212 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 4.5e-222 776.5 825 54.2
PSO170G5891 Papaver somniferum HOM05D002037 ORTHO05D005261 2.9e-216 757.3 869 52.0
Nitab4.5_0003528g0010 Nicotiana tabacum HOM05D002037 ORTHO05D005261 1.4e-215 755.0 887 54.8
BcaNung01541 Brassica carinata HOM05D002037 ORTHO05D005261 7.1e-167 593.2 436 74.5
Hma1.2p1_0214F.1_g090650 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 5.7e-156 557.0 495 58.0
Glyma.14G131100 Glycine max HOM05D002037 ORTHO05D005261 5.5e-151 540.4 767 44.3
SEGI_28363 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 3.6e-150 537.7 700 46.1
Os04g0691200 Oryza sativa ssp. japonica HOM05D002037 ORTHO05D005261 4.3e-148 530.8 697 46.1
Dinv37482 Davidia involucrata HOM05D002037 ORTHO05D005261 1.1e-138 499.6 497 53.9
SHI50541 Sapria himalayana HOM05D002037 ORTHO05D005261 4.0e-125 454.5 660 44.5
Hma1.2p1_2010F.1_g311000 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 6.7e-125 453.8 453 58.5
Hma1.2p1_1382F.1_g279390 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 1.7e-112 412.5 435 52.9
Hma1.2p1_2176F.1_g316130 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 2.5e-111 408.7 436 51.8
SHI21131 Sapria himalayana HOM05D002037 ORTHO05D005261 4.7e-102 377.9 423 51.1
Aqoxy4G02471 Aquilegia oxysepala HOM05D002037 ORTHO05D005261 1.0e-101 376.7 1229 27.6
Migut.E01404 Erythranthe guttata HOM05D002037 ORTHO05D005261 8.1e-86 323.9 596 36.6
FAN20G0200 Fragaria x ananassa HOM05D002037 ORTHO05D005261 3.4e-84 318.5 439 44.9
Migut.E01403 Erythranthe guttata HOM05D002037 ORTHO05D005261 6.0e-73 281.2 443 39.1
Cre17.g725450 Chlamydomonas reinhardtii HOM05D002037 ORTHO05D005261 4.8e-70 271.6 2073 22.0
Lj1g0019909 Lotus japonicus HOM05D002037 ORTHO05D005261 4.6e-57 228.4 163 69.3
Hund03252 Selenicereus undatus HOM05D002037 ORTHO05D005261 2.1e-49 203.0 855 26.8
TPR.G39361 Trifolium pratense HOM05D002037 ORTHO05D005261 2.3e-48 199.5 256 45.7
Hma1.2p1_1382F.1_g279380 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 3.3e-47 195.7 235 52.8
SEGI_07751 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 4.0e-45 188.7 246 43.9
Hma1.2p1_2176F.1_g316120 Hydrangea macrophylla HOM05D002037 ORTHO05D005586 2.2e-43 183.0 149 67.8
TPR.G7111 Trifolium pratense HOM05D002037 ORTHO05D005261 2.2e-38 166.4 188 55.9
Gohir.D08G274833 Gossypium hirsutum HOM05D002037 ORTHO05D005261 1.0e-32 147.5 77 89.6
Potri.006G280600 Populus trichocarpa HOM05D003201 ORTHO05D008914 1.0e-19 104.4 165 42.4
MD08G1134600 Malus domestica HOM05D002037 ORTHO05D005261 2.6e-12 79.7 57 61.4
arahy.Tifrunner.gnm1.ann1.ME62WN Arachis hypogaea HOM05D002037 ORTHO05D005261 4.5e-12 79.0 110 43.6
Nitab4.5_0000919g0010 Nicotiana tabacum HOM05D002037 ORTHO05D021575 4.0e-08 65.9 82 46.3
Hund03253 Selenicereus undatus HOM05D002037 ORTHO05D005261 3.7e-06 59.3 42 57.1
Dinv03356 Davidia involucrata HOM05D002037 ORTHO05D005261 8.3e-06 58.2 76 47.4


User provided reference genes

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